Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02308 and BL03548

See Amino acid alignment / Visit BSNT_02308 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence dna-align/BSNT_02308___ykvL.1.5803.seq
#    -bsequence dna-align/BL03548___queE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02308___ykvL-BL03548___queE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02308___ykvL-BL03548___queE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02308___ykvL
# 2: BL03548___queE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 762
# Identity:     535/762 (70.2%)
# Similarity:   535/762 (70.2%)
# Gaps:          60/762 ( 7.9%)
# Score: 1825.0
# 
#
#=======================================

BSNT_02308___      1 ATGGCTAAAGGAATTCCTGTATTAGAAATTTTCGGCCCGACAATTCAAGG     50
                     ||||||||....|||||.|||.|.|||||||||||.|||||..||||.||
BL03548___que      1 ATGGCTAAGCCGATTCCCGTACTTGAAATTTTCGGTCCGACGGTTCAGGG     50

BSNT_02308___     51 AGAAGGCATGGTGATCGGACAGAAAACGATGTTCGTCCGGACAGCCGGCT    100
                     |||.||.|||||.|||||.||.||.||||||||.|||.|.||||||||||
BL03548___que     51 AGAGGGGATGGTCATCGGCCAAAAGACGATGTTTGTCAGAACAGCCGGCT    100

BSNT_02308___    101 GTGATTATTCCTGCAGCTGGTGTGACTCCGCCTTCACTTGGGACGGGTCT    150
                     ||||.|||||.|||||||||||.||.||.||.||.||.||||||||.||.
BL03548___que    101 GTGACTATTCGTGCAGCTGGTGCGATTCAGCTTTTACCTGGGACGGTTCG    150

BSNT_02308___    151 GCTAAAAAAGATATTCGCTGGATGACGGCGGAGGAGATTTTTGCGGA--G    198
                     ||.||||||||.||....||||||||.|||||  |||..|.|.||.|  .
BL03548___que    151 GCGAAAAAAGACATCAAATGGATGACCGCGGA--AGAAGTGTACGAATCT    198

BSNT_02308___    199 CTTAAGGACATTGGCGGAGACGCGTTTTCTCATGTGACGATCTCAGGCGG    248
                     |||||.|||||.||||||.||||.||.||.||.||.|||||.|||||.||
BL03548___que    199 CTTAAAGACATCGGCGGAAACGCATTCTCGCACGTTACGATTTCAGGAGG    248

BSNT_02308___    249 CAACCCGGCCCTGTTAAAACAGCTGGATGTTTTTATTGAACTGCTGAAGG    298
                     |||||||||.||.||||||||||||||.|...|.|||...||..|.||.|
BL03548___que    249 CAACCCGGCGCTTTTAAAACAGCTGGACGGACTGATTTCCCTTTTAAAAG    298

BSNT_02308___    299 AAAATAACATCCGTGCAGCGCTTGAAACTCAAGGGACCGTTTATCAGGAT    348
                     ||||....||.||..||||||||||.||.|||||.||..|||||||.||.
BL03548___que    299 AAAACGGTATACGGACAGCGCTTGAGACGCAAGGAACGTTTTATCAAGAC    348

BSNT_02308___    349 TGGTTTACGCTG-ATTGATGACCTGACAATTTCTCCAAAACCGCCAAGCT    397
                     |||||||| |.| ||.|||||..|.||||||||.|||||.|||||.||||
BL03548___que    349 TGGTTTAC-CGGAATCGATGATTTAACAATTTCGCCAAAGCCGCCGAGCT    397

BSNT_02308___    398 CAAAAATGGTAACGAACTTTCAAAAGCTTGACCACATT-TTAACTTCACT    446
                     |.||.|||..|||..|.|||.|.|.||||||.||.||| ||.||      
BL03548___que    398 CCAATATGAAAACCGATTTTAACAGGCTTGATCATATTGTTGAC------    441

BSNT_02308___    447 TCAAG--AGAATGATAGACAGC-------ATGCTGTCAGCTTGAAGGTTG    487
                        ||  .|||.|| |.||.||       .|||.|..||.||||||||.|
BL03548___que    442 ---AGGCTGAAGGA-ACACGGCCGGGCGGCTGCGGCAAGTTTGAAGGTCG    487

BSNT_02308___    488 TCATCTTTAATGATGAAGATCTTGAATTTGCCAAAATGGTGCACAAGCGG    537
                     ||||.||.|..|..||.||.|||.|||||||.|||...||.|||.||||.
BL03548___que    488 TCATTTTCACGGCGGACGACCTTCAATTTGCAAAACAAGTTCACCAGCGT    537

BSNT_02308___    538 TATCCGGGAATCCCGTTTTATTTACAAGTCGGAAATGATGACGTGCATAC    587
                     |||||.|..||||||||||.|.|.||.|||||||||||||||||.|||  
BL03548___que    538 TATCCCGATATCCCGTTTTTTCTTCAGGTCGGAAATGATGACGTTCAT--    585

BSNT_02308___    588 GACAGATGATCA----------GTCACTGATTACACATTTGCTTGGGAAA    627
                      |||||.||.||          |||   ||    ||...||||....|||
BL03548___que    586 -ACAGAAGACCAAGAGCGGCTCGTC---GA----ACGGCTGCTCCAAAAA    627

BSNT_02308___    628 TATGAAGCGCTTGTTGATAAGGTAGCTGTCGATGCG-------GAGCTGA    670
                     ||||||..|||.||.||      |||.||| |.|||       ||..|||
BL03548___que    628 TATGAACAGCTGGTAGA------AGCGGTC-ACGCGCGACCCTGAATTGA    670

BSNT_02308___    671 ATCTCGTAAGAGTGCTCCCGCAGCTGCACACCCTGTTATGGGGCAACAAA    720
                     |.|.|||..|.||.|||||||||||.|||||||||.|.|||||.||||||
BL03548___que    671 ACCGCGTCCGCGTTCTCCCGCAGCTCCACACCCTGATCTGGGGAAACAAA    720

BSNT_02308___    721 CGCGGAGTATAA    732
                     ||.||.||.|.|
BL03548___que    721 CGGGGTGTTTGA    732


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