Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01401 and BL03596

See Amino acid alignment / Visit BSNT_01401 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence dna-align/BSNT_01401___yfiV.1.5803.seq
#    -bsequence dna-align/BL03596___yfiV.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01401___yfiV-BL03596___yfiV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01401___yfiV-BL03596___yfiV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01401___yfiV
# 2: BL03596___yfiV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 502
# Identity:     339/502 (67.5%)
# Similarity:   339/502 (67.5%)
# Gaps:          41/502 ( 8.2%)
# Score: 1091.5
# 
#
#=======================================

BSNT_01401___      1 ATGGAATATAATTTACACGATACAACAGTATTAAACGAAAACATTCTTTC     50
                     .||.||||.|||.|.||.||||||||.||..|.||||||.|||||.|..|
BL03596___yfi      1 TTGAAATACAATATTCATGATACAACCGTGCTGAACGAAGACATTTTGAC     50

BSNT_01401___     51 ATCGGAGGAACGGGAAATATGGGTGCTCTATATGAAAGTCTTAACGTCCG    100
                     |.||||.|||...||.|.||||||.||.|||||||||||..|.||..|.|
BL03596___yfi     51 ACCGGAAGAAAAAGAGACATGGGTTCTTTATATGAAAGTACTGACTGCTG    100

BSNT_01401___    101 CCGGCCTCGGTGATGTGTCCGAGTGGATGAAGCTGGATATGAGCATGCCG    150
                     |||||.|.||.|||||.|||||.|||||||||||.|||.|.|||||||||
BL03596___yfi    101 CCGGCTTGGGGGATGTCTCCGAATGGATGAAGCTCGATCTCAGCATGCCG    150

BSNT_01401___    151 CAAATGAAAGTGCTGATGCTATTAAACAACCATGGAACATTGAAAGTGAG    200
                     ||||||||.||..|.|||||..|.||||||||.||.|||.|||||||...
BL03596___yfi    151 CAAATGAAGGTTTTAATGCTTCTGAACAACCACGGCACACTGAAAGTCTC    200

BSNT_01401___    201 CGACATTGCTGAAAAAATGGGGGCTTCCCTGTCCAATACAACTGGGCTGC    250
                     .||.||.||.|||||||||||.||||||||.||.||||..||.||.||||
BL03596___yfi    201 AGAAATCGCCGAAAAAATGGGAGCTTCCCTTTCGAATATGACCGGACTGC    250

BSNT_01401___    251 TTGACCGCCTTGAGAAATCAGG----GTTTGTCAAACGCTCACATTCTGA    296
                     |...||||||||    |.||||    .|||.|||||.|..|||||||.||
BL03596___yfi    251 TCAGCCGCCTTG----AACAGGCGAACTTTATCAAAAGAACACATTCCGA    296

BSNT_01401___    297 AGAGGACCGCCGCTCTGTAGTTGTTCAGTTGACAGAAAATGCGAAAAAGA    346
                     ..|.|||||.||..|..|.||.|||.|.||.||.|||.|||||||...||
BL03596___yfi    297 GCAAGACCGGCGAACGATTGTGGTTGAATTAACCGAAGATGCGAAGGGGA    346

BSNT_01401___    347 TTTTCCGGGGTTTGTATGAAAAAGGCCACCTGAAATTGAAGCGTTCATTA    396
                     ||||.|||.|..|.||..|||||||.||  ||||    ||||  |||..|
BL03596___yfi    347 TTTTTCGGAGCCTTTACAAAAAAGGGCA--TGAA----AAGC--TCAAAA    388

BSNT_01401___    397 GAGCTGCTGTCCCCTGAAG---------------AAAAGCAGGCTGTTTC    431
                     |||| |||    .|.||||               ||||.||...||..| 
BL03596___yfi    389 GAGC-GCT----TCAGAAGCTGAATGAACAGGAAAAAAACAAAGTGAAT-    432

BSNT_01401___    432 CGAAGGGCTGTCTATCCTTTCAAGAGCATTAGAAAAAGCGAAAAAAGAAT    481
                      |||||.||..|.||.|||..||.|||.||   ||||||..|..|.||||
BL03596___yfi    433 -GAAGGCCTTACAATTCTTGAAAAAGCGTT---AAAAGCCGATGATGAAT    478

BSNT_01401___    482 AA    483
                     |.
BL03596___yfi    479 AG    480


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