Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02320 and BL03560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_02320___ykvW.1.5803.seq
# -bsequence dna-align/BL03560___zosA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02320___ykvW-BL03560___zosA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02320___ykvW-BL03560___zosA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02320___ykvW
# 2: BL03560___zosA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1989
# Identity: 1365/1989 (68.6%)
# Similarity: 1365/1989 (68.6%)
# Gaps: 156/1989 ( 7.8%)
# Score: 4316.5
#
#
#=======================================
BSNT_02320___ 1 ATGAATGAACAAGTTATCGTTCAACGCGACCCGCACGAGCCATTG----A 46
||| ||| ||| |.||.|.|.| |||.||.| |
BL03560___zos 1 ----ATG--CAA-TTA---------GAGATCGGGA--AGCAATCGCAGCA 32
BSNT_02320___ 47 AAACAG--ACAAGAGGGAA---AAAAACTGGGCACAGCACGCGGAGCTTA 91
||||.| |||.|..|.|| .||||.|||...|||||||.|||..|.|
BL03560___zos 33 AAACCGTCACACGTTGCAATTTGAAAATTGGAGGCAGCACGGGGAATTGA 82
BSNT_02320___ 92 TTGCTGCACTTGTATCAGGCGCTCTT-----ATTTTGGCAGGCTGGCTCT 136
|.|||||.|||.|.||.|| || |||.|.|||||||||||.|
BL03560___zos 83 TAGCTGCGCTTTTGTCGGG-----TTTGTTGATTCTTGCAGGCTGGCTGT 127
BSNT_02320___ 137 TATCCGGATATCAGGTATTATCCATAATACT-TTTCTT---GCTGGCTTT 182
|.|||||..||.|...|||.|||.|..|.|| |||.|| ||| |||
BL03560___zos 128 TGTCCGGCAATGAAACATTGTCCGTTGTTCTGTTTATTTTAGCT---TTT 174
BSNT_02320___ 183 TGTGATCGGCGGATTTGCTAAAGCAAAGGAAGGAATCGAAGAAACACT-- 230
||| ||||||||.|||||||||||.||.|||||.||..|||||||.||
BL03560___zos 175 TGT-ATCGGCGGCTTTGCTAAAGCGAAAGAAGGTATACAAGAAACGCTGT 223
BSNT_02320___ 231 -CGAATCCAAAACGCTGAATGTAGAACTTTTAATGATTTTCGCTGCCGTT 279
.||| ||||||||||||||.|||||.||.||||||||.||.||.||.
BL03560___zos 224 CGGAA---AAAACGCTGAATGTTGAACTCTTGATGATTTTTGCGGCGGTC 270
BSNT_02320___ 280 GGTTCCGCCTTGATCGGATACTGGGCAGAGGGTGCTATTTTAATATTTAT 329
||.||.||..|||||||.||||||||.||.||.||..|.|||||.|||||
BL03560___zos 271 GGGTCTGCGCTGATCGGCTACTGGGCTGAAGGGGCCGTGTTAATTTTTAT 320
BSNT_02320___ 330 TTTTTCCTTAAGCGGAGCTTTAGAAACATACACGATGAATAAAAGCAGCA 379
.|||||..|.||||||||..|.|||||.||.||..|.||||||||||...
BL03560___zos 321 CTTTTCTCTCAGCGGAGCGCTTGAAACGTATACATTAAATAAAAGCAAAC 370
BSNT_02320___ 380 GAGATTTAACGTCTTTAATGCAGCTTGAGCCTGAAGAAGCGACATTGATG 429
|.|||||.||.||..|.|||.|..|.|||||.||.|||||....|||.|.
