Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02287 and BL03540

See Amino acid alignment / Visit BSNT_02287 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence dna-align/BSNT_02287___mtnW.1.5803.seq
#    -bsequence dna-align/BL03540___mtnW.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02287___mtnW-BL03540___mtnW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02287___mtnW-BL03540___mtnW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02287___mtnW
# 2: BL03540___mtnW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1270
# Identity:     885/1270 (69.7%)
# Similarity:   885/1270 (69.7%)
# Gaps:          77/1270 ( 6.1%)
# Score: 2959.0
# 
#
#=======================================

BSNT_02287___      1 ATGGATGAAAATGAAAGGAGCTCTGGCATGAGTGAGTTATTAGCGACATA     50
                                                ||||||||..|.||.||.|||||
BL03540___mtn      1 ---------------------------ATGAGTGAACTTTTGGCAACATA     23

BSNT_02287___     51 TCTCCTGACCGAACCGGGAGCCGATACAGAGAAGAAAGCAGAACAAATCG    100
                     |.||.||.||||.||.||....||..||||.|||...||.||.|||||||
BL03540___mtn     24 TATCTTGGCCGATCCAGGCTGTGACGCAGAAAAGCGGGCCGAGCAAATCG     73

BSNT_02287___    101 CAACAGGATTGACAGTAGGCTCCTGGACTGATCTGCCCCTTGTAAAACAG    150
                     |.|..||..||||.||.||.||.|||||.||||||||.||..||||.|||
BL03540___mtn     74 CGATCGGGCTGACGGTCGGATCGTGGACAGATCTGCCGCTCTTAAAGCAG    123

BSNT_02287___    151 GAGCAAATGCAAAAGCACAAGGGGCGGGTGATAAAAGTTGAGG--AGAGA    198
                     |||||..||.|||||||.||.||.||.||..|.||.||.||.|  |.|||
BL03540___mtn    124 GAGCAGCTGAAAAAGCATAAAGGACGCGTCGTCAACGTCGAAGAAACAGA    173

BSNT_02287___    199 GAGGGAACTGCTGCATCAGAAAAACA---AGCGGTCATCACAATTGCCTA    245
                     .||.||.|||..|     ||||||||   |.|||   ||||.||.|||||
BL03540___mtn    174 AAGCGAGCTGGGG-----GAAAAACAGGCAACGG---TCACCATCGCCTA    215

BSNT_02287___    246 TCCTGAAATCAATTTCTCTCAGGATATTCCGGCTTTGCTGACAACAGTGT    295
                     |||.|||..||||||..|..|.||.|||||.|||.|||||||.||.||.|
BL03540___mtn    216 TCCGGAAGCCAATTTTACAAACGACATTCCCGCTGTGCTGACGACCGTTT    265

BSNT_02287___    296 TTGGCAAGCTGTCCCTGGACGGAAAAATCAAATTAATCGATCTTCACTTC    345
                     ||||.||||||||.||.|||||||||||||||||....|||.|..|.||.
BL03540___mtn    266 TTGGAAAGCTGTCTCTCGACGGAAAAATCAAATTGGCGGATTTGGAGTTT    315

BSNT_02287___    346 TCTGAAGT-ATTTAAGCGTGCACTGCCGGGACCGAAGTTTGGCGTATACG    394
                     || |..|| .|||||||...|..|||||||.||.||.||.||||||||||
BL03540___mtn    316 TC-GCGGTCTTTTAAGCAATCTTTGCCGGGTCCAAAATTCGGCGTATACG    364

BSNT_02287___    395 GCATCCGGAAGCTGCTGGGAGAGTTTGAGAGACCGCTGTTAATGAGCATA    444
                     |.||||||||.....|.||.||.|||||.||.||||||||.||||||||.
BL03540___mtn    365 GGATCCGGAAAAAAATCGGCGAATTTGAAAGGCCGCTGTTGATGAGCATT    414

BSNT_02287___    445 TTTAAAGGCGTAATCGGAAGGGACCTGAGTGATATTAAAGAACAGCTCCG    494
                     |||||||||||.|||||..|.||..||...||..|.||.||||||||..|
BL03540___mtn    415 TTTAAAGGCGTCATCGGCCGCGATATGGAAGACTTGAAGGAACAGCTGAG    464

BSNT_02287___    495 GCAGCAGGCGCTTGGCGGAGTTGACTTGATTAAAGACGATGAAATTTTCT    544
                     |||||||||.|||||||||||.||.|||||.||.|||||||||||..|.|
BL03540___mtn    465 GCAGCAGGCTCTTGGCGGAGTGGATTTGATCAAGGACGATGAAATCCTAT    514

BSNT_02287___    545 TTGAGACTGGTCTAGCGCCTTTTGAAACAAGAATTGCAGAAGGAAAGCAA    594
                     |.||.||.||....||.||.|||||||.|.||||..|.||||||||..||
BL03540___mtn    515 TCGAAACAGGCAGTGCCCCCTTTGAAAAACGAATCACGGAAGGAAAAAAA    564

