Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02335 and BL03572
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_02335___mcpC.1.5803.seq
# -bsequence dna-align/BL03572___mcpC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02335___mcpC-BL03572___mcpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02335___mcpC-BL03572___mcpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02335___mcpC
# 2: BL03572___mcpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2119
# Identity: 1371/2119 (64.7%)
# Similarity: 1371/2119 (64.7%)
# Gaps: 302/2119 (14.3%)
# Score: 3979.5
#
#
#=======================================
BSNT_02335___ 1 TTGTTTAAAAAACTTCACATGAAGATTGCTGTTTTTGTTTC--------- 41
||||||||||||||.||..|.||.|||||.|..||||||.|
BL03572___mcp 1 TTGTTTAAAAAACTGCATGTCAAAATTGCCGGATTTGTTGCCGTCCTGCT 50
BSNT_02335___ 42 GATTAT----GTTAATCGTC--ACAGTTGTTCTTTTAATGCT-GTCTTCT 84
|.||.| ||| |||||| |||||| || |.|..|.
BL03572___mcp 51 GGTTTTGACGGTT-ATCGTCCTACAGTT------------CTCGACAACA 87
BSNT_02335___ 85 TATTTGACGCTAAAACCGATGATTACAGAGGATG-GGAAAAATACAACTC 133
.|||| |.|.|||.|||||.|| ||.|||| ||.|||| .|.||
BL03572___mcp 88 CATTT---GTTGAAATCGATGCTT---GAAGATGAGGCAAAA---GAATC 128
BSNT_02335___ 134 AAAACGTGACGCAG----------TCACTTGAACAAAATATTGAATTGCA 173
||||| .||| |||.||.||..|||||||||..|.||
BL03572___mcp 129 --AACGT---CCAGCCTCCTCGGTTCAATTAAAAGAAATATTGAGCTTCA 173
BSNT_02335___ 174 ATTA-AAGAGTTATGCCATTTCGTT--ATC----AAGATTGGCTAATGGG 216
|||| ||.| .||.|..|||||.|| ||| ||| |.||||.
BL03572___mcp 174 ATTAGAACA-CTACGAGATTTCTTTGAATCGTATAAG------TGATGGA 216
BSNT_02335___ 217 GAATTAACGCATACATTTGTA----ACG-----AAACCAAGTA-AAGAAG 256
|||.|..|.||..||||..|| ||| ||...||.|| ||.||
BL03572___mcp 217 GAAATGGCTCACTCATTCTTAAAAGACGGGGATAATAAAATTATAAAAA- 265
BSNT_02335___ 257 TTGCTCGGCTGTTTC-ACGATGACATT-AAGCAAATCAAAGATAACGATG 304
||| || |.||||| ||| ||.|||.|.|||||.||..|||
BL03572___mcp 266 ----TCG------TCAATGATGA-ATTAAAACAATTAAAAGAAAAAAATG 304
BSNT_02335___ 305 ATTATGTTGCGA--TGGCTTACATAGGCACCGCAAAAAAA----GAAATG 348
|.||||| |.| |.|||||.||.||||| |||||| ||||||
BL03572___mcp 305 AGTATGT--CAATTTAGCTTATATCGGCAC----AAAAAAGAAGGAAATG 348
BSNT_02335___ 349 TTTACATATCCAAAAGCGGATTTCGCTGAGGATTATGATCCAGCATCAAG 398
|||||||.|||.|||.||...||.|.|||.||||||.||||.||...|||
BL03572___mcp 349 TTTACATTTCCGAAAACGACCTTTGATGATGATTATAATCCGGCTGAAAG 398
BSNT_02335___ 399 ACCATGGTATAAGCTTGCAGCTG---AAACCCCGGATCAAGTTGTTTGGA 445
.||||||||||.| .|||||| ||||.||.||..||||.|||||||
BL03572___mcp 399 GCCATGGTATACG---TCAGCTGCAAAAACACCCGACAAAGTCGTTTGGA 445
BSNT_02335___ 446 CGGAACCTTATAAAGATGTCGTGACAGGAGACATGATTGTTACTGCATCG 495
||||||||||.|||||||..||..|.|||||.||||..||||||||..|.
