Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02287 and BL03540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02287___mtnW.1.5803.seq
# -bsequence dna-align/BL03540___mtnW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02287___mtnW-BL03540___mtnW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02287___mtnW-BL03540___mtnW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02287___mtnW
# 2: BL03540___mtnW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1270
# Identity: 885/1270 (69.7%)
# Similarity: 885/1270 (69.7%)
# Gaps: 77/1270 ( 6.1%)
# Score: 2959.0
#
#
#=======================================
BSNT_02287___ 1 ATGGATGAAAATGAAAGGAGCTCTGGCATGAGTGAGTTATTAGCGACATA 50
||||||||..|.||.||.|||||
BL03540___mtn 1 ---------------------------ATGAGTGAACTTTTGGCAACATA 23
BSNT_02287___ 51 TCTCCTGACCGAACCGGGAGCCGATACAGAGAAGAAAGCAGAACAAATCG 100
|.||.||.||||.||.||....||..||||.|||...||.||.|||||||
BL03540___mtn 24 TATCTTGGCCGATCCAGGCTGTGACGCAGAAAAGCGGGCCGAGCAAATCG 73
BSNT_02287___ 101 CAACAGGATTGACAGTAGGCTCCTGGACTGATCTGCCCCTTGTAAAACAG 150
|.|..||..||||.||.||.||.|||||.||||||||.||..||||.|||
BL03540___mtn 74 CGATCGGGCTGACGGTCGGATCGTGGACAGATCTGCCGCTCTTAAAGCAG 123
BSNT_02287___ 151 GAGCAAATGCAAAAGCACAAGGGGCGGGTGATAAAAGTTGAGG--AGAGA 198
|||||..||.|||||||.||.||.||.||..|.||.||.||.| |.|||
BL03540___mtn 124 GAGCAGCTGAAAAAGCATAAAGGACGCGTCGTCAACGTCGAAGAAACAGA 173
BSNT_02287___ 199 GAGGGAACTGCTGCATCAGAAAAACA---AGCGGTCATCACAATTGCCTA 245
.||.||.|||..| |||||||| |.||| ||||.||.|||||
BL03540___mtn 174 AAGCGAGCTGGGG-----GAAAAACAGGCAACGG---TCACCATCGCCTA 215
BSNT_02287___ 246 TCCTGAAATCAATTTCTCTCAGGATATTCCGGCTTTGCTGACAACAGTGT 295
|||.|||..||||||..|..|.||.|||||.|||.|||||||.||.||.|
BL03540___mtn 216 TCCGGAAGCCAATTTTACAAACGACATTCCCGCTGTGCTGACGACCGTTT 265
BSNT_02287___ 296 TTGGCAAGCTGTCCCTGGACGGAAAAATCAAATTAATCGATCTTCACTTC 345
||||.||||||||.||.|||||||||||||||||....|||.|..|.||.
BL03540___mtn 266 TTGGAAAGCTGTCTCTCGACGGAAAAATCAAATTGGCGGATTTGGAGTTT 315
BSNT_02287___ 346 TCTGAAGT-ATTTAAGCGTGCACTGCCGGGACCGAAGTTTGGCGTATACG 394
|| |..|| .|||||||...|..|||||||.||.||.||.||||||||||
BL03540___mtn 316 TC-GCGGTCTTTTAAGCAATCTTTGCCGGGTCCAAAATTCGGCGTATACG 364
BSNT_02287___ 395 GCATCCGGAAGCTGCTGGGAGAGTTTGAGAGACCGCTGTTAATGAGCATA 444
|.||||||||.....|.||.||.|||||.||.||||||||.||||||||.
BL03540___mtn 365 GGATCCGGAAAAAAATCGGCGAATTTGAAAGGCCGCTGTTGATGAGCATT 414
BSNT_02287___ 445 TTTAAAGGCGTAATCGGAAGGGACCTGAGTGATATTAAAGAACAGCTCCG 494
|||||||||||.|||||..|.||..||...||..|.||.||||||||..|
BL03540___mtn 415 TTTAAAGGCGTCATCGGCCGCGATATGGAAGACTTGAAGGAACAGCTGAG 464
BSNT_02287___ 495 GCAGCAGGCGCTTGGCGGAGTTGACTTGATTAAAGACGATGAAATTTTCT 544
|||||||||.|||||||||||.||.|||||.||.|||||||||||..|.|
BL03540___mtn 465 GCAGCAGGCTCTTGGCGGAGTGGATTTGATCAAGGACGATGAAATCCTAT 514
BSNT_02287___ 545 TTGAGACTGGTCTAGCGCCTTTTGAAACAAGAATTGCAGAAGGAAAGCAA 594
|.||.||.||....||.||.|||||||.|.||||..|.||||||||..||
BL03540___mtn 515 TCGAAACAGGCAGTGCCCCCTTTGAAAAACGAATCACGGAAGGAAAAAAA 564
BSNT_02287___ 595 AT-ATTGAAAGAAACGTATGAACAAACCGGACATAAAACGCTGTATGCGG 643
.| .||| |.|||.|.|.||||.||||.||.|..||||||||||||||.|
BL03540___mtn 565 GTGCTTG-AGGAAGCCTTTGAAGAAACAGGGCGCAAAACGCTGTATGCCG 613
BSNT_02287___ 644 TGAATTTGACCGGACGTACGGCTGATCTGAAAGACAAAGCGAGACGCGCC 693
|.||..||||.||..|.||....||.|||||||..|||||||||...||.
