Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02347 and BL03579

See Amino acid alignment / Visit BSNT_02347 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02347___cheV.1.5803.seq
#    -bsequence dna-align/BL03579___cheV.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02347___cheV-BL03579___cheV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02347___cheV-BL03579___cheV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02347___cheV
# 2: BL03579___cheV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 943
# Identity:     650/943 (68.9%)
# Similarity:   650/943 (68.9%)
# Gaps:          83/943 ( 8.8%)
# Score: 2241.5
# 
#
#=======================================

BSNT_02347___      1 ---------------------------TTGGATTCTGGTACAAATGAATT     23
                                                ||...|||.||.||.||||||||
BL03579___che      1 GTGTCTTCAAACCAACAGGAAATTTTATTAAGTTCGGGAACCAATGAATT     50

BSNT_02347___     24 AGAAATTGTGAAGTTTGGCGTGGG--TGAAAATGCTTTCGGAATTAACGT     71
                     ||||||.||||||||.|..||.||  |.||.||  ||||||.||.||.||
BL03579___che     51 AGAAATCGTGAAGTTCGAGGTTGGTCTCAACAT--TTTCGGCATAAATGT     98

BSNT_02347___     72 CATGAAGGTAAGAGAAATTATTCAGCCTGTCGAGGTGACATCAGTGCCTC    121
                     ||||||.||.||||||||.||||||||.||.||..|.||...||||||||
BL03579___che     99 CATGAAAGTCAGAGAAATCATTCAGCCGGTTGAAATTACGAAAGTGCCTC    148

BSNT_02347___    122 ACTCCCATCAGCATGTAGAAGGAATGATTAAACTCAGAGGAGAAATCCTC    171
                     |.||.|||.|||||.|.||.||.|||||||.|.|..|.||.|||||.||.
BL03579___che    149 ATTCGCATAAGCATATGGAGGGCATGATTACATTGCGCGGGGAAATTCTT    198

BSNT_02347___    172 CCTGTGATCAGTCTCTTCTCATTTTTTGGAGTAGAGC------CTGA--A    213
                     ||.||.||...|.|.|||||.||.|||||.||.||||      .|||  |
BL03579___che    199 CCCGTCATTGATTTATTCTCTTTCTTTGGCGTTGAGCACGGTGATGACGA    248

BSNT_02347___    214 GGATCAAAAGATGAGAAATATATCGTGACTGAATTTAATAAACGGAAAAT    263
                     |.|||||     ||.|||||.||.|||||.||||||||.||.||||||||
BL03579___che    249 GCATCAA-----GAAAAATACATTGTGACGGAATTTAACAAGCGGAAAAT    293

BSNT_02347___    264 TGTTTTTCATGTCGGCTCTGTTTCTCAAATTCACAGAGTATCCTGGGAAG    313
                     .||.|||||....||..|.|||||.||.||||||.|.||.||.|||||||
BL03579___che    294 CGTCTTTCACACTGGAGCGGTTTCACAGATTCACCGGGTGTCATGGGAAG    343

BSNT_02347___    314 CGATTGAAAAGCCGACATCGTTAAATCAAGGAATGGAGCGGCACCTTACC    363
                     ..|||||.||||||||..|.||.||||||||.|||||.||.|||||||||
BL03579___che    344 AAATTGAGAAGCCGACTGCTTTGAATCAAGGGATGGACCGTCACCTTACC    393

BSNT_02347___    364 GGGATTATTAAGCTCGAAG--ACCTGATGATCTTTTTGCCTGACTATGAA    411
                     ||.||.|||||||||||.|  |||  |||||.||..||||.||.||.|||
BL03579___che    394 GGCATCATTAAGCTCGACGGCACC--ATGATTTTCCTGCCAGATTACGAA    441

BSNT_02347___    412 AAAATTATTTATGACATTGAATCAGATTCAGGTGTTGACACGTATAATAT    461
                     |||||.||||.|||..||||.||.||.||||||.|.|||.|.|||.|.||
BL03579___che    442 AAAATCATTTTTGATCTTGAGTCTGAGTCAGGTATGGACCCTTATCAAAT    491

BSNT_02347___    462 GCATACCGAGGGCTTCGATGAAAGAAGAACTGATAAAAAGCTTATCATTG    511
                     |.|.|..||....||||||.|.|||.|.|||||.||||||||.|||||||
BL03579___che    492 GAAAAATGAAAAATTCGATCAGAGACGGACTGACAAAAAGCTGATCATTG    541

BSNT_02347___    512 TAGAGGACTCACCGCTTTTGATGCGCCTCTTGCAGGA-----TGAATTAA    556
                     |.||||||||.|||||..|..||||.||.|||..|||     |||||   
BL03579___che    542 TCGAGGACTCTCCGCTCCTCTTGCGGCTATTGGTGGAAAAGCTGAAT---    588

BSNT_02347___    557 AAGAAGCAGGGTACAACAACATCGCTTCGTTTGAAAATGGAAAAGAGGCA    606
                       |||||.||.|||||||||||||..||.||||||||.||||||||.||.
BL03579___che    589 --GAAGCGGGATACAACAACATCGTGTCTTTTGAAAACGGAAAAGACGCT    636

BSNT_02347___    607 TATGAATAC--------ATT-ATGAACCTTGCTGAAAACGAAACTGATTT    647
                     ||.||..||        ||| |||         |||.|||..||.|.|.|
BL03579___che    637 TACGAGCACGCGCTTCAATTGATG---------GAAGACGGCACAGCTCT    677

BSNT_02347___    648 ATCA-GAACAGATTGATATGATCATCACTGATATTGAAATGCCAAAAATG    696
                      ||| |||.|..|.|||.||||.|||||.||||||||||||||..|.|||
BL03579___che    678 -TCACGAAAAAGTCGATCTGATGATCACGGATATTGAAATGCCGCAGATG    726

BSNT_02347___    697 GACGGACACAGGCTCACAAAGCTGCTGAAGGAAAATCCGAAAAGCTCAGA    746
                     ||.||||||.||||||||||||||||.||.||.||.|||...||..|.||
BL03579___che    727 GATGGACACCGGCTCACAAAGCTGCTAAAAGATAACCCGCTGAGTACGGA    776

BSNT_02347___    747 TGTGCCGGTTATGATTTTCTCATCGTTAATTACGGATGATCTGCGTCACC    796
                     ..|||||.|..||||||||||.||.||.|||||.||.|||||.||.||..
BL03579___che    777 GCTGCCGATCTTGATTTTCTCTTCTTTGATTACAGACGATCTTCGCCATA    826

BSNT_02347___    797 GCGGCGAAGTTGTAGGCGCAGATGAGCAAATCAGCAAGCCTGAGATCAGT    846
                     ..||.|||...||.||.||.|||||.||||||||||||||.|||.|||.|
BL03579___che    827 AAGGGGAACAAGTCGGAGCCGATGAACAAATCAGCAAGCCAGAGCTCAAT    876

BSNT_02347___    847 GATTTGATTAAAAAAGTGGATACGTATGTTATTGAATAA----    885
                     ||..||||..||||..|.||||..|||.|| ||.||.||    
BL03579___che    877 GAACTGATCGAAAAGCTTGATAAATATATT-TTCAAGAACTAA    918


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