BL03572___mcp 446 CGGAACCTTACAAAGATGCGGTTTCCGGAGATATGACAGTTACTGCGGCA 495
BSNT_02335___ 496 AAAGCGATCTTAGACGGGCAA----AAAG-TGATAGGGGTTGCCAGCTAT 540
|||||.|||.| .|.||| |||| ||| |||.||||.||| |||
BL03572___mcp 496 AAAGCCATCGT----CGTCAATAATAAAGTTGA-AGGCGTTGTCAG-TAT 539
BSNT_02335___ 541 -GACTTG-----AAACTCTCTGCTATCCAGAGTATGGTCAATAAACAAAA 584
|||||| .||.||..|| |.|.|.|.|| ||.|.||.|||||
BL03572___mcp 540 AGACTTGTCATTGAATTCATTG--AACAAAATTA---TCGAAAATCAAAA 584
BSNT_02335___ 585 GGTGCCTTACAATGGATTTGCCT---TTTTAG-CTGATACGAGCGG-CAA 629
|.|||||||..|.||.|..||.| ||||.| |..|.||| || |||
BL03572___mcp 585 GATGCCTTATGACGGCTACGCATTTATTTTGGACCAAAACG---GGACAA 631
BSNT_02335___ 630 T-CTTTTAGCCCATCCGTCAAATCAAGGAAAAAATATATCAAAGGATCAA 678
| | |.|||||.||||||||.||.||..|..|||||||.||.|||.||
BL03572___mcp 632 TGC---TCGCCCACCCGTCAAAACAGGGCGACGATATATCGAATGATAAA 678
BSNT_02335___ 679 ACA---CTGCAAACCATC---GCATCCGAGAAAAAAGGGATACAAGATGT 722
||| |.|.| |||| .|||| ||||.|.|||..||| .
BL03572___mcp 679 ACATATCGGGA---CATCCCGTCATC----AAAAGACGGAATCAA----A 717
BSNT_02335___ 723 GAATGGAAAAATGGTTGTG------TACCAAACGATTGGCGAAACGGGCT 766
|.|.|.|||.|| ..|||| ||.||.||..|.||||..|||||||
BL03572___mcp 718 GTAGGCAAAGAT-ACTGTGATCGCTTATCAGACTGTCGGCGGTACGGGCT 766
BSNT_02335___ 767 GGAAGGTCGGAACGCAATTTGATAC--CGATCAATTAATGTGGATTTCAG 814
||||.|||||.|||||.||.||.|| ||| |..|.||||||.|..|..
BL03572___mcp 767 GGAAAGTCGGTACGCAGTTCGACACGGCGA--AGCTGATGTGGGTCGCGC 814
BSNT_02335___ 815 ATAAAATGAATCGGGCAAA----TCTTTGGAT-------ATCATTGCT-- 851
|..||||||| |||| ||.|| || |||||||||
BL03572___mcp 815 AGGAAATGAA-----CAAAATGGTCATT--ATCGTTTCAATCATTGCTCT 857
BSNT_02335___ 852 ---TGCGCTTATCATAACAATTATTCTCAGCTACTTCCTGGCCAAAACGA 898
.||| .|.||.|||.|.|||||.|||.|.||||||||||
BL03572___mcp 858 GGCAGCG---------GCGATCATTTTAAGCTATTTCGTTGCCAAAACGA 898
BSNT_02335___ 899 TAACCGGTCCGATACAGCAGCTGATCGCAAAAACGAAAGCTGTTTCCGCA 948
|.||.||.|||||..||||||||||.||.|||||.|||||.||..|.|..
