Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02363 and BL03589
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_02363___ykuO.1.5803.seq
# -bsequence dna-align/BL03589___ykuO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02363___ykuO-BL03589___ykuO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02363___ykuO-BL03589___ykuO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02363___ykuO
# 2: BL03589___ykuO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 970
# Identity: 624/970 (64.3%)
# Similarity: 624/970 (64.3%)
# Gaps: 152/970 (15.7%)
# Score: 1958.5
#
#
#=======================================
BSNT_02363___ 1 ATGTTTCATAAAGGGGCAACCGCTGTTACGGCATCGGC---GTTTTCTGG 47
||||||||||||||.||.||.||.|| .||.||||| |..|||.||
BL03589___yku 1 ATGTTTCATAAAGGTGCGACGGCCGT---CGCTTCGGCAAAGCATTCCGG 47
BSNT_02363___ 48 ATATTTTGTGGCGGTACAA-AGAGAAGGCATTTTTCATTACTCTTTGGAG 96
.||.|||||.||.|| ||| .|.||||||||||||||.||.||..|.|||
BL03589___yku 48 TTACTTTGTCGCCGT-CAAGCGGGAAGGCATTTTTCACTATTCACTTGAG 96
BSNT_02363___ 97 CAGGGCTGGAGAAAGCTTTTTCGTTTGAAAAGTAAGATACACTGT---AT 143
||.|||||||.||.|||.||||..||.|||||.||.|| .||| ||
BL03589___yku 97 CAAGGCTGGAAAAGGCTCTTTCAATTAAAAAGCAAAAT---TTGTTCCAT 143
BSNT_02363___ 144 CAGCTACATAGGGCCTTACTTATTTGGCGTTGGTGAAAAGGGAACAGTCA 193
||.|||.||.||...|||.|||||.||||..||.||.|..|||||..|.|
BL03589___yku 144 CACCTATATCGGCGATTATTTATTCGGCGCAGGGGAGAGAGGAACGATTA 193
BSNT_02363___ 194 TTCGTTCGGCTGATGAAGGGAAAACCTGGACGATGTCGAGCTTTCCGACA 243
|..|.|||.||||..|||||..|||||||.|.||.||.||||||||||||
BL03589___yku 194 TCAGATCGTCTGACCAAGGGGCAACCTGGTCAATCTCAAGCTTTCCGACA 243
BSNT_02363___ 244 AATGCAACAGTGTGGGCGATTATCGGCAGAAACAACGGGTTTGTCTGCGC 293
||.||.||..|.|||.||||.|..||.||||...||||.|||||.||.||
BL03589___yku 244 AACGCCACGATTTGGTCGATCACGGGGAGAACGGACGGCTTTGTGTGTGC 293
BSNT_02363___ 294 CCACGGTAAGCATTGTATTTATGTATCGGATGATTTTGGTGTCTCATGGC 343
.||.||.||||||||.|||||..||||.||.|||||.||.|||||||||.
BL03589___yku 294 GCATGGGAAGCATTGCATTTACATATCCGACGATTTCGGCGTCTCATGGA 343
BSNT_02363___ 344 GCGTAGCCAAACCTTTTGCCGAATTTCA-TAATCCCCCTGTTATCCGGTC 392
..||.|.|||.||.|||.||| .|||.| |.||||.||.||||||||.||
BL03589___yku 344 AAGTCGTCAAGCCGTTTTCCG-GTTTGAGTCATCCGCCCGTTATCCGCTC 392
BSNT_02363___ 393 GCTATGCCT---TCACGGGGGCAATCTTTTTATCGGCACGCAAATACACG 439
.||.||||| |.|.|.|.|| ||||..|||||.|||||.||.||.|
BL03589___yku 393 TCTGTGCCTCCATGAAGAGCGC---CTTTACATCGGGACGCAGATTCATG 439
BSNT_02363___ 440 AATATTTT----GGCGGCATTTGGGCTTACGA-----CAT--TAAGCG-- 476
|| .| |||||..|||||||.||||| ||| .||.||
BL03589___yku 440 AA----GTGCACGGCGGTGTTTGGGCATACGATTTGGCATCAGAATCGGC 485
BSNT_02363___ 477 -----TGACACTGTCCAAGTTGTCAAAAAAGAAAAAAACCGG----ATGA 517
||| ||||||||| ||||||| ||||
BL03589___yku 486 TTTTATGA--------------TCAAAAAAG----AAACCGGCCGCATGA 517
BSNT_02363___ 518 CGGCATCCATGCTCGTGTTCAATGAA----AATTGGCTGGTGGCGGCGAT 563
|.||.||.|||.|||..|| |||| || ||||||||....|||||
BL03589___yku 518 CCGCCTCGATGATCGCATT---TGAAGGCGAA-TGGCTGGTATGTGCGAT 563
BSNT_02363___ 564 GGGTTCTGTGAAAGGAAAGCACGGTGCTGTCACCGTACGGAATCTTTTG- 612
|||.||....|||||.||.||||||||.||| || ||||
BL03589___yku 564 GGGATCCAAAAAAGGGAATCACGGTGCCGTC--------GA----TTTGG 601
BSNT_02363___ 613 --------------AATGGTGAAGAATTCATCATTCAATCCAG------- 641
||||.|||| ||.|||..|||
BL03589___yku 602 TCAACATTCACACAAATGATGAA---------ATACAAATCAGGCGGGGC 642
BSNT_02363___ 642 CATGATCAGAATAGAAGAATCATTTCTTGATCTTTCAGAGGATGATGGCA 691
|.||.|.||||| |||||||||||.||.|||.|.||.||.||..|.||.|
BL03589___yku 643 CTTGTTGAGAAT-GAAGAATCATTCCTGGATGTGTCCGAAGACAACGGAA 691
BSNT_02363___ 692 TTATATATGTCACTACAACACAAGATGAAAACGGTTTTTCGAGAATTTAC 741
|.||.||||||||..|..|.||.||...|.||||.|||||.|||||.||.
BL03589___yku 692 TCATCTATGTCACATCGGCTCAGGACCGAGACGGCTTTTCAAGAATCTAT 741
BSNT_02363___ 742 CAGGCTGATCTC--------GAAGCCCGATCGTTAAAATGGTTCGATACC 783
|||..||||.|| |.||| |.||||||||.||.||.
BL03589___yku 742 CAGCTTGATTTCTTTGAGAGGGAGC--------TGAAATGGTTTGACACG 783
BSNT_02363___ 784 ATTAAGGGGCATGGATGGAGAGTGGCCAATCAGAAAGAGAATTTCTTTTG 833
||.||.||||||||.|..||.||||||||.||.||.|||||.||||||||
BL03589___yku 784 ATAAAAGGGCATGGGTTCAGGGTGGCCAACCAAAAGGAGAACTTCTTTTG 833
BSNT_02363___ 834 CGCAGG-CTTGTATGAATGTAAATTTGTCCAGCCGTACGAA------GTT 876
|||||| ||| ||||||||.|||||||||..|||.||.||| |.|
BL03589___yku 834 CGCAGGTCTT-TATGAATGCAAATTTGTCAGGCCTTATGAACAGCCTGCT 882
BSNT_02363___ 877 TCAG--CAATGATTCATTAG 894
.||| ||.|||
BL03589___yku 883 GCAGCCCACTGA-------- 894
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