Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02355 and BL03581
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_02355___ykuI.1.5803.seq
# -bsequence dna-align/BL03581___ykuI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02355___ykuI-BL03581___ykuI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02355___ykuI-BL03581___ykuI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02355___ykuI
# 2: BL03581___ykuI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1254
# Identity: 930/1254 (74.2%)
# Similarity: 930/1254 (74.2%)
# Gaps: 63/1254 ( 5.0%)
# Score: 3384.5
#
#
#=======================================
BSNT_02355___ 1 ATGTTGGATCCACTTGATATTTTAACGAACATTGATGATGTCCTTCCATA 50
||||||||||||||.||||||||||||||||||||.||||||.|||||||
BL03581___yku 1 ATGTTGGATCCACTCGATATTTTAACGAACATTGAAGATGTCATTCCATA 50
BSNT_02355___ 51 TTACCAGGCGATTTTTAGTGCCGAGGAGCAGAAGGTTGTCGGATATGAGG 100
.||.|||.||||.||.|||||.||.||.||.|||||..||||.|||||.|
BL03581___yku 51 CTATCAGCCGATCTTCAGTGCTGAAGAACAAAAGGTGATCGGCTATGAAG 100
BSNT_02355___ 101 TGCTTGGACGAATTTTGGCAGATTCAGAAATCCAAAGTCTCGGGCCCTTC 150
||||.||.||.||...||.|||..|.|||.|..|.||.||||||||.||.
BL03581___yku 101 TGCTGGGGCGCATCAAGGTAGAAACTGAAGTGAAGAGCCTCGGGCCGTTT 150
BSNT_02355___ 151 TTTTTAGATGCGGGGATACCCGAAGAATATAAACTAGAGGTTGATAACAG 200
||||..|||.||...||.||.||||||||.||...||||||||||..||.
BL03581___yku 151 TTTTCTGATCCGACAATTCCGGAAGAATACAAGAAAGAGGTTGATCTCAA 200
BSNT_02355___ 201 AATTATCCGCCAGGCTCTTGACCGCTTTTTAGA-----GGCGGATTCTGA 245
..|.|||||||||||.||.||.|..|||.|.|| |||| .||
BL03581___yku 201 GGTGATCCGCCAGGCGCTCGATCATTTTCTGGACAGCGGGCG-----CGA 245
BSNT_02355___ 246 TCTGCTGATTTTTATGAATCAGGATGCCAATCTGCTGATGCTGGATCATG 295
.|||||.||.||..|.|||||.|||||.|||.||||||||.|||||||.|
BL03581___yku 246 CCTGCTCATCTTCGTCAATCAAGATGCAAATGTGCTGATGATGGATCACG 295
BSNT_02355___ 296 GTGAAAGCTTTCTGGAGCTTCTGAAAGAATATGAAGCGAAGGGAATCGAA 345
|.|||...||.||.||.||..|||..||||||.|.|..||.||..||||.
BL03581___yku 296 GCGAATCGTTCCTCGACCTGTTGATGGAATATCAGGATAAAGGGCTCGAG 345
BSNT_02355___ 346 CTCCACCGTTTTGTTCTTGAAATTACAGAGCACAATTTTGAAGGGGATAT 395
|||..||||||.|||.|.|||||.||.|||||.||.||||||||||||||
BL03581___yku 346 CTCAGCCGTTTCGTTATCGAAATCACGGAGCAAAAGTTTGAAGGGGATAT 395
BSNT_02355___ 396 TGAGCAGCTCTACCATATGCTTGCATACTATCGTACATACGGAATTAAAA 445
|||.|||||..|.|||.||||..|.||.||.||||||||||||||||||.
BL03581___yku 396 TGAACAGCTTCATCATTTGCTGACCTATTACCGTACATACGGAATTAAAG 445
BSNT_02355___ 446 TCGCAGTTGACAACATCGGAAAAGAAAGCAGCAACTTGGACAGAATCGCG 495
||||.|||||.||.|||||.||.|||||||||||..|.|||||||||||.