BL03572___mcp 899 TCACAGGCCCGATTAAGCAGCTGATTGCCAAAACAAAAGCAGTCGCTGGC 948
BSNT_02335___ 949 GGCGATTTAACAGTGC-----GC-GCGGAATCAAAATCTAAGGATGAAGT 992
||||||||.||.||.| || ||.|..|||||| ||||||.|
BL03572___mcp 949 GGCGATTTGACGGTCCAAACAGCAGCTGCCTCAAAA------GATGAAAT 992
BSNT_02335___ 993 CGGTATTTTAACAAGAGATTTCAATCTGATGGTTGAAAATATGAAGGAAA 1042
||||||.||.||||.|||.||.||...||||||.|||.|||||||.||||
BL03572___mcp 993 CGGTATATTGACAAAAGACTTTAACAAGATGGTCGAACATATGAAAGAAA 1042
BSNT_02335___ 1043 TGGTTGAGCAAGTGAGACTC-TCTTCAGGGAAAGTATCTGACACCTCTGA 1091
||.|||.||||||.||| || ||.||.||.||||||||.||.||..|.||
BL03572___mcp 1043 TGATTGTGCAAGTCAGA-TCATCGTCCGGAAAAGTATCGGATACGACCGA 1091
BSNT_02335___ 1092 ACAACTAACGGCTGTCTCTGCCGAAAC---TAATGAAACAAGCGGACAAA 1138
.|||.|||..|||||.||.|..||.|| |..|| |.||||...|||
BL03572___mcp 1092 TCAATTAAGCGCTGTTTCAGAAGAGACGGTTTCTG---CGAGCGATGAAA 1138
BSNT_02335___ 1139 TTGCAAAAGCGATTGAAGAAGTAGCCGCAGGAGCATCGGAACAGGCTTCT 1188
|.||.|||||.||.||||||||.||..||||.||..|.||||||||..||
BL03572___mcp 1139 TCGCCAAAGCAATCGAAGAAGTGGCGACAGGCGCGACTGAACAGGCGGCT 1188
BSNT_02335___ 1189 GAAGTTGAAACCATTAATGAAAAATCGGAAAGCCTGTCAACGAAAATCAG 1238
||.||.||||...|.||||||.||||.|||.|.|||||....|||||.|.
BL03572___mcp 1189 GAGGTCGAAAATGTCAATGAACAATCCGAACGGCTGTCTGTCAAAATTAA 1238
BSNT_02335___ 1239 GCAAATCGCTGAGGAGGCAGGCGGAATTAAAGAACGTTCAAAATCGTCCG 1288
..||||||...|..|.||.|.|.|.||.||..|||.|||.|.|.|.||.|
BL03572___mcp 1239 AGAAATCGAACATCATGCCGACAGCATCAAGAAACTTTCGAGAACATCAG 1288
BSNT_02335___ 1289 AGGATGCAAGCTATAAAGGACTTGACGCGCTCGGCCAGCTGCTGATG--A 1336
|.||.||||||||||.||||.|.||.||.|||||.|||||||| || |
BL03572___mcp 1289 AAGAAGCAAGCTATACAGGAATCGATGCCCTCGGGCAGCTGCT--TGCAA 1336
BSNT_02335___ 1337 AATCAAACGAAGCCAATATGGAAACGAAAAAGGTTGAAACGATGCT---- 1382
|.|||||.|||||.||...|||.||.||.||.||.|||...|||||
BL03572___mcp 1337 AGTCAAATGAAGCAAACTCGGAGACAAAGAAAGTGGAACATATGCTATTC 1386
BSNT_02335___ 1383 --GCTGGATTTGGAAAATCAAACTAAGAATATTGAAGAAGTCGTTACAGC 1430
|||.|| .|||| ||||.||.||.||||||||.||.||||||||
BL03572___mcp 1387 CAGCTTGA---AGAAA---AAACGAAAAACATTGAAGACGTTGTTACAGC 1430
BSNT_02335___ 1431 GATTTCAAACATATCTGATCAAACCAACTTGCTTGCCTTAAATGCCAGTA 1480
.||.||....||.||||||||.||.|||.|||||||..|.||.|||||.|
BL03572___mcp 1431 CATCTCGGCGATCTCTGATCAGACAAACCTGCTTGCTCTGAACGCCAGCA 1480
BSNT_02335___ 1481 TTGAGGCAGCCAGAGCCGGAGAAAGCGGGCGCGGTTTTGCCGTCGTAGCC 1530
||||.||.|||.|.||||||||||||||.|||||||||||.||.||.||.