BL03560___zos 371 GCGATTTGACTTCACTGATGAAATTGGAGCCGGAGGAAGCCGTTTTGCTT 420
BSNT_02320___ 430 GTCAATGGTGAAACCAAAAGAGTTCCGGTTTCAGA-CTTGCAGGCCGGTG 478
|..||.|..|.|||.|.||..||..|||...|.|| ||| |||||.||.|
BL03560___zos 421 GAAAAAGAAGGAACAAGAACCGTGGCGGCAGCCGATCTT-CAGGCGGGCG 469
BSNT_02320___ 479 ATATGATTGTGATCAAACCTGGAGAACGCGTAGCGGCAGACGGTATCATT 528
|..|.|||.|..|.||.||||||||||||.|.|||||||||||....||.
BL03560___zos 470 ACCTCATTCTTGTGAAGCCTGGAGAACGCATTGCGGCAGACGGAGAAATC 519
BSNT_02320___ 529 GAATCGGGCTCGACAAGTCTTGACGAGTCGGCTTTAACAGGTGAATCAAT 578
|||.|.||....||.|||.|.|||||.||||||.||||.||.|||||.||
BL03560___zos 520 GAAACCGGAAAAACGAGTATCGACGAATCGGCTCTAACGGGCGAATCCAT 569
BSNT_02320___ 579 GCCTGTAGAAAAAAACA-GAGGCGACGCTGTATTCACAGGAACGGTGAAT 627
.||.|..| |||||||| ..||.|||||.||.||..|.||.|||||.|||
BL03560___zos 570 CCCAGCCG-AAAAAACACTCGGAGACGCGGTTTTTGCGGGTACGGTCAAT 618
BSNT_02320___ 628 -----CGCAATGGCTCCTTGACTGTCCGTGTCACGAAAGCAAATGAAGAT 672
|| .||.|||| ||.|||||||||||.||.||||||||||||
BL03560___zos 619 TTGAGCG-GATCGCTC----ACGGTCCGTGTCACAAAGGCAAATGAAGAT 663
BSNT_02320___ 673 TCGTTATTCAGAAAAATTATCAAACTGGTTGAATCAGCGCAAAATAGTGT 722
|||||.||||.|||.||.||....||.|||||.||.||||||||.||.||
BL03560___zos 664 TCGTTGTTCAAAAAGATCATTCGGCTCGTTGAGTCTGCGCAAAACAGCGT 713
BSNT_02320___ 723 TTCACCCGCTCAGGCTTTCATCGAACGATTTGAAAATGCTTATGTGAAAG 772
||||||..|.|||||.|||||.||.||||||||||||..|||.||.||||
BL03560___zos 714 TTCACCGTCGCAGGCGTTCATTGAGCGATTTGAAAATATTTACGTTAAAG 763
BSNT_02320___ 773 GTGTGCTAATTGCGGTGGCGCTCCTTTTATTCGTCCCGCACTTTGCGCTG 822
|.||..|..||||.||.|..||.||..|.||..|.|||||.|||..|||.
BL03560___zos 764 GGGTTTTGCTTGCTGTCGGACTGCTGCTCTTTCTGCCGCATTTTTTGCTT 813
BSNT_02320___ 823 GGCTGGAGCTGGAGTGAAACCTTCTACCGCGCAATGGTGTTTATGGTTGT 872
||||||||||||||.||.||.||.|||.|.||.||||||||.|||||.||
BL03560___zos 814 GGCTGGAGCTGGAGCGAGACATTTTACAGAGCGATGGTGTTCATGGTCGT 863
BSNT_02320___ 873 CGCGTCACCTTGTGCGCTTGTCGCCTCTATTATGCCGGCGGCGCTGTCCC 922
|||.||.||.||.||.||||||||.||.||.|||||.||.||||||||.|
BL03560___zos 864 CGCTTCGCCGTGCGCCCTTGTCGCTTCAATCATGCCTGCCGCGCTGTCGC 913
BSNT_02320___ 923 TGATTTCAAATGGCGCCCGCAACGGTATGCTTGTGAAAGGAAGCGTCTTT 972
||||.|||||||||||..|.|||||..|||||||.|||||.|||||||||
BL03560___zos 914 TGATATCAAATGGCGCAAGAAACGGCCTGCTTGTCAAAGGCAGCGTCTTT 963
BSNT_02320___ 973 CTTGAACAGCTGGGC-TCAGTGCAAATGATC---GCCTTTGATAAAACCG 1018
||||||.||||.||| .|| ||||| ||| ||.||.||||||||.|
BL03560___zos 964 CTTGAAAAGCTTGGCAACA--GCAAA--ATCGTTGCATTGGATAAAACGG 1009
BSNT_02320___ 1019 GCACTGTAACAAAAGGCCAGCCTGCCGTAGAG---ACGATTAGAATAGCA 1065
|.||..|.||.||.||..||||.|.|||.||| |.|.|| .||||.
