Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02289 and BL03541
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02289___mtnB.1.5803.seq
# -bsequence dna-align/BL03541___mtnB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02289___mtnB-BL03541___mtnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02289___mtnB-BL03541___mtnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02289___mtnB
# 2: BL03541___mtnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity: 462/1305 (35.4%)
# Similarity: 462/1305 (35.4%)
# Gaps: 696/1305 (53.3%)
# Score: 1564.5
#
#
#=======================================
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 1 ATGAGAAAGCCGCTTATCATTTGCGATTTTGACGGAACGATCACAACAAA 50
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 51 CGACAACATCATCAGCATTATGAAACAATTTGCTCCAGAAGAATGGACCG 100
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 101 CTCTAAAAGACGGGGTTCTGTCCAAGGACATATCGATTCGGGACGGAGTC 150
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 151 GGCAGAATGTTTAATTTGCTTCCGGCCAGCCTGAAAGAAGACATTACGGC 200
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 201 ATATGTACTGAAACAAGCCGAGACCCGCCCCGGATTTAAAGAATTTGTTT 250
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 251 CTTTCCTGGATGAGAAGGGTCTTCCGTTTTACGTTGTGAGCGGAGGGATG 300
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 301 GATTTTTTCGTCTATCCTCTGCTTGAAGGAATTGTCGGAAAGGACCGCAT 350
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 351 TTATTGCAACGAGGCCGCTTTCACCAGCCGCAATATCGAGATCCGCTGGC 400
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 401 CGTATCCGTGTGACGGCGGCTGCGGAAATGACTGCGGCTGCTGCAAGCCT 450
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 451 TCCATCATCCGCCGGCTGAAAGGCCGGGACGATTTCGTTGTCATGATCGG 500
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 501 GGACTCTGTTACAGATGTTGAAGCTGCCAAATGTTCCGATTTATGCATCG 550
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 551 CGCGCGACTATTTGCTGCGGGAATGTGAAGAGCTCGGCTTGAAGCATGCG 600
BSNT_02289___ 0 -------------------------------------------------- 0
BL03541___mtn 601 GCATTCGGCGATTTCCGCGATGTAAGGCGAATACTCGAAGAGACCGCGGA 650
BSNT_02289___ 1 -------------ATGGCTGCAAAACAAGAACGCTGGCGAGAGCTCGCTG 37
|||.||| |.|||.||| |||..||.||.||.|
BL03541___mtn 651 GGTGAAAGAATGGATGTCTG---AGCAAAAAC---GGCAGGAACTAGCCG 694
BSNT_02289___ 38 AAGTAAAACGGGAATTGGCAGAGAGAGATTGGTTTCCGGCGACTAGCGGT 87
|.||||||...||..|.||.||.||.||||||||.||||||||.||||||
BL03541___mtn 695 AGGTAAAAAAAGAGCTTGCGGAAAGGGATTGGTTCCCGGCGACAAGCGGT 744
BSNT_02289___ 88 AATCTGTCAATTAAGGTTACAGATGAGCCTTTAACATTTCTCGTCACTGC 137
|||||||||||.||.||..||||.||.||..|....||||||.||||.||
BL03541___mtn 745 AATCTGTCAATCAAAGTATCAGAAGACCCGCTGCGGTTTCTCATCACAGC 794
BSNT_02289___ 138 AAGCGGAAAAGATAAACGTAAAGAGACGGTTGAAGATTTTCTGCTGGTCG 187
||||||||||||||||.|.||||||||.|..||.||||||||.|||| ||
BL03541___mtn 795 AAGCGGAAAAGATAAAAGAAAAGAGACCGAGGAGGATTTTCTCCTGG-CG 843
BSNT_02289___ 188 ATCAAAACGGAGA-GCCTGCTGAAAGCGGGCATTCTCTGAAACCGTCAGC 236
..|.||..||.|| |||.||.||.|.|||.||..|.|||||.|||||.||
BL03541___mtn 844 GACGAAGAGGGGAGGCCGGCGGAGACCGGACACGCGCTGAAGCCGTCGGC 893
BSNT_02289___ 237 AGAAACGCTTTTGCATACACATTTGTACAATAAA---ACCAATGCCGGAT 283
.||.|||||..||| ||||.|.||| |.||.|| ||.||.|||||.|
BL03541___mtn 894 GGAGACGCTGCTGC--ACACCTATGT-CTATCAACACACAAACGCCGGCT 940
BSNT_02289___ 284 GCTGCCTGCATGTCCATACGGTAAACAATAATGTGATTTCAGAGTTATAC 333
||||.||.||.|||||.|||||..||||.|||||.||.||||||.|.||.
BL03541___mtn 941 GCTGTCTTCACGTCCACACGGTTGACAACAATGTCATCTCAGAGCTTTAT 990
BSNT_02289___ 334 GGAGACCAAAAGAAAA-----TGACATTCAAAGGCCAGGAAATTATAAAA 378
| |||||||||| |||||||||..|||||||||||.|||||.
BL03541___mtn 991 G-----CAAAAGAAAAGCAAGTGACATTCAGGGGCCAGGAAATCATAAAG 1035
BSNT_02289___ 379 GCACTCGG-CTTGTGGGAAGAGAACGCAGAAGTGACCGTTCCGATTATAG 427
||.||||| ||| |||||.|||.||||.||.||.||.||.||||||||.|
BL03541___mtn 1036 GCGCTCGGACTT-TGGGAGGAGCACGCGGAGGTCACGGTCCCGATTATCG 1084
BSNT_02289___ 428 AAAA-TGCGGCACATA-TCCCGACGCTAGCGGCACTGTTTGCGGAAGAGA 475
|||| .|| ||.|||| |||.|| ..|.|||||....|||||.|...|..
BL03541___mtn 1085 AAAACAGC-GCTCATATTCCTGA-TTTGGCGGCGGATTTTGCCGGGCACC 1132
BSNT_02289___ 476 TTTCAGAAGATTCAGGAGCTGTTCTGATCCGAAATCATGGTATTACGGCT 525
||||||..||||||||.||.||.|||||.||.|..||.||.|||||.|..
BL03541___mtn 1133 TTTCAGGCGATTCAGGCGCAGTGCTGATTCGCAGCCACGGCATTACTGTC 1182
BSNT_02289___ 526 TGGGGGAAAACAGCATTTGAGGCAAAAAGAGTGCTTGAAGCGTATGAATT 575
|||||.|||||.||||||||||||||..|..||||||||||.||||||||
BL03541___mtn 1183 TGGGGAAAAACGGCATTTGAGGCAAAGCGGATGCTTGAAGCATATGAATT 1232
BSNT_02289___ 576 TTTGTTCAGCTACCATTTGAAATTGAAAACACTCCAGCATCAGCTGGTTA 625
.||||||||||..|||||.||..|||||.|..|.|||..|.|.|..|||.
BL03541___mtn 1233 CTTGTTCAGCTGGCATTTAAAGCTGAAAGCTTTGCAGGCTTATCACGTTT 1282
BSNT_02289___ 626 AATAA 630
||
BL03541___mtn 1283 AA--- 1284
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