Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02320 and BL03560

See Amino acid alignment / Visit BSNT_02320 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence dna-align/BSNT_02320___ykvW.1.5803.seq
#    -bsequence dna-align/BL03560___zosA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02320___ykvW-BL03560___zosA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02320___ykvW-BL03560___zosA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02320___ykvW
# 2: BL03560___zosA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1989
# Identity:    1365/1989 (68.6%)
# Similarity:  1365/1989 (68.6%)
# Gaps:         156/1989 ( 7.8%)
# Score: 4316.5
# 
#
#=======================================

BSNT_02320___      1 ATGAATGAACAAGTTATCGTTCAACGCGACCCGCACGAGCCATTG----A     46
                         |||  ||| |||         |.||.|.|.|  |||.||.|    |
BL03560___zos      1 ----ATG--CAA-TTA---------GAGATCGGGA--AGCAATCGCAGCA     32

BSNT_02320___     47 AAACAG--ACAAGAGGGAA---AAAAACTGGGCACAGCACGCGGAGCTTA     91
                     ||||.|  |||.|..|.||   .||||.|||...|||||||.|||..|.|
BL03560___zos     33 AAACCGTCACACGTTGCAATTTGAAAATTGGAGGCAGCACGGGGAATTGA     82

BSNT_02320___     92 TTGCTGCACTTGTATCAGGCGCTCTT-----ATTTTGGCAGGCTGGCTCT    136
                     |.|||||.|||.|.||.||     ||     |||.|.|||||||||||.|
BL03560___zos     83 TAGCTGCGCTTTTGTCGGG-----TTTGTTGATTCTTGCAGGCTGGCTGT    127

BSNT_02320___    137 TATCCGGATATCAGGTATTATCCATAATACT-TTTCTT---GCTGGCTTT    182
                     |.|||||..||.|...|||.|||.|..|.|| |||.||   |||   |||
BL03560___zos    128 TGTCCGGCAATGAAACATTGTCCGTTGTTCTGTTTATTTTAGCT---TTT    174

BSNT_02320___    183 TGTGATCGGCGGATTTGCTAAAGCAAAGGAAGGAATCGAAGAAACACT--    230
                     ||| ||||||||.|||||||||||.||.|||||.||..|||||||.||  
BL03560___zos    175 TGT-ATCGGCGGCTTTGCTAAAGCGAAAGAAGGTATACAAGAAACGCTGT    223

BSNT_02320___    231 -CGAATCCAAAACGCTGAATGTAGAACTTTTAATGATTTTCGCTGCCGTT    279
                      .|||   ||||||||||||||.|||||.||.||||||||.||.||.||.
BL03560___zos    224 CGGAA---AAAACGCTGAATGTTGAACTCTTGATGATTTTTGCGGCGGTC    270

BSNT_02320___    280 GGTTCCGCCTTGATCGGATACTGGGCAGAGGGTGCTATTTTAATATTTAT    329
                     ||.||.||..|||||||.||||||||.||.||.||..|.|||||.|||||
BL03560___zos    271 GGGTCTGCGCTGATCGGCTACTGGGCTGAAGGGGCCGTGTTAATTTTTAT    320

BSNT_02320___    330 TTTTTCCTTAAGCGGAGCTTTAGAAACATACACGATGAATAAAAGCAGCA    379
                     .|||||..|.||||||||..|.|||||.||.||..|.||||||||||...
BL03560___zos    321 CTTTTCTCTCAGCGGAGCGCTTGAAACGTATACATTAAATAAAAGCAAAC    370

BSNT_02320___    380 GAGATTTAACGTCTTTAATGCAGCTTGAGCCTGAAGAAGCGACATTGATG    429
                     |.|||||.||.||..|.|||.|..|.|||||.||.|||||....|||.|.
BL03560___zos    371 GCGATTTGACTTCACTGATGAAATTGGAGCCGGAGGAAGCCGTTTTGCTT    420

