Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02323 and BL03561
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_02323___ykvY.1.5803.seq
# -bsequence dna-align/BL03561___ykvY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02323___ykvY-BL03561___ykvY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02323___ykvY-BL03561___ykvY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02323___ykvY
# 2: BL03561___ykvY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 802/1151 (69.7%)
# Similarity: 802/1151 (69.7%)
# Gaps: 112/1151 ( 9.7%)
# Score: 2687.0
#
#
#=======================================
BSNT_02323___ 1 GTGAATAGAATACAACGCGTCTCTTCATGGCTGAAGGAAGCGGGG----- 45
.||.|.|||||..|||...|||||||.||||||||.|||
BL03561___ykv 1 ATGGAAAGAATTGAACAAATCTCTTCCTGGCTGAAAGAA------AAAAA 44
BSNT_02323___ 46 CATA-CTGCCGCATTTATTCATACAAAAGAAAATGTTTTTTA-CTTAACC 93
|||| ||.|.||.|||||||||.||||||||||.||.||||| ||| |||
BL03561___ykv 45 CATATCTTCGGCTTTTATTCATTCAAAAGAAAACGTATTTTATCTT-ACC 93
BSNT_02323___ 94 GGTTTTTACACAGAGCCGCATGAAAGATTAATGGG-GTTATTTATTTTTC 142
||.|||||.|||||.|||||||||.|..|.||||| ||| ||||||||||
BL03561___ykv 94 GGCTTTTATACAGAACCGCATGAACGGCTGATGGGCGTT-TTTATTTTTC 142
BSNT_02323___ 143 AAGAAGAGGAGCCTTTCTTTGTTTGTCCAGGAATGGAAGCAGGACAGGC- 191
||||.||.|||||.||.|||||||||||...||||||.||.||.|||||
BL03561___ykv 143 AAGATGAAGAGCCGTTTTTTGTTTGTCCGCAAATGGAGGCCGGTCAGGCG 192
BSNT_02323___ 192 -CCGCAACGCAGGCTGGAATCATGAAATCATTGGCTATGCGGATCACGAA 240
..||| ||.||||||....||||.|||||.||.||.|.||||||..||
BL03561___ykv 193 AGAGCA--GCCGGCTGGGCGTATGAGATCATCGGATACGGGGATCATCAA 240
BSNT_02323___ 241 AATCCGTGGGAGCTGATA----GAGAAGGCTTTGAAAAAGCGAAATATCA 286
||.||.|||||.||.||| .|| .|||| .|||||||||| |.
BL03561___ykv 241 AACCCTTGGGAACTCATATCCTCAG--CGCTT--CAAAAGCGAAA---CG 283
BSNT_02323___ 287 GCATACATATGCTT-------GCGGTAGAAAAGGATTCAATCTCGCTGTC 329
|| || |||.|| |||||.|||||.||..|..|..|.||.||
BL03561___ykv 284 GC---CA-ATGTTTAAAAGTGGCGGTTGAAAAAGAAACGCTTGCTCTTTC 329
BSNT_02323___ 330 ACGTGCAGAACAGCTGAAGCATGCG-------ACGG-GCGGGGCTCAATT 371
.||.||.|||..||| |||.||| |||| ||||.|| |
BL03561___ykv 330 GCGCGCCGAAATGCT---GCAGGCGGTCACAAACGGTGCGGAGC-----T 371
BSNT_02323___ 372 TGTTTCAGCAGAAGAAACACTCAATCAATTTCGCCTGATTAAAGATGACA 421
|||.||.||||||||||..||.||.|||.|.|||.|.||.|||||.||.|
BL03561___ykv 372 TGTCTCTGCAGAAGAAAGGCTGAACCAAATCCGCGTCATCAAAGACGAAA 421
BSNT_02323___ 422 ATGAGAT-----TCGTTTGCTGAAAGAGGCGGCAAAGCTTGCGGATTACG 466
|.||.|| ||.|..|| ||.|||||.||||||||.|||||||
BL03561___ykv 422 AAGAAATCAGCATCCTCCGC-----GAAGCGGCCAAGCTTGCCGATTACG 466
BSNT_02323___ 467 GTGTTGAAGTCGGCACAGCCGCTTTGCGTGAAGGCATCAG-TGAAGTGGA 515
|.||.||||..||..|.|||||.||....||.||.|| || .|||.|.||
BL03561___ykv 467 GGGTCGAAGCAGGAGCCGCCGCATTAAAAGAGGGGAT-AGCGGAAATCGA 515
BSNT_02323___ 516 AGTGCTCGCTCAAATTGAGTATGAGCTGAAGAAAAAAGGAATTCAGGGCA 565
.||..|||||.||||.||||||||||||||||||||||||.|.|||||.|
BL03561___ykv 516 TGTCGTCGCTAAAATCGAGTATGAGCTGAAGAAAAAAGGAGTCCAGGGGA 565
BSNT_02323___ 566 TGTCTTTCTCTACAATGGTTTTATTCGGAGAAAAATCTGGCCAGCCTCAT 615
||||.||.||.||||||||..|.||.|||||||||||.||.|||||.||.
