Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01401 and BL03596
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_01401___yfiV.1.5803.seq
# -bsequence dna-align/BL03596___yfiV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01401___yfiV-BL03596___yfiV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01401___yfiV-BL03596___yfiV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01401___yfiV
# 2: BL03596___yfiV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 502
# Identity: 339/502 (67.5%)
# Similarity: 339/502 (67.5%)
# Gaps: 41/502 ( 8.2%)
# Score: 1091.5
#
#
#=======================================
BSNT_01401___ 1 ATGGAATATAATTTACACGATACAACAGTATTAAACGAAAACATTCTTTC 50
.||.||||.|||.|.||.||||||||.||..|.||||||.|||||.|..|
BL03596___yfi 1 TTGAAATACAATATTCATGATACAACCGTGCTGAACGAAGACATTTTGAC 50
BSNT_01401___ 51 ATCGGAGGAACGGGAAATATGGGTGCTCTATATGAAAGTCTTAACGTCCG 100
|.||||.|||...||.|.||||||.||.|||||||||||..|.||..|.|
BL03596___yfi 51 ACCGGAAGAAAAAGAGACATGGGTTCTTTATATGAAAGTACTGACTGCTG 100
BSNT_01401___ 101 CCGGCCTCGGTGATGTGTCCGAGTGGATGAAGCTGGATATGAGCATGCCG 150
|||||.|.||.|||||.|||||.|||||||||||.|||.|.|||||||||
BL03596___yfi 101 CCGGCTTGGGGGATGTCTCCGAATGGATGAAGCTCGATCTCAGCATGCCG 150
BSNT_01401___ 151 CAAATGAAAGTGCTGATGCTATTAAACAACCATGGAACATTGAAAGTGAG 200
||||||||.||..|.|||||..|.||||||||.||.|||.|||||||...
BL03596___yfi 151 CAAATGAAGGTTTTAATGCTTCTGAACAACCACGGCACACTGAAAGTCTC 200
BSNT_01401___ 201 CGACATTGCTGAAAAAATGGGGGCTTCCCTGTCCAATACAACTGGGCTGC 250
.||.||.||.|||||||||||.||||||||.||.||||..||.||.||||
BL03596___yfi 201 AGAAATCGCCGAAAAAATGGGAGCTTCCCTTTCGAATATGACCGGACTGC 250
BSNT_01401___ 251 TTGACCGCCTTGAGAAATCAGG----GTTTGTCAAACGCTCACATTCTGA 296
|...|||||||| |.|||| .|||.|||||.|..|||||||.||
BL03596___yfi 251 TCAGCCGCCTTG----AACAGGCGAACTTTATCAAAAGAACACATTCCGA 296
BSNT_01401___ 297 AGAGGACCGCCGCTCTGTAGTTGTTCAGTTGACAGAAAATGCGAAAAAGA 346
..|.|||||.||..|..|.||.|||.|.||.||.|||.|||||||...||
BL03596___yfi 297 GCAAGACCGGCGAACGATTGTGGTTGAATTAACCGAAGATGCGAAGGGGA 346
BSNT_01401___ 347 TTTTCCGGGGTTTGTATGAAAAAGGCCACCTGAAATTGAAGCGTTCATTA 396
||||.|||.|..|.||..|||||||.|| |||| |||| |||..|
BL03596___yfi 347 TTTTTCGGAGCCTTTACAAAAAAGGGCA--TGAA----AAGC--TCAAAA 388
BSNT_01401___ 397 GAGCTGCTGTCCCCTGAAG---------------AAAAGCAGGCTGTTTC 431
|||| ||| .|.|||| ||||.||...||..|
BL03596___yfi 389 GAGC-GCT----TCAGAAGCTGAATGAACAGGAAAAAAACAAAGTGAAT- 432
BSNT_01401___ 432 CGAAGGGCTGTCTATCCTTTCAAGAGCATTAGAAAAAGCGAAAAAAGAAT 481
|||||.||..|.||.|||..||.|||.|| ||||||..|..|.||||
BL03596___yfi 433 -GAAGGCCTTACAATTCTTGAAAAAGCGTT---AAAAGCCGATGATGAAT 478
BSNT_01401___ 482 AA 483
|.
BL03596___yfi 479 AG 480
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