Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05396 and BL03593
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:32
# Commandline: needle
# -asequence dna-align/BSNT_05396___yvyE.1.5803.seq
# -bsequence dna-align/BL03593___yvyE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05396___yvyE-BL03593___yvyE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05396___yvyE-BL03593___yvyE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05396___yvyE
# 2: BL03593___yvyE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 676
# Identity: 464/676 (68.6%)
# Similarity: 464/676 (68.6%)
# Gaps: 59/676 ( 8.7%)
# Score: 1572.0
#
#
#=======================================
BSNT_05396___ 1 ATGCTGCACAGCTATTTTACTGTGAAAGAAGCAGGAGAA------CACGA 44
||||||||.||||||.|.||||| .|||||.||| ||.||
BL03593___yvy 1 ATGCTGCAAAGCTATCTGACTGT------TGCAGGTGAAGGGACCCATGA 44
BSNT_05396___ 45 GATTGTTATAGAAAAATCGCGTTTTATCTGTCATTTAAGCCGTGTTTCTA 94
.||.||.||.||||||||.||.|||||.||.||.||.|||||.||...||
BL03593___yvy 45 AATCGTGATTGAAAAATCCCGGTTTATATGCCACTTGAGCCGCGTCAGTA 94
BSNT_05396___ 95 CCGAACAAGAGGCACAGGAATTTATACAGAAAATAAAGAAACAGCACTGG 144
|.|||.||||.||||||.|.|||||..|..|.|||||.||.|||||.|||
BL03593___yvy 95 CTGAAGAAGAAGCACAGAACTTTATCAACCACATAAAAAAGCAGCATTGG 144
BSNT_05396___ 145 AATGCGACTCATAATTGCTCGGCTTATGTTATTGGCGAGAATGATCATAT 194
||||||||.|||||||||||||||||.||.||.||.||.||||||||.||
BL03593___yvy 145 AATGCGACGCATAATTGCTCGGCTTACGTCATAGGAGAAAATGATCAAAT 194
BSNT_05396___ 195 CCAAAAAGCCAATGATGACGGGGAACCAAGCGGTACAGCGGGAGTGCCGA 244
.||||||||.|||||.|||||.|||||.|||||.||||||||.||.||||
BL03593___yvy 195 TCAAAAAGCGAATGACGACGGAGAACCGAGCGGGACAGCGGGCGTACCGA 244
BSNT_05396___ 245 TGCTCGAGGTTTTAAAGAAACGCAGACTGAAGGATACTTGCGCCGTCGTT 294
||||.||.|||||.||||||||||..||.||.|||||.||||||||.||.
BL03593___yvy 245 TGCTTGAAGTTTTGAAGAAACGCAACCTTAAAGATACATGCGCCGTTGTG 294
BSNT_05396___ 295 ACACGCTACTTCGGAGGCATTAAGCTTGGTGCTGGCGGATTAATTCGCGC 344
||..|.||.|||||.||||||||.||.||.||.||.|||||.||..|.||
BL03593___yvy 295 ACGAGATATTTCGGCGGCATTAAACTCGGCGCAGGAGGATTGATAAGGGC 344
BSNT_05396___ 345 TTATGGGAAATCAGTGTCTGAAGGATTAAATCATATAGGTGTTGTAGAAC 394
|||.||.|||||.|||||.||.||..|.||.|||.|.||.|||||.||||
BL03593___yvy 345 TTACGGAAAATCCGTGTCAGAGGGGCTGAACCATGTCGGCGTTGTCGAAC 394
BSNT_05396___ 395 GGAAGCTTATGCGAATCATGCATACTTCTGCAGATTACACATGGCTTGGC 444
..|||||.|||||..|||||||.||..|||...|.||.||||||.|.|||
BL03593___yvy 395 TAAAGCTGATGCGGGTCATGCACACCACTGTGAACTATACATGGATCGGC 444
BSNT_05396___ 445 AAGATTGAAAATGAATTAAGGGAGTCACAATTTCTGTTAAAGGAAATCCA 494
|||.|||||||.||..|..|.|||||.|..|.||...||||.||..|.||
BL03593___yvy 445 AAGCTTGAAAACGAGCTTCGCGAGTCCCCTTATCAAATAAAAGACGTTCA 494
BSNT_05396___ 495 TTATGCGGAAAACGTTGAATTTGAA--GTATACGTAAATGA----GAAAA 538
.|||||.||..|.||.||||||||| |||| ||.||.|| |||||
BL03593___yvy 495 CTATGCAGACGATGTCGAATTTGAAACGTAT--GTCAAGGAAAGCGAAAA 542
BSNT_05396___ 539 ----GAATTT-CAGAATACTCTCAATGGATTTTAA---ATTTAACGAATG 580
|.|||| |.| |||||| ||| |.|||||.||||
BL03593___yvy 543 ACAGGCATTTACGG---------AATGGA---TAACCGAATTAACAAATG 580
BSNT_05396___ 581 GATCA--TGTTATACTAAAAAGGGTATTTTGATATATCTTGAAAAACAAG 628
| || .||.|.|.||.|.|.||.|||....|.|||.|.|||.||....
BL03593___yvy 581 G--CAAGAGTGAGAATAGAGAAGGCATTCAAGTCTATTTGGAAGAAGCTT 628
BSNT_05396___ 629 TTGAAAATCAAAAGGAGAATAAATGA 654
||.|.|||.||
BL03593___yvy 629 TTAATAATTAA--------------- 639
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