BSNT_02320___    430 GTCAATGGTGAAACCAAAAGAGTTCCGGTTTCAGA-CTTGCAGGCCGGTG    478
                     |..||.|..|.|||.|.||..||..|||...|.|| ||| |||||.||.|
BL03560___zos    421 GAAAAAGAAGGAACAAGAACCGTGGCGGCAGCCGATCTT-CAGGCGGGCG    469

BSNT_02320___    479 ATATGATTGTGATCAAACCTGGAGAACGCGTAGCGGCAGACGGTATCATT    528
                     |..|.|||.|..|.||.||||||||||||.|.|||||||||||....||.
BL03560___zos    470 ACCTCATTCTTGTGAAGCCTGGAGAACGCATTGCGGCAGACGGAGAAATC    519

BSNT_02320___    529 GAATCGGGCTCGACAAGTCTTGACGAGTCGGCTTTAACAGGTGAATCAAT    578
                     |||.|.||....||.|||.|.|||||.||||||.||||.||.|||||.||
BL03560___zos    520 GAAACCGGAAAAACGAGTATCGACGAATCGGCTCTAACGGGCGAATCCAT    569

BSNT_02320___    579 GCCTGTAGAAAAAAACA-GAGGCGACGCTGTATTCACAGGAACGGTGAAT    627
                     .||.|..| |||||||| ..||.|||||.||.||..|.||.|||||.|||
BL03560___zos    570 CCCAGCCG-AAAAAACACTCGGAGACGCGGTTTTTGCGGGTACGGTCAAT    618

BSNT_02320___    628 -----CGCAATGGCTCCTTGACTGTCCGTGTCACGAAAGCAAATGAAGAT    672
                          || .||.||||    ||.|||||||||||.||.||||||||||||
BL03560___zos    619 TTGAGCG-GATCGCTC----ACGGTCCGTGTCACAAAGGCAAATGAAGAT    663

BSNT_02320___    673 TCGTTATTCAGAAAAATTATCAAACTGGTTGAATCAGCGCAAAATAGTGT    722
                     |||||.||||.|||.||.||....||.|||||.||.||||||||.||.||
BL03560___zos    664 TCGTTGTTCAAAAAGATCATTCGGCTCGTTGAGTCTGCGCAAAACAGCGT    713

BSNT_02320___    723 TTCACCCGCTCAGGCTTTCATCGAACGATTTGAAAATGCTTATGTGAAAG    772
                     ||||||..|.|||||.|||||.||.||||||||||||..|||.||.||||
BL03560___zos    714 TTCACCGTCGCAGGCGTTCATTGAGCGATTTGAAAATATTTACGTTAAAG    763

BSNT_02320___    773 GTGTGCTAATTGCGGTGGCGCTCCTTTTATTCGTCCCGCACTTTGCGCTG    822
                     |.||..|..||||.||.|..||.||..|.||..|.|||||.|||..|||.
BL03560___zos    764 GGGTTTTGCTTGCTGTCGGACTGCTGCTCTTTCTGCCGCATTTTTTGCTT    813

BSNT_02320___    823 GGCTGGAGCTGGAGTGAAACCTTCTACCGCGCAATGGTGTTTATGGTTGT    872
                     ||||||||||||||.||.||.||.|||.|.||.||||||||.|||||.||
BL03560___zos    814 GGCTGGAGCTGGAGCGAGACATTTTACAGAGCGATGGTGTTCATGGTCGT    863

BSNT_02320___    873 CGCGTCACCTTGTGCGCTTGTCGCCTCTATTATGCCGGCGGCGCTGTCCC    922
                     |||.||.||.||.||.||||||||.||.||.|||||.||.||||||||.|
BL03560___zos    864 CGCTTCGCCGTGCGCCCTTGTCGCTTCAATCATGCCTGCCGCGCTGTCGC    913