BL03572___mcp 1481 TTGAAGCGGCCCGTGCCGGAGAAAGCGGACGCGGTTTTGCGGTAGTTGCA 1530
BSNT_02335___ 1531 GATGAAGTGCGGAAGTTAGCTGAGCAATCAGCCCTTTCTACAAAGCATAT 1580
||.||.|||.|.|||.|.|||||.|||||.||..|||||.||.||||.||
BL03572___mcp 1531 GAAGAGGTGAGAAAGCTTGCTGAACAATCGGCGGTTTCTTCACAGCACAT 1580
BSNT_02335___ 1581 CAGCGAGACTGTGAAGCTTATCCAGCTTGAGACAAAAGAGGCC-TCTCAC 1629
|||.||.||.||.||.|..||.|||.|.||.||.|||||.||| |.|||
BL03572___mcp 1581 CAGTGAAACGGTCAAACAGATTCAGATGGAAACGAAAGAAGCCGTTTCA- 1629
BSNT_02335___ 1630 GCGATGGTTGAGGCAAGCAGAATGAATGATGAACAAAA--CAGTGCCATT 1677
||||||...||.|||||||..||||||||.|..||||| .|.|| |||
BL03572___mcp 1630 GCGATGACAGAAGCAAGCAAGATGAATGAAGTGCAAAATGGAATG--ATT 1677
BSNT_02335___ 1678 CACGAAACTGGAGAGG----TATTAAATACGATAACTGCAGAAATGCAGT 1723
||||||||.||.||.| .|..||| ||.|||||.|||||||||.
BL03572___mcp 1678 CACGAAACAGGTGAAGCGCTCAGCAAA----ATTACTGCTGAAATGCAGG 1723
BSNT_02335___ 1724 CACTGGTACAAGGT--ATTGATCACATTTACGCGGAAAT-TCAAAGA-AT 1769
|.||.|| ||| .| |||||.||||||||..|.||||| || .|| ||
BL03572___mcp 1724 CGCTCGT-CAA-CTCAATTGACCACATTTATTCTGAAATCTC--GGATAT 1769
BSNT_02335___ 1770 GAGTGAAGAACAGC-------TTGCGATTTCTGAAGCTATTCAAAGCATT 1812
|||.|.|||.|||| .|.||||| |.|||||.||||||
BL03572___mcp 1770 GAGCGGAGAGCAGCAAAAAATGTCCGATT-------CGATTCAGAGCATT 1812
BSNT_02335___ 1813 TCAGCCATATCACAGGAATCAG-CTGCCGCAGCAGAGGAA---GTGAACG 1858
||||||||.||.||| ||| |||||||.||.|.|||| ||.|.||
BL03572___mcp 1813 TCAGCCATTTCCCAG----CAGTCTGCCGCGGCTGCGGAAGAGGTCAGCG 1858
BSNT_02335___ 1859 CATCAACCGATGAACAGCTTGTCA-CCCTTGATAAAG--TCAAACACTCA 1905
|.||..||.|.||.|||| ||.|| |.||.| |||| ||..|.|.||.
BL03572___mcp 1859 CTTCGGCCAACGAGCAGC-TGACAGCGCTGG--AAAGCATCGCAAAATCG 1905
BSNT_02335___ 1906 ACGGAAACACTAAAACATGCAAGCCAAGAACTTATGAACA------CAAT 1949
.|.|||.|.||.|...|.||.|.||||||| ||||.|| | ||||
BL03572___mcp 1906 GCTGAAGCGCTGAGCGAGGCCAACCAAGAA-TTATTAA-ATGCGATCAAT 1953
BSNT_02335___ 1950 TGCAAAATTCACATTGTAA 1968
||.||.|...|||||
BL03572___mcp 1954 ----AAGTTTAACGTGTAA 1968
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