Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02308 and BL03548
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_02308___ykvL.1.5803.seq
# -bsequence dna-align/BL03548___queE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02308___ykvL-BL03548___queE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02308___ykvL-BL03548___queE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02308___ykvL
# 2: BL03548___queE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 762
# Identity: 535/762 (70.2%)
# Similarity: 535/762 (70.2%)
# Gaps: 60/762 ( 7.9%)
# Score: 1825.0
#
#
#=======================================
BSNT_02308___ 1 ATGGCTAAAGGAATTCCTGTATTAGAAATTTTCGGCCCGACAATTCAAGG 50
||||||||....|||||.|||.|.|||||||||||.|||||..||||.||
BL03548___que 1 ATGGCTAAGCCGATTCCCGTACTTGAAATTTTCGGTCCGACGGTTCAGGG 50
BSNT_02308___ 51 AGAAGGCATGGTGATCGGACAGAAAACGATGTTCGTCCGGACAGCCGGCT 100
|||.||.|||||.|||||.||.||.||||||||.|||.|.||||||||||
BL03548___que 51 AGAGGGGATGGTCATCGGCCAAAAGACGATGTTTGTCAGAACAGCCGGCT 100
BSNT_02308___ 101 GTGATTATTCCTGCAGCTGGTGTGACTCCGCCTTCACTTGGGACGGGTCT 150
||||.|||||.|||||||||||.||.||.||.||.||.||||||||.||.
BL03548___que 101 GTGACTATTCGTGCAGCTGGTGCGATTCAGCTTTTACCTGGGACGGTTCG 150
BSNT_02308___ 151 GCTAAAAAAGATATTCGCTGGATGACGGCGGAGGAGATTTTTGCGGA--G 198
||.||||||||.||....||||||||.||||| |||..|.|.||.| .
BL03548___que 151 GCGAAAAAAGACATCAAATGGATGACCGCGGA--AGAAGTGTACGAATCT 198
BSNT_02308___ 199 CTTAAGGACATTGGCGGAGACGCGTTTTCTCATGTGACGATCTCAGGCGG 248
|||||.|||||.||||||.||||.||.||.||.||.|||||.|||||.||
BL03548___que 199 CTTAAAGACATCGGCGGAAACGCATTCTCGCACGTTACGATTTCAGGAGG 248
BSNT_02308___ 249 CAACCCGGCCCTGTTAAAACAGCTGGATGTTTTTATTGAACTGCTGAAGG 298
|||||||||.||.||||||||||||||.|...|.|||...||..|.||.|
BL03548___que 249 CAACCCGGCGCTTTTAAAACAGCTGGACGGACTGATTTCCCTTTTAAAAG 298
BSNT_02308___ 299 AAAATAACATCCGTGCAGCGCTTGAAACTCAAGGGACCGTTTATCAGGAT 348
||||....||.||..||||||||||.||.|||||.||..|||||||.||.
BL03548___que 299 AAAACGGTATACGGACAGCGCTTGAGACGCAAGGAACGTTTTATCAAGAC 348
BSNT_02308___ 349 TGGTTTACGCTG-ATTGATGACCTGACAATTTCTCCAAAACCGCCAAGCT 397
|||||||| |.| ||.|||||..|.||||||||.|||||.|||||.||||
BL03548___que 349 TGGTTTAC-CGGAATCGATGATTTAACAATTTCGCCAAAGCCGCCGAGCT 397
BSNT_02308___ 398 CAAAAATGGTAACGAACTTTCAAAAGCTTGACCACATT-TTAACTTCACT 446
|.||.|||..|||..|.|||.|.|.||||||.||.||| ||.||
BL03548___que 398 CCAATATGAAAACCGATTTTAACAGGCTTGATCATATTGTTGAC------ 441
BSNT_02308___ 447 TCAAG--AGAATGATAGACAGC-------ATGCTGTCAGCTTGAAGGTTG 487
|| .|||.|| |.||.|| .|||.|..||.||||||||.|
BL03548___que 442 ---AGGCTGAAGGA-ACACGGCCGGGCGGCTGCGGCAAGTTTGAAGGTCG 487
BSNT_02308___ 488 TCATCTTTAATGATGAAGATCTTGAATTTGCCAAAATGGTGCACAAGCGG 537
||||.||.|..|..||.||.|||.|||||||.|||...||.|||.||||.
BL03548___que 488 TCATTTTCACGGCGGACGACCTTCAATTTGCAAAACAAGTTCACCAGCGT 537
BSNT_02308___ 538 TATCCGGGAATCCCGTTTTATTTACAAGTCGGAAATGATGACGTGCATAC 587
|||||.|..||||||||||.|.|.||.|||||||||||||||||.|||
BL03548___que 538 TATCCCGATATCCCGTTTTTTCTTCAGGTCGGAAATGATGACGTTCAT-- 585
BSNT_02308___ 588 GACAGATGATCA----------GTCACTGATTACACATTTGCTTGGGAAA 627
|||||.||.|| ||| || ||...||||....|||
BL03548___que 586 -ACAGAAGACCAAGAGCGGCTCGTC---GA----ACGGCTGCTCCAAAAA 627
BSNT_02308___ 628 TATGAAGCGCTTGTTGATAAGGTAGCTGTCGATGCG-------GAGCTGA 670
||||||..|||.||.|| |||.||| |.||| ||..|||
BL03548___que 628 TATGAACAGCTGGTAGA------AGCGGTC-ACGCGCGACCCTGAATTGA 670
BSNT_02308___ 671 ATCTCGTAAGAGTGCTCCCGCAGCTGCACACCCTGTTATGGGGCAACAAA 720
|.|.|||..|.||.|||||||||||.|||||||||.|.|||||.||||||
BL03548___que 671 ACCGCGTCCGCGTTCTCCCGCAGCTCCACACCCTGATCTGGGGAAACAAA 720
BSNT_02308___ 721 CGCGGAGTATAA 732
||.||.||.|.|
BL03548___que 721 CGGGGTGTTTGA 732
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