BSNT_02320___    923 TGATTTCAAATGGCGCCCGCAACGGTATGCTTGTGAAAGGAAGCGTCTTT    972
                     ||||.|||||||||||..|.|||||..|||||||.|||||.|||||||||
BL03560___zos    914 TGATATCAAATGGCGCAAGAAACGGCCTGCTTGTCAAAGGCAGCGTCTTT    963

BSNT_02320___    973 CTTGAACAGCTGGGC-TCAGTGCAAATGATC---GCCTTTGATAAAACCG   1018
                     ||||||.||||.||| .||  |||||  |||   ||.||.||||||||.|
BL03560___zos    964 CTTGAAAAGCTTGGCAACA--GCAAA--ATCGTTGCATTGGATAAAACGG   1009

BSNT_02320___   1019 GCACTGTAACAAAAGGCCAGCCTGCCGTAGAG---ACGATTAGAATAGCA   1065
                     |.||..|.||.||.||..||||.|.|||.|||   |.|.||   .||||.
BL03560___zos   1010 GAACGATTACGAACGGAAAGCCCGGCGTGGAGGATATGCTT---TTAGCT   1056

BSNT_02320___   1066 GAAGGAT-TCAGTGAAGCG-GAAGTTCTT-GAGGCTGTCT-ATGCCATCG   1111
                     |.| ||| || |.|.|||| ||| |.||| ||||||| || .|||.||.|
BL03560___zos   1057 GCA-GATATC-GAGGAGCGCGAA-TGCTTGGAGGCTG-CTGCTGCGATTG   1102

BSNT_02320___   1112 AAATGCAATCAAGCCATCCGCTCGCCCAAGCCATAACGGCGTACGCTGAA   1161
                     |.|.|||.|||.||||||||||.|||.||||.||....|.|||.||.|||
BL03560___zos   1103 AGAAGCAGTCAGGCCATCCGCTTGCCAAAGCGATTGTCGAGTATGCAGAA   1152

BSNT_02320___   1162 AGCCGC----GGCGTGAATCAGTCCGGC----TACATATCTATAGAAGAA   1203
                         ||    |||    ||||..|||||    .|..|.||.||.||.||.
BL03560___zos   1153 ----GCAAAAGGC----ATCAAGCCGGCCGCGAATGTGTCGATTGAGGAG   1194

BSNT_02320___   1204 ACCTCAGGGTTTGGCGTTATGGCAGAAGTGTCG-------GGTGCGAAAT   1246
                     ||.|||||||||||||||..|||       |||       ||.|.||.||
BL03560___zos   1195 ACGTCAGGGTTTGGCGTTCAGGC-------TCGATACAATGGAGAGACAT   1237

BSNT_02320___   1247 GGAAGGTCGGTAAAGCAGGTTTTATCGGCGAGGAAATGGCAGC---ACAA   1293
                     ||..|.||||.|||||.||.|||.||||   ||||..||||||   .|||
BL03560___zos   1238 GGCTGATCGGCAAAGCCGGATTTGTCGG---GGAAGAGGCAGCCGGGCAA   1284

BSNT_02320___   1294 TTTTTGAAACAAACAGC-----ATCAGATGTCATTCAAAGC--GGTCATA   1336
                     |||      |..||.||     .||||..| |.|.|.||||  ||..|.|
BL03560___zos   1285 TTT------CTCACGGCGGCTGTTCAGGAG-CTTGCCAAGCAGGGAAAAA   1327

BSNT_02320___   1337 CAATTGTATTTGTGAAAAAGGATGATCAAATAGCAGGCTGTATCGCACTG   1386
                     |||||||.||..|||||||.|..||..||||.||.||.|||.|.|||.|.
BL03560___zos   1328 CAATTGTGTTCATGAAAAAAGGCGAAAAAATCGCGGGGTGTTTTGCATTA   1377

BSNT_02320___   1387 AAGGACCAAATCAGGCCTGAAGCAAAAGAGGTCATGGAAGAACTGAAC-C   1435
                     ||.|||||||||||.||.||||||||||.|||..|.|||||.|||||| |
BL03560___zos   1378 AAAGACCAAATCAGACCGGAAGCAAAAGCGGTGGTCGAAGAGCTGAACGC   1427

