Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02312 and BL03555
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_02312.1.5803.seq
# -bsequence dna-align/BL03555.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02312-BL03555.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02312-BL03555.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02312
# 2: BL03555
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 213
# Identity: 138/213 (64.8%)
# Similarity: 138/213 (64.8%)
# Gaps: 33/213 (15.5%)
# Score: 459.5
#
#
#=======================================
BSNT_02312 1 TTGTTGCGACCCGAAGAAATAACAG----AAATG--ATTGAACAGCT-GC 43
||| |||| ||||| ||.||.|||.| |.
BL03555 1 ---TTG---------------ACAGAGCAAAATGCCATCGATCAGATCGA 32
BSNT_02312 44 GCA--------CCGGCGCCATAAACGAACTGAGAGTCCAGAAAGAGCATT 85
||| |.||...|||..|.||.||..|.||..|.||||||.|||
BL03555 33 GCAATTAAGGTCAGGGAGCATTCATGAGCTCCGTGTGAAAAAAGAGGATT 82
BSNT_02312 86 TTCTTGATTTCAGGGCCGTGTTATCTAAACAAGATGATTTTAAACATTTC 135
|||||..||||||.|||.|.|||.|.||.||.||.||||||||.|||||.
BL03555 83 TTCTTTCTTTCAGAGCCATCTTAACAAAGCAGGAAGATTTTAAGCATTTT 132
BSNT_02312 136 CGAGGAATTGCCCAGCAAGGCGGAGATGTTATTTTTCAATACTTAGAACA 185
||.||.|||||||||||.|||||||||.||||.||||||||..|..||.|
BL03555 133 CGCGGCATTGCCCAGCATGGCGGAGATATTATATTTCAATATATGAAAGA 182
BSNT_02312 186 GCCAAGAAGCTGA 198
|.|||||||||||
BL03555 183 GGCAAGAAGCTGA 195
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