BL03540___mtn 614 TCAACCTGACGGGCAGGACAATGGAGCTGAAAGCGAAAGCGAGAAAAGCA 663
BSNT_02287___ 694 GCCGAGTTGGGAGCGGATGCGCTTT---TGTTTAATGTCTTCGCTTACGG 740
||||||.|.|||||.|||| ||| ||.|||||||.||.||.|||||
BL03540___mtn 664 GCCGAGCTCGGAGCTGATG---TTTTGCTGCTTAATGTGTTTGCCTACGG 710
BSNT_02287___ 741 CTTGGACGTTATGCAAGGCCTTGCGGAAGATCCTGAAATCCCAGTTCCGA 790
..|.||.|||.|||||.||.||||.|||||...|||.|||||..|.||||
BL03540___mtn 711 GCTCGATGTTTTGCAAAGCTTTGCAGAAGACGATGACATCCCGCTGCCGA 760
BSNT_02287___ 791 TTATGGCGCATCCAGCAGTGAGCGGAGCGTTTACGTCTTCTCCGTTTTAC 840
||||||||||.||.|||||.|||||.||..||||.||.||.|||..||||
BL03540___mtn 761 TTATGGCGCACCCGGCAGTAAGCGGCGCACTTACTTCATCGCCGCATTAC 810
BSNT_02287___ 841 GGTTTTTCTCA--CGCTCTTTTACTCGGAAAATTAAACCGATATTGC-GG 887
||||||||.|| ||||| ||.|||||.|||.|.|||||.|| ||| ||
BL03540___mtn 811 GGTTTTTCCCATTCGCTC--TTGCTCGGCAAACTGAACCGGTA-TGCGGG 857
BSNT_02287___ 888 TGCTGACTTCAGCCTCTTTCCGTCTCCATATGGTTCGGTTGCGCTTCCAA 937
|||.||.||||||||.||.||.|||||.||.||....||.||.||.||.|
BL03540___mtn 858 TGCCGATTTCAGCCTGTTCCCTTCTCCGTACGGAAGCGTCGCTCTGCCGA 907
BSNT_02287___ 938 GAGC-AGATGCACTGGCGATTCATGAAGAATGTGTGAGAGAGGATG-CTT 985
||| ||||||.||.||.||..|.||.|||||...||..||.||.| |||
BL03540___mtn 908 -AGCGAGATGCGCTTGCCATATACGATGAATGCACGAAGGAAGACGTCTT 956
BSNT_02287___ 986 TTAACCAAACATTTGCTGTTCCGTCAGCAGGCATTCATCCCGGCATGGTT 1035
|.|||| .|||||.||.||.|||||.||.||||||||.|||||||||||.
BL03540___mtn 957 TAAACC-GACATTCGCGGTGCCGTCGGCCGGCATTCACCCCGGCATGGTC 1005
BSNT_02287___ 1036 CCGCTATTAATGCGTGATTTCGGCATAGACCACATTATTAACGCCGGAGG 1085
|||||.||.|||...||.||.|||||.||||||||.||.||.||.||.||
BL03540___mtn 1006 CCGCTCTTGATGAAAGACTTTGGCATTGACCACATCATCAATGCAGGCGG 1055
BSNT_02287___ 1086 AGGCGTACATGGACATCCGAACGGTGCCCAAGGCGGGGGGCGAGCGTTCA 1135
.||..|.||.||.|||||.|||||.||...||||||.||..|||||||..
BL03540___mtn 1056 GGGGATTCACGGCCATCCAAACGGGGCGGCAGGCGGAGGAAGAGCGTTTC 1105
BSNT_02287___ 1136 GAGCCATTATTGATGCGGTCCTAGAGGCCCAGCCGATTGATGAAAAAGCC 1185
|.||..|.||||||||.|||.||||.||..||||..|.||.||.||||
BL03540___mtn 1106 GGGCGGTCATTGATGCCGTCTTAGAAGCGGAGCCTGTCGAAGAGAAAG-- 1153
BSNT_02287___ 1186 GAACAATGCAAG-------GATCTTAAGCTTGCGCTAGATAAATGGGGAA 1228
|||.|| | |||.|.|||||.||.||.||.||||||||||
BL03540___mtn 1154 ---CAAAGC--GCTCTCCCGATTTGAAGCTCGCCCTTGAAAAATGGGGAA 1198
BSNT_02287___ 1229 AGGTTGAAG---CCGTATGA 1245
.||||||.| |.||||||
BL03540___mtn 1199 GGGTTGAGGTCTCTGTATGA 1218
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