BL03561___ykv 566 TGTCGTTTTCCACAATGGTCCTTTTTGGAGAAAAATCGGGACAGCCGCAC 615
BSNT_02323___ 616 GGAAATCCTGGTACAGCC--ACGTTGAAAAAAGGTGATTTTGTTTTATTT 663
|||||.||.|| ||||| |||.|.||....||.|||||.||..|.|||
BL03561___ykv 616 GGAAACCCCGG--CAGCCGGACGCTCAAGCCGGGCGATTTCGTCCTCTTT 663
BSNT_02323___ 664 GATCTCGGTGTTATTCTTGATGGCTATTGCTCTGATATTACAAGAACGTT 713
|||.|.|||||.||..||||.||.||.|||||||||||||||||.|||.|
BL03561___ykv 664 GATTTAGGTGTAATCATTGACGGATACTGCTCTGATATTACAAGGACGCT 713
BSNT_02323___ 714 --TGCATACAAAA------CCATCAATCCGAAGCAGGAGGCCATTTACGA 755
||.|| ||||| |.| .||.||..|.|..||.||..|
BL03561___ykv 714 CGTGTAT-CAAAATGTGAGCGA-------AAAACAAAAAGAAATATATAA 755
BSNT_02323___ 756 GACTGTGCTTCAAGCGGAAAAAGCCGCGATTGAGGCAAGCAAACCCGGTG 805
.||.|||||||||||.||||..|..|||.||.||...|||||||||||||
BL03561___ykv 756 TACGGTGCTTCAAGCCGAAACGGAGGCGCTTAAGATGAGCAAACCCGGTG 805
BSNT_02323___ 806 TGAGAATCGGAGATCTGGATTTAACTGCCCGCGGAATCATTGAAAAAGCG 855
||||||||||.|||||.|||||||..||.|||||.|||||.|||||||||
BL03561___ykv 806 TGAGAATCGGCGATCTTGATTTAAAAGCGCGCGGCATCATCGAAAAAGCG 855
BSNT_02323___ 856 GGATACGGTGACTATTTTCCTCACCGGCTTGGGCATGGACTCGGAATTTC 905
||.|||||.||.||.|||||.|||||.||.|||||.||.|||||.|||||
BL03561___ykv 856 GGCTACGGCGATTACTTTCCGCACCGCCTAGGGCACGGGCTCGGGATTTC 905
BSNT_02323___ 906 TGTC-CATGAGTATCCATCCATGAGCCAGGCCAACGATACACTGCTGCAG 954
|.| |||||.||.||.|||||||||||...|||.||...|||..||.|.
BL03561___ykv 906 -GCCTCATGAATACCCGTCCATGAGCCATAACAATGACGAACTTTTGAAA 954
BSNT_02323___ 955 GAAGGCATGGTCTACACGATCGAACCGGGGATATATGTGCCTGAGATCGG 1004
.||||||||||.||||||||.|||||.||.||.||||||||.||.|||||
BL03561___ykv 955 CAAGGCATGGTATACACGATTGAACCCGGCATCTATGTGCCGGAAATCGG 1004
BSNT_02323___ 1005 CGGCGTGCGCATTGAGGATGACGTTCACGTAACAAAGGAAGGAGCAGTTG 1054
.|||||.|||||.||||||||.||.|..||.|||...||.|||||||..|
BL03561___ykv 1005 AGGCGTTCGCATCGAGGATGATGTACTTGTTACAGCCGATGGAGCAGAAG 1054
BSNT_02323___ 1055 CTCTGACCCAATATCCAAAGGA----------ATTAATCATACTGCCGTA 1094
|.|||||..|.||||||||.|| ||| |||||.
BL03561___ykv 1055 CGCTGACAAAGTATCCAAAAGAGCTGACTGTCATT--TCATAA------- 1095
BSNT_02323___ 1095 A 1095
BL03561___ykv 1095 - 1095
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