BSNT_02320___   1436 GACTTGGGATTAAAACGGCCATGCTGACAGGAGATCACGAAGACACGGCT   1485
                     | |||||..||.|.|||||.|||||||||||.||.||....||.||.|| 
BL03560___zos   1428 G-CTTGGCGTTCAGACGGCGATGCTGACAGGGGACCAGCCTGAAACCGC-   1475

BSNT_02320___   1486 CAAGCG---ATTGCCAAG-GAAGCCGGCATGACAACTGTCGTAGCAGAAT   1531
                       ||||   ||.| ||.| |||||.|||.|||.||..|||||..||||||
BL03560___zos   1476 --AGCGGCCATCG-CACGAGAAGCGGGCTTGAAAATCGTCGTTTCAGAAT   1522

BSNT_02320___   1532 GCCTGCCTGACCAAAAAGTGAATGAAATCAAACGGTTAAAAGAAGAATTC   1581
                     ||||.||||||..||||||..|.|||...|||..|.|.|||.||..||.|
BL03560___zos   1523 GCCTTCCTGACAGAAAAGTAGAGGAAGCGAAAAAGCTGAAAAAAACATAC   1572

BSNT_02320___   1582 GGAACGATTGCAATGGTGGGTGACGGAATCAATGATGCGCCGGCGCTCAA   1631
                     |||||.||.|..||||||||.|||||||||||||||||.|||||.||...
BL03560___zos   1573 GGAACAATCGTTATGGTGGGAGACGGAATCAATGATGCACCGGCCCTAGC   1622

BSNT_02320___   1632 AGCGGCGGATGTCGGCATTGCGATGGGCGGCGGAACAGATGTAGCACTTG   1681
                     .||.||.|||||.||.||.||.|||||.||.|||||||||||.|||||.|
BL03560___zos   1623 CGCCGCTGATGTGGGGATCGCAATGGGGGGAGGAACAGATGTCGCACTGG   1672

BSNT_02320___   1682 AGACCGCTGATATGGTCCTCATGAAAAACGATTTGAAAAAGCTCGTAAAC   1731
                     |.||.|||||..|.||..|.|||||||||||.||||.|...||....||.
BL03560___zos   1673 AAACGGCTGACGTCGTTTTAATGAAAAACGAATTGACAGGACTGACCAAA   1722

BSNT_02320___   1732 ATG-TGCCGCTTGTCTCGGAAAATGAACAGGATTATCAAACAAAATATCG   1780
                     ||| |.|.|| |.||.|||||||||||.|.|||.||.||||||||..||.
BL03560___zos   1723 ATGATTCGGC-TCTCCCGGAAAATGAATACGATCATTAAACAAAACGTCA   1771

BSNT_02320___   1781 TGTTTTCTCTAGCTGTAATCTGCCTGCTGATTTGTGCA--AACTTTTTGC   1828
                     |.||.||.||.|||||.|||||.||..|.|  |.||||  ||||||.|.|
BL03560___zos   1772 TTTTCTCGCTTGCTGTGATCTGTCTTTTAA--TCTGCAGCAACTTTCTTC   1819

BSNT_02320___   1829 AGGTGATGGAATTGCCATTTGGCGTGATTGGTCATGAGGGCAGCACGATT   1878
                     |..|..|.||..||||..|.||.||.||.||.|||||.|||||||||.|.
BL03560___zos   1820 AAATTCTTGATCTGCCGCTCGGTGTCATCGGGCATGAAGGCAGCACGCTG   1869

BSNT_02320___   1879 TTGGTCATACTAAACGGTTTAAGACTCCTAAAA---TAA   1914
                     .|.||.||..||||||||.|.|||||.||.|||   |||
BL03560___zos   1870 CTTGTGATTTTAAACGGTCTCAGACTGCTGAAATCCTAA   1908


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