BL03581___yku 446 TCGCTGTTGATAATATCGGTAAGGAAAGCAGCAATCTCGACAGAATCGCT 495
BSNT_02355___ 496 CTGCTCTCACCAGATCTGTTAAAAATCGATTTGCAGGCGCTGAAAGTGTC 545
||.||.||.||.|||||||||||.|||||..|.|||.||||.||..||||
BL03581___yku 496 CTTCTTTCTCCGGATCTGTTAAAGATCGACCTTCAGCCGCTCAAGCTGTC 545
BSNT_02355___ 546 ACAGCCGTCACCGTCATATGAGCATGTGCTGTACAGCATATCTTTATTAG 595
....||.||.||.||.|||||..|||||||.||||||||||||.|..|.|
BL03581___yku 546 TTCTCCTTCGCCTTCCTATGAATATGTGCTTTACAGCATATCTCTCCTTG 595
BSNT_02355___ 596 CAAGAAAAATCGGTGCGGCGCTATTG---TATGAAGACATTGAGGCGAAC 642
|.|||||||||||.||.|| |||| ||||||||.|||||.||||.|
BL03581___yku 596 CCAGAAAAATCGGAGCCGC---ATTGCTTTATGAAGATATTGAAGCGAGC 642
BSNT_02355___ 643 TTCCAGCTACAGTACGCCTGGAGAAACGGAGGCCGTTATTTTCAGGGCTA 692
||.|||||.||.|||||.|||||||||||.|||||.|||||.|||||..|
BL03581___yku 643 TTTCAGCTGCAATACGCATGGAGAAACGGGGGCCGATATTTCCAGGGGCA 692
BSNT_02355___ 693 TTA-CTTGGTGTCTCCATCTG---------AAACGTTTCTAGAGAGAGAT 732
.|| |||| |.||| ||| |||.|.||..|.|||
BL03581___yku 693 GTATCTTG--------AGCTGCCGAAGGATAAA--TTTATCGAACGGGAT 732
BSNT_02355___ 733 GTATTAAAACAAAGACTTAAAACTGAATTTCACCAATTTATCACACATGA 782
||||||||..|..|.||..|..|.||.|||||.|||||.|||||.|||||
BL03581___yku 733 GTATTAAAGGACCGGCTGCAGGCCGAGTTTCATCAATTCATCACGCATGA 782
BSNT_02355___ 783 GAAAAAGAAACTGGAGACC---GTCTATGAGCACTCTGAACAGTTTTACA 829
|||.|||||.|| .||| .|.||.||.|||||.||.||||||||||
BL03581___yku 783 GAAGAAGAAGCT---AACCATTCTGTACGATCACTCCGAGCAGTTTTACA 829
BSNT_02355___ 830 AACGAGTGCATCAGGCTGTGACCTCTTTGAGAAAAAACAATCTGTCT--- 876
||||.||.||||||..|||.||.||..| |.|.||||| |.||
BL03581___yku 830 AACGGGTTCATCAGCTTGTCACATCGCT-AAAGAAAAC-----GGCTCAG 873
BSNT_02355___ 877 TCTGATGATGACTTTATTAAAAAGCTGGCGG--AAGAGCTGACAGATTGC 924
||.||.|||||.|||.|....||.|| ||| ||||.||||||||||||
BL03581___yku 874 TCAGACGATGAATTTCTCTTCAATCT--CGGAAAAGAACTGACAGATTGC 921
BSNT_02355___ 925 AGCTTCAGGATTTACATGTGTGATGAAGAAGGCGATCAGCTGACGGGAAA 974
|||||.||.|||||||||||.||||||||.||...||||||||||..|||
BL03581___yku 922 AGCTTTAGAATTTACATGTGCGATGAAGACGGTATTCAGCTGACGAAAAA 971
BSNT_02355___ 975 TGTGTTTAAGCAAGATGGAGAATGGATTTATCAGCCGGA--ATATGCGGA 1022
.|||||||||||.||.||||.||||||.|.||||||.|| |.|| |||.
BL03581___yku 972 CGTGTTTAAGCATGACGGAGCATGGATATTTCAGCCTGAGTACAT-CGGC 1020
BSNT_02355___ 1023 AAAGAACTGGAGCTGGCGCCCTTATTTTCTGGAGAACATTATGAGAATGA 1072
||| ||.|||||||||||||||||||||||.|||||.||.|||||.||||
BL03581___yku 1021 AAA-AATTGGAGCTGGCGCCCTTATTTTCTCGAGAATATCATGAGGATGA 1069
BSNT_02355___ 1073 GAAATCTCAGAAAAGGTTTTTTCAGTGATCTGTACAGTGATTTGGAAACA 1122
|||...|.||||||||.||||||||.|||.|||||||.|||.|.|||||.
BL03581___yku 1070 GAACGATGAGAAAAGGGTTTTTCAGCGATTTGTACAGCGATATCGAAACG 1119
BSNT_02355___ 1123 GGTGAAATGATCAGAACGTTTTCATATCCGATGGATGATCAGA--TGTAT 1170
||.||||||||||||||||||||.|||||||||||||| ||| |||||
BL03581___yku 1120 GGGGAAATGATCAGAACGTTTTCCTATCCGATGGATGA--AGAATTGTAT 1167
BSNT_02355___ 1171 TTATTTATAGACTTGCCTTATTCTTATTTATATGAGCAGGACGGACTGAT 1220
.|.||.||.|||.||.|.||.||.||||||||.||.||.||||||.|.||
BL03581___yku 1168 CTGTTCATTGACCTGTCCTACTCATATTTATACGAACAAGACGGATTAAT 1217
BSNT_02355___ 1221 TTAA 1224
||||
BL03581___yku 1218 TTAA 1221
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