BL03560___zos 1010 GAACGATTACGAACGGAAAGCCCGGCGTGGAGGATATGCTT---TTAGCT 1056
BSNT_02320___ 1066 GAAGGAT-TCAGTGAAGCG-GAAGTTCTT-GAGGCTGTCT-ATGCCATCG 1111
|.| ||| || |.|.|||| ||| |.||| ||||||| || .|||.||.|
BL03560___zos 1057 GCA-GATATC-GAGGAGCGCGAA-TGCTTGGAGGCTG-CTGCTGCGATTG 1102
BSNT_02320___ 1112 AAATGCAATCAAGCCATCCGCTCGCCCAAGCCATAACGGCGTACGCTGAA 1161
|.|.|||.|||.||||||||||.|||.||||.||....|.|||.||.|||
BL03560___zos 1103 AGAAGCAGTCAGGCCATCCGCTTGCCAAAGCGATTGTCGAGTATGCAGAA 1152
BSNT_02320___ 1162 AGCCGC----GGCGTGAATCAGTCCGGC----TACATATCTATAGAAGAA 1203
|| ||| ||||..||||| .|..|.||.||.||.||.
BL03560___zos 1153 ----GCAAAAGGC----ATCAAGCCGGCCGCGAATGTGTCGATTGAGGAG 1194
BSNT_02320___ 1204 ACCTCAGGGTTTGGCGTTATGGCAGAAGTGTCG-------GGTGCGAAAT 1246
||.|||||||||||||||..||| ||| ||.|.||.||
BL03560___zos 1195 ACGTCAGGGTTTGGCGTTCAGGC-------TCGATACAATGGAGAGACAT 1237
BSNT_02320___ 1247 GGAAGGTCGGTAAAGCAGGTTTTATCGGCGAGGAAATGGCAGC---ACAA 1293
||..|.||||.|||||.||.|||.|||| ||||..|||||| .|||
BL03560___zos 1238 GGCTGATCGGCAAAGCCGGATTTGTCGG---GGAAGAGGCAGCCGGGCAA 1284
BSNT_02320___ 1294 TTTTTGAAACAAACAGC-----ATCAGATGTCATTCAAAGC--GGTCATA 1336
||| |..||.|| .||||..| |.|.|.|||| ||..|.|
BL03560___zos 1285 TTT------CTCACGGCGGCTGTTCAGGAG-CTTGCCAAGCAGGGAAAAA 1327
BSNT_02320___ 1337 CAATTGTATTTGTGAAAAAGGATGATCAAATAGCAGGCTGTATCGCACTG 1386
|||||||.||..|||||||.|..||..||||.||.||.|||.|.|||.|.
