Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02286 and BL03539
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02286___ykrV.1.5803.seq
# -bsequence dna-align/BL03539___mtnV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02286___ykrV-BL03539___mtnV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02286___ykrV-BL03539___mtnV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02286___ykrV
# 2: BL03539___mtnV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1230
# Identity: 880/1230 (71.5%)
# Similarity: 880/1230 (71.5%)
# Gaps: 72/1230 ( 5.9%)
# Score: 3011.5
#
#
#=======================================
BSNT_02286___ 1 ATGAAATTTGAACAGTCTCATGTATTGAAGGAATTGCCTAAACAATTCTT 50
|||||||||||.||.||..|||||.|||||.|..||||..|.||.||.||
BL03539___mtn 1 ATGAAATTTGAGCATTCAGATGTACTGAAGCAGCTGCCGGAGCAGTTTTT 50
BSNT_02286___ 51 CGCTTCTCTGGTGCAGAAA-GTGAACCGAAAGCTCGCAGAAGGACATGAC 99
||||||..|||| ||.||| |||||...|||..|.||.|..||.|||||.
BL03539___mtn 51 CGCTTCCTTGGT-CAAAAAGGTGAATGAAAAAATTGCCGCCGGCCATGAT 99
BSNT_02286___ 100 GTTATCAATCTAGGACAGGGAAATCCAGATCAGCCGACTCCTGAACATAT 149
||.||||||||.||.|||||.|||||.|||||||||||.||.||||||||
BL03539___mtn 100 GTCATCAATCTCGGTCAGGGGAATCCGGATCAGCCGACACCGGAACATAT 149
BSNT_02286___ 150 TGTTGAGGAGATGAAACGAGCTGTTGCTG--ATCCTGAGAATCATAAATA 197
.|||||....|||...|.|||.|| |.| |.|||||.||.||....||
BL03539___mtn 150 CGTTGATACAATGGCGCAAGCCGT--CCGCAACCCTGAAAACCACCGGTA 197
BSNT_02286___ 198 TTCTTCTTTTCGCGGCTCATA-CCGT---CTGAAGTCAGCGGCTGCTGCA 243
||||||.||||||||| | |||| ||.|||...|||||.||.||.
BL03539___mtn 198 TTCTTCCTTTCGCGGC----AGCCGTTCACTCAAGGAGGCGGCGGCCGCG 243
BSNT_02286___ 244 TTTTACAAAAGAGAATACGGCATTGATCTGGATCCGGAAACCGAAGTCGC 293
||.||..||||.|||||||||.|.||.||.|||||.|||..|||||||||
BL03539___mtn 244 TTCTATCAAAGGGAATACGGCGTAGAGCTCGATCCTGAACGCGAAGTCGC 293
BSNT_02286___ 294 TGTATTATTCGGCGGAAAAGCGGGTCTAGTCGAGCTCCCGCAATGCTTGT 343
||||||.||||||||||||||.|||||.|||||.||.||||||||.||||
BL03539___mtn 294 TGTATTGTTCGGCGGAAAAGCCGGTCTTGTCGAACTTCCGCAATGTTTGT 343
BSNT_02286___ 344 TGAATCCCGGTGATACGATTTTAGTTCCCGATCCGGGTTATCCTGATTAC 393
|.|||||.||.|||||..|..|.|||||||||||.||.|||||.||.|||
BL03539___mtn 344 TAAATCCGGGGGATACAGTGCTCGTTCCCGATCCCGGCTATCCCGACTAC 393
BSNT_02286___ 394 TGGTCGGGTGTCACACTTGCAAAAGCAAAGATGGAAATGATGCCGCTCGT 443
||||||||.||...|||.||||.|||.||.|||||||.||||||||| |
BL03539___mtn 394 TGGTCGGGCGTTGAACTGGCAAGAGCGAACATGGAAACGATGCCGCT--T 441
BSNT_02286___ 444 AAA--GGACAGGGCGTTTCTCCCTGATTACAGCAGCATAACCGCTGAAGT 491
|.| |||||....||||||.|||||.||||||.|.||..||...|||||
BL03539___mtn 442 ACAGCGGACAATCAGTTTCTGCCTGACTACAGCCGGATTCCCAAGGAAGT 491
BSNT_02286___ 492 AAGGGAACAGGCGAAATTGATGTATTTGAATTATCCGAATAATCCGACTG 541
.|..|||.|.|||||..|.||||||||.|||||||||||.||.|||||.|
BL03539___mtn 492 GAAAGAAAAAGCGAAGCTCATGTATTTAAATTATCCGAACAACCCGACCG 541
BSNT_02286___ 542 GAGCTGTTGCTACTTