Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02314 and BL03556
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_02314___ykvT.1.5803.seq
# -bsequence dna-align/BL03556___ykvT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02314___ykvT-BL03556___ykvT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02314___ykvT-BL03556___ykvT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02314___ykvT
# 2: BL03556___ykvT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 679
# Identity: 424/679 (62.4%)
# Similarity: 424/679 (62.4%)
# Gaps: 119/679 (17.5%)
# Score: 1127.0
#
#
#=======================================
BSNT_02314___ 1 ATGACAACGAAATTCACTGCTCTGGCT--GTTTTTCTTCTTTGTTTCATG 48
||||.|.|||||||..|||||||.||| ||||||..|| ||..|..||
BL03556___ykv 1 ATGAAATCGAAATTTGCTGCTCTAGCTGCGTTTTTAATC--TGCATGCTG 48
BSNT_02314___ 49 CCTGCAGCCAAAATTGAGCATACACAAGCT-TCACTACTGAGCGC-AAAG 96
||.||.||.|.|||.||||||.|.|||||| ||| |..||..|.| |||.
BL03556___ykv 49 CCGGCGGCAAGAATCGAGCATGCTCAAGCTGTCA-TGTTGTTCTCGAAAA 97
BSNT_02314___ 97 AAGACAAAACATGAA---GAA--GC-----GAAATGGCTTACACATATAG 136
|||| .|||||.||| ||| || |||| |.||||.||| ||
BL03556___ykv 98 AAGA-TAAACAGGAAATGGAACGGCTGATGGAAA-GCCTTAAACA---AG 142
BSNT_02314___ 137 ATCGAAATACGAATGAATCTTTCCCTTCACTGTCTGCTGATAAGGACAAG 186
|...||||.| || .|.|||||| .|.||.|.|.|| ||
BL03556___ykv 143 AAGAAAATCC---TG-CTTTTTCCC--AATTGACAGATG---------AG 177
BSNT_02314___ 187 AAAATAACACCGATT-----AAG--------CTATCAGCACACACTGAAA 223
|||| |.|| ||| ||.|||| |||||.
BL03556___ykv 178 AAAA-------GCTTCATTGAAGCCGCGCATCTGTCAG------CTGAAG 214
BSNT_02314___ 224 AGAAAGAGAAAGATAAACCGGACAAAACAAATGATGAGAAAGAAAC---- 269
||.|.|||.|| |||.| |.|.|.|||..||||.||
BL03556___ykv 215 AGGAGGAGGAA-ATAGA-----------AGAAGCTGAAGAAGAGACGACT 252
BSNT_02314___ 270 -AT-ATACACAGTCTGAAAAAGAGTTGCTGTCCCGTCTCGTTCACGCAGA 317
|| .||||||....||||||||..|..|.||..|.||.||.|||||.||
BL03556___ykv 253 GATCTTACACATAAAGAAAAAGATCTTTTATCAAGGCTTGTACACGCCGA 302
BSNT_02314___ 318 GGCCAAAGGAGAATCATATAAAGGCAAGGTCGCTGTAGCAAGCGTTGTAC 367
.||.|||||.||.||||.|.||||.||.||.|||||.||.|..||.||.|
BL03556___ykv 303 AGCGAAAGGCGAGTCATTTGAAGGAAAAGTGGCTGTCGCCAATGTCGTCC 352
BSNT_02314___ 368 TGAACAGGACGGAGAAA-AAAG--GTTTTCCTGATA-CGATAAGAGGAGT 413
||||..| ||.|||| |.|| |.||||||||.| || |||.|.|.||
BL03556___ykv 353 TGAATCG---GGTGAAAGACAGCCGATTTCCTGACAGCG-TAAAAAGCGT 398
BSNT_02314___ 414 TATTTATCAGAAAAACGCCTTTGAACCGGTCGCAAACGGGAGCAT---TA 460
.||.|||||.|.||||||.|||||.||.||...||||||.||||| .|
BL03556___ykv 399 GATCTATCAAAGAAACGCTTTTGAGCCCGTTCTAAACGGCAGCATCGAGA 448
BSNT_02314___ 461 ACCAAAAGCCTGATAAA----GAATCGATTGAAGCTGCCGAAGAAGCGCT 506
| |||||| |.| |||||..|.|||||||..|||||||||
BL03556___ykv 449 A--AAAAGC-----AGACCGCGAATCAGTGGAAGCTGTGGAAGAAGCG-- 489
BSNT_02314___ 507 GT-CCTCAAAA-AATAGAGAAACAGATGCCATATTCTTTTATAAT-CCGA 553
|| ..|||||| ||.|.|||||||||.||..||||.||.|||||| ||||
BL03556___ykv 490 GTAGATCAAAATAAAAAAGAAACAGAAGCTTTATTTTTCTATAATCCCGA 539
BSNT_02314___ 554 AAACAGCGTCAGATAATTGGATT----CGTTCAAGAAAAATCGTAGAA-A 598
.|.| ||.||.|||.|.|||||| || ||||||.|||| ||| .
BL03556___ykv 540 CATC-GCTTCTGATGACTGGATTAAAACG----AGAAAAGTCGT-GAAGC 583
BSNT_02314___ 599 AAATCGGCAGACACGTTTTTGCCGTCTAA 627
..|||||||..||.||.|||||..||||.
BL03556___ykv 584 GCATCGGCAATCATGTCTTTGCGATCTAG 612
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