BL03560___zos 1328 CAATTGTGTTCATGAAAAAAGGCGAAAAAATCGCGGGGTGTTTTGCATTA 1377
BSNT_02320___ 1387 AAGGACCAAATCAGGCCTGAAGCAAAAGAGGTCATGGAAGAACTGAAC-C 1435
||.|||||||||||.||.||||||||||.|||..|.|||||.|||||| |
BL03560___zos 1378 AAAGACCAAATCAGACCGGAAGCAAAAGCGGTGGTCGAAGAGCTGAACGC 1427
BSNT_02320___ 1436 GACTTGGGATTAAAACGGCCATGCTGACAGGAGATCACGAAGACACGGCT 1485
| |||||..||.|.|||||.|||||||||||.||.||....||.||.||
BL03560___zos 1428 G-CTTGGCGTTCAGACGGCGATGCTGACAGGGGACCAGCCTGAAACCGC- 1475
BSNT_02320___ 1486 CAAGCG---ATTGCCAAG-GAAGCCGGCATGACAACTGTCGTAGCAGAAT 1531
|||| ||.| ||.| |||||.|||.|||.||..|||||..||||||
BL03560___zos 1476 --AGCGGCCATCG-CACGAGAAGCGGGCTTGAAAATCGTCGTTTCAGAAT 1522
BSNT_02320___ 1532 GCCTGCCTGACCAAAAAGTGAATGAAATCAAACGGTTAAAAGAAGAATTC 1581
||||.||||||..||||||..|.|||...|||..|.|.|||.||..||.|
BL03560___zos 1523 GCCTTCCTGACAGAAAAGTAGAGGAAGCGAAAAAGCTGAAAAAAACATAC 1572
BSNT_02320___ 1582 GGAACGATTGCAATGGTGGGTGACGGAATCAATGATGCGCCGGCGCTCAA 1631
|||||.||.|..||||||||.|||||||||||||||||.|||||.||...
BL03560___zos 1573 GGAACAATCGTTATGGTGGGAGACGGAATCAATGATGCACCGGCCCTAGC 1622
BSNT_02320___ 1632 AGCGGCGGATGTCGGCATTGCGATGGGCGGCGGAACAGATGTAGCACTTG 1681
.||.||.|||||.||.||.||.|||||.||.|||||||||||.|||||.|
BL03560___zos 1623 CGCCGCTGATGTGGGGATCGCAATGGGGGGAGGAACAGATGTCGCACTGG 1672
BSNT_02320___ 1682 AGACCGCTGATATGGTCCTCATGAAAAACGATTTGAAAAAGCTCGTAAAC 1731
|.||.|||||..|.||..|.|||||||||||.||||.|...||....||.
BL03560___zos 1673 AAACGGCTGACGTCGTTTTAATGAAAAACGAATTGACAGGACTGACCAAA 1722
BSNT_02320___ 1732 ATG-TGCCGCTTGTCTCGGAAAATGAACAGGATTATCAAACAAAATATCG 1780
||| |.|.|| |.||.|||||||||||.|.|||.||.||||||||..||.
BL03560___zos 1723 ATGATTCGGC-TCTCCCGGAAAATGAATACGATCATTAAACAAAACGTCA 1771
BSNT_02320___ 1781 TGTTTTCTCTAGCTGTAATCTGCCTGCTGATTTGTGCA--AACTTTTTGC 1828
|.||.||.||.|||||.|||||.||..|.| |.|||| ||||||.|.|
BL03560___zos 1772 TTTTCTCGCTTGCTGTGATCTGTCTTTTAA--TCTGCAGCAACTTTCTTC 1819
BSNT_02320___ 1829 AGGTGATGGAATTGCCATTTGGCGTGATTGGTCATGAGGGCAGCACGATT 1878
|..|..|.||..||||..|.||.||.||.||.|||||.|||||||||.|.
BL03560___zos 1820 AAATTCTTGATCTGCCGCTCGGTGTCATCGGGCATGAAGGCAGCACGCTG 1869
BSNT_02320___ 1879 TTGGTCATACTAAACGGTTTAAGACTCCTAAAA---TAA 1914
.|.||.||..||||||||.|.|||||.||.||| |||
BL03560___zos 1870 CTTGTGATTTTAAACGGTCTCAGACTGCTGAAATCCTAA 1908
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