Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02354 and BL03580

See Amino acid alignment / Visit BSNT_02354 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02354___ykuF.1.5803.seq
#    -bsequence dna-align/BL03580___ykuF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02354___ykuF-BL03580___ykuF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02354___ykuF-BL03580___ykuF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02354___ykuF
# 2: BL03580___ykuF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 801
# Identity:     560/801 (69.9%)
# Similarity:   560/801 (69.9%)
# Gaps:          72/801 ( 9.0%)
# Score: 1879.0
# 
#
#=======================================

BSNT_02354___      1 ATGGAAAAAAAGGCGGTAATTATTACCGGCGGGTCAAGCGGCATGGGAAA     50
                     |||||.|.|||.|..|||||..|.|||||||||||.|||||.||||||||
BL03580___yku      1 ATGGACAGAAAAGTTGTAATCGTGACCGGCGGGTCGAGCGGAATGGGAAA     50

BSNT_02354___     51 AGCGATGGCAAAAAAACAGGCTGAATTAGGGTGGCACGTTATGGTGACAG    100
                     ||||||.||.|||||.|||||||||..|||.|||.|.||.|||.|.|| |
BL03580___yku     51 AGCGATCGCCAAAAAGCAGGCTGAAGAAGGATGGAATGTGATGATTAC-G     99

BSNT_02354___    101 GGAGGAAC-CATGAGGCACTTGAGGAAACAAAAAAAGAAATTCAGACCTT    149
                     ||..|||| ||.||..|.||.||.|...|.|||.||||||||.|.||.||
BL03580___yku    100 GGCAGAACACAAGAAACGCTCGAAGCGGCCAAAGAAGAAATTGAAACTTT    149

BSNT_02354___    150 TGAGGGACAGGTCGCTTGT-TTTCAAATGGATGTCCGTTCCGATTCCGCC    198
                     ||..||.|||||.|| .|| |..|..|||||||||||.||.|        
BL03580___yku    150 TGCCGGGCAGGTGGC-CGTATGCCGGATGGATGTCCGGTCTG--------    190

BSNT_02354___    199 GCTT------------CAGACATGATTAAAGAAGCGGTAAAAGCCTTTGG    236
                       ||            |||  |||||.|.|||.||||.|..|...|||||
BL03580___yku    191 --TTGAAGATGTGGAACAG--ATGATCACAGAGGCGGCAGGACGGTTTGG    236

BSNT_02354___    237 CCGGCTTGACGCGCTGATTAACAACGCGGCCGGAAACTTTATTTGTCCGG    286
                     |..|.|.|||||..||.|||||||.||.||.||.||||||||.||.||||
BL03580___yku    237 CACGATCGACGCTTTGGTTAACAATGCCGCAGGCAACTTTATCTGCCCGG    286

BSNT_02354___    287 CAGAAAAGCTGACGCCCAATGGATGGAAAGCCGTTATTGAGATTGTTTTA    336
                     |.|||||.||..||..|||.||.|||||.||.||.||.||.||.||..|.
BL03580___yku    287 CTGAAAAACTATCGGTCAACGGCTGGAAGGCGGTCATCGATATCGTGCTG    336

BSNT_02354___    337 AACGGCACATTTTTTTGCAGCCAAGCAG-CGGCAAGGC-ATTGGAT---T    381
                     |||||||||||||.|||||||||||||| ||||  .|| |.|||||   .
BL03580___yku    337 AACGGCACATTTTATTGCAGCCAAGCAGCCGGC--CGCTACTGGATCAAG    384

BSNT_02354___    382 GACCAGAA--GCAG-CAGGGTGTCATTTTAAATATGGCAGCCACGTACGC    428
                     ||..||||  ||.| |||      |||||||||||||..||.|||||.||
BL03580___yku    385 GAAAAGAAACGCGGCCAG------ATTTTAAATATGGTCGCGACGTATGC    428

BSNT_02354___    429 TTGGGGAGCGGGAGCGGGGGTCGTTCATTCCGCTGCAGCCAAAGCGGGGG    478
                     .|||||.||.||.||.||.||||||||.|||||.||.||.|||||.||.|
BL03580___yku    429 ATGGGGCGCCGGTGCCGGTGTCGTTCACTCCGCGGCGGCAAAAGCAGGCG    478

BSNT_02354___    479 TATTGTCATTGACAAGAACGCTGGCCGTTGAATGGGGGAGCAAATACGGC    528
                     |..||||..|||||||.|||||.|||||.||.|||||.||...||||||.
BL03580___yku    479 TTCTGTCGCTGACAAGGACGCTTGCCGTCGAGTGGGGAAGTGCATACGGG    528

BSNT_02354___    529 ATT-CGTACAAACGCGATAGCCCCCGGACCGATTGAACGAACAGGCGGTG    577
                     ||| .||.| |||||.||.||.|||||.|||||.||..|.||.|||||.|
BL03580___yku    529 ATTAGGTGC-AACGCCATTGCGCCCGGTCCGATCGAGAGGACGGGCGGAG    577

BSNT_02354___    578 CGGAGAAGCTATTTGAATCGGAAAAAGCGATGGCCCGCACG-----ATGA    622
                     |.||.||..||||||||||||||.||||     |.||||||     ||.|
BL03580___yku    578 CCGAAAAATTATTTGAATCGGAAGAAGC-----CGCGCACGCGACAATCA    622

BSNT_02354___    623 ACAGTGTGCCGCTC----GGCCGATTGGGCACACCGGAGGAAATCGCCGC    668
                     |.||.||.||||||    |||    |||||||.||.||.||||||||.|.
BL03580___yku    623 AAAGCGTTCCGCTCAAAAGGC----TGGGCACCCCTGAAGAAATCGCGGG    668

BSNT_02354___    669 TTTGGCAGCGTTTTTGCTTTCTGATGAAGCATCC----TATATAAACGGG    714
                     ..|.||.||.|||||||||||||    ||||..|    |||.|.||||||
BL03580___yku    669 ACTCGCCGCATTTTTGCTTTCTG----AGCAGGCGGGATATGTCAACGGG    714

BSNT_02354___    715 GATTGTATCACAATGGACGGGGGGCAATGGCTGAATCCTTATCCGTTTTA    764
                     ||.|||.|.||.||||||||.||.||||||||||||||...|||||||||
BL03580___yku    715 GAGTGTGTGACGATGGACGGAGGTCAATGGCTGAATCCCCGTCCGTTTTA    764

BSNT_02354___    765 A    765
                     .
BL03580___yku    765 G    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02354 and BL03580

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