BSNT_02287___    595 AT-ATTGAAAGAAACGTATGAACAAACCGGACATAAAACGCTGTATGCGG    643
                     .| .||| |.|||.|.|.||||.||||.||.|..||||||||||||||.|
BL03540___mtn    565 GTGCTTG-AGGAAGCCTTTGAAGAAACAGGGCGCAAAACGCTGTATGCCG    613

BSNT_02287___    644 TGAATTTGACCGGACGTACGGCTGATCTGAAAGACAAAGCGAGACGCGCC    693
                     |.||..||||.||..|.||....||.|||||||..|||||||||...||.
BL03540___mtn    614 TCAACCTGACGGGCAGGACAATGGAGCTGAAAGCGAAAGCGAGAAAAGCA    663

BSNT_02287___    694 GCCGAGTTGGGAGCGGATGCGCTTT---TGTTTAATGTCTTCGCTTACGG    740
                     ||||||.|.|||||.||||   |||   ||.|||||||.||.||.|||||
BL03540___mtn    664 GCCGAGCTCGGAGCTGATG---TTTTGCTGCTTAATGTGTTTGCCTACGG    710

BSNT_02287___    741 CTTGGACGTTATGCAAGGCCTTGCGGAAGATCCTGAAATCCCAGTTCCGA    790
                     ..|.||.|||.|||||.||.||||.|||||...|||.|||||..|.||||
BL03540___mtn    711 GCTCGATGTTTTGCAAAGCTTTGCAGAAGACGATGACATCCCGCTGCCGA    760

BSNT_02287___    791 TTATGGCGCATCCAGCAGTGAGCGGAGCGTTTACGTCTTCTCCGTTTTAC    840
                     ||||||||||.||.|||||.|||||.||..||||.||.||.|||..||||
BL03540___mtn    761 TTATGGCGCACCCGGCAGTAAGCGGCGCACTTACTTCATCGCCGCATTAC    810

BSNT_02287___    841 GGTTTTTCTCA--CGCTCTTTTACTCGGAAAATTAAACCGATATTGC-GG    887
                     ||||||||.||  |||||  ||.|||||.|||.|.|||||.|| ||| ||
BL03540___mtn    811 GGTTTTTCCCATTCGCTC--TTGCTCGGCAAACTGAACCGGTA-TGCGGG    857

BSNT_02287___    888 TGCTGACTTCAGCCTCTTTCCGTCTCCATATGGTTCGGTTGCGCTTCCAA    937
                     |||.||.||||||||.||.||.|||||.||.||....||.||.||.||.|
BL03540___mtn    858 TGCCGATTTCAGCCTGTTCCCTTCTCCGTACGGAAGCGTCGCTCTGCCGA    907

BSNT_02287___    938 GAGC-AGATGCACTGGCGATTCATGAAGAATGTGTGAGAGAGGATG-CTT    985
                      ||| ||||||.||.||.||..|.||.|||||...||..||.||.| |||
BL03540___mtn    908 -AGCGAGATGCGCTTGCCATATACGATGAATGCACGAAGGAAGACGTCTT    956

BSNT_02287___    986 TTAACCAAACATTTGCTGTTCCGTCAGCAGGCATTCATCCCGGCATGGTT   1035
                     |.|||| .|||||.||.||.|||||.||.||||||||.|||||||||||.
BL03540___mtn    957 TAAACC-GACATTCGCGGTGCCGTCGGCCGGCATTCACCCCGGCATGGTC   1005

BSNT_02287___   1036 CCGCTATTAATGCGTGATTTCGGCATAGACCACATTATTAACGCCGGAGG   1085
                     |||||.||.|||...||.||.|||||.||||||||.||.||.||.||.||
BL03540___mtn   1006 CCGCTCTTGATGAAAGACTTTGGCATTGACCACATCATCAATGCAGGCGG   1055

BSNT_02287___   1086 AGGCGTACATGGACATCCGAACGGTGCCCAAGGCGGGGGGCGAGCGTTCA   1135
                     .||..|.||.||.|||||.|||||.||...||||||.||..|||||||..
BL03540___mtn   1056 GGGGATTCACGGCCATCCAAACGGGGCGGCAGGCGGAGGAAGAGCGTTTC   1105

BSNT_02287___   1136 GAGCCATTATTGATGCGGTCCTAGAGGCCCAGCCGATTGATGAAAAAGCC   1185
                     |.||..|.||||||||.|||.||||.||..||||..|.||.||.||||  
BL03540___mtn   1106 GGGCGGTCATTGATGCCGTCTTAGAAGCGGAGCCTGTCGAAGAGAAAG--   1153

BSNT_02287___   1186 GAACAATGCAAG-------GATCTTAAGCTTGCGCTAGATAAATGGGGAA   1228
                        |||.||  |       |||.|.|||||.||.||.||.||||||||||
BL03540___mtn   1154 ---CAAAGC--GCTCTCCCGATTTGAAGCTCGCCCTTGAAAAATGGGGAA   1198

BSNT_02287___   1229 AGGTTGAAG---CCGTATGA   1245
                     .||||||.|   |.||||||
BL03540___mtn   1199 GGGTTGAGGTCTCTGTATGA   1218


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