Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02337 and BL03574

See Amino acid alignment / Visit BSNT_02337 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_02337___ykwC.1.5803.seq
#    -bsequence dna-align/BL03574___ykwC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02337___ykwC-BL03574___ykwC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02337___ykwC-BL03574___ykwC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02337___ykwC
# 2: BL03574___ykwC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 884
# Identity:     645/884 (73.0%)
# Similarity:   645/884 (73.0%)
# Gaps:          28/884 ( 3.2%)
# Score: 2243.5
# 
#
#=======================================

BSNT_02337___      1 TTGAAAAAAACAATTGGTTTTATCGGTCTTGGAGTGATGGGAAAGAGCAT     50
                     .||||||||||..|.||.||||||||.||.||.||.||||||||.|||||
BL03574___ykw      1 ATGAAAAAAACGGTCGGATTTATCGGACTCGGTGTAATGGGAAACAGCAT     50

BSNT_02337___     51 GGCATCACATATTCTGAATGACGGCCACCCTGTTTTGGTGTACACCCGGA    100
                     |||.||.||.|||.|....|..|||.|.||.||....|..||.||..|.|
BL03574___ykw     51 GGCCTCGCACATTTTAGCCGCGGGCTATCCCGTCAGCGCCTATACGAGAA    100

BSNT_02337___    101 CAAAAGAAAAAGCAGAAAGCATACTTCAAAAAGGCGCGATCTGGAAA-GA    149
                     |.|||.|.|||||.||.|||.|..|..|||||||.|||...|||||| .|
BL03574___ykw    101 CGAAACACAAAGCGGACAGCCTCGTGGAAAAAGGGGCGGAATGGAAATCA    150

BSNT_02337___    150 TACGGTCAAAGATCTTTCGAAAGAAG-CGGATGTCATCATTACAATGGTC    198
                     | |.|||||||..||..|| .||..| |.|||||.|||||.|||||||||
BL03574___ykw    151 T-CCGTCAAAGCACTGGCG-CAGTCGTCTGATGTGATCATCACAATGGTC    198

BSNT_02337___    199 GGCTATCCCAGTGATGTTGAAGAAGTGTATTTCGGAAGCAATGGAATTAT    248
                     |||||.||.|..||.||||||||.||.||.||.||||||.|.||.|||||
BL03574___ykw    199 GGCTACCCAAAAGACGTTGAAGAGGTTTACTTTGGAAGCGAAGGCATTAT    248

BSNT_02337___    249 TGAAAACGCAAAAGAAGGCGCATATCTTATTGATATGACGACATCTAAGC    298
                     ||||||.||.|||.||||..|.||.|||||.|||||||||||.||.||.|
BL03574___ykw    249 TGAAAATGCCAAAAAAGGTTCCTACCTTATCGATATGACGACTTCCAAAC    298

BSNT_02337___    299 CTTCGCTTGCGAAGAAGATTG---CTGAAGCGGCCAAAGAAAAAGCATTG    345
                     ||||||||||.||..|.||.|   ||   ||.||.|||||.||||.|.|.
BL03574___ykw    299 CTTCGCTTGCCAAACAAATCGAGACT---GCCGCAAAAGAGAAAGGACTT    345

BSNT_02337___    346 TTCGCTTTAGACGCTCCTGTTTCCGGTGGAGACGTCGGTGCACAAAACGG    395
                     |.||||||.||.|||||.|||||.||.||.||||||||.||....|||||
BL03574___ykw    346 TACGCTTTGGATGCTCCGGTTTCAGGCGGGGACGTCGGCGCGAGGAACGG    395

BSNT_02337___    396 AACACTCGCGATTATGGTCGGTGGAGAAAAAGAAGCTTTTGAAGCCTGCA    445
                     .||.|||||.||.||||||||.||||||....||||||.|||    ||.|
BL03574___ykw    396 CACGCTCGCTATCATGGTCGGAGGAGAACGGAAAGCTTATGA----TGAA    441

BSNT_02337___    446 TG----CCGATTTTCTCTTTAATGGGAGAGAATATTCAGTATCAAGGATC    491
                     ||    |||.|.||.||..|.|||||.||.||.||.||||||||.||..|
BL03574___ykw    442 TGCTACCCGCTCTTTTCGATCATGGGTGAAAACATCCAGTATCAGGGGCC    491

BSNT_02337___    492 GGCTGGAAGCGGACAGCATACCAAGATGTGCAATCAGATTGCAATTGCAG    541
                     |||.||||||||.||||||||.||.||||||||.||||||||.|||||.|
BL03574___ykw    492 GGCCGGAAGCGGCCAGCATACGAAAATGTGCAACCAGATTGCGATTGCCG    541

BSNT_02337___    542 CCGGTATGATCGGTGTTGCTGAAGCGATGGCTTATGCCCAAAAATCAGGT    591
                     |.||.||||||||.||.||.|||||||||||.||.|||.|||||||.||.
BL03574___ykw    542 CAGGGATGATCGGCGTCGCAGAAGCGATGGCCTACGCCGAAAAATCCGGA    591

BSNT_02337___    592 CTAGAGCCGGAAAATGTTCTGAAAAGCATCACAACGGGCGCAGCCGGAAG    641
                     ||.||.||.||.||.||.|||||||||||.||.||.|||||.||.|||||
BL03574___ykw    592 CTCGATCCCGACAACGTGCTGAAAAGCATTACGACCGGCGCTGCGGGAAG    641

BSNT_02337___    642 CTGGTCATTGTCAAATCTTGCTCCCCGTATGCTGCAAGGCAACTTTGAAC    691
                     ||||||..|.||||||||.||.||..|.||||||.|||||.|||||||||
BL03574___ykw    642 CTGGTCGCTCTCAAATCTAGCGCCTAGAATGCTGAAAGGCGACTTTGAAC    691

BSNT_02337___    692 CGGGATTTTATGTGAAGCATTTTATTAAGGATATGGGAATTGCACTAGAG    741
                     ||||.|||||.||.||.||.|||.||||.||.|||||.||.||.||.||.
BL03574___ykw    692 CGGGTTTTTACGTCAAACACTTTGTTAAAGACATGGGCATCGCGCTTGAA    741

BSNT_02337___    742 GAAGCAGAATTAATGGGGGAAGAAATGCC-AGGCTTGTCGCTCGC-AAAA    789
                     ||.||.||..|.|||||.||..||||||| .||||.| .|||.|| ||||
BL03574___ykw    742 GAGGCGGAGCTGATGGGCGAGAAAATGCCGGGGCTCG-AGCTTGCGAAAA    790

BSNT_02337___    790 TCCTTATATGACAAGCTAGCTGCTCAAGGTGAAGAAAACAGCGGAACACA    839
                     .|||| ||.||||..||.|.||...||||.||||||||||||||.||.||
BL03574___ykw    791 GCCTT-TACGACACCCTTGTTGAAAAAGGCGAAGAAAACAGCGGCACCCA    839

BSNT_02337___    840 GAGTATATATAAGCTTTGG------GTGAAATAA    867
                     .|||.|.||.|||||||||      ...||||||
BL03574___ykw    840 AAGTCTGTACAAGCTTTGGACAGAATACAAATAA    873


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02337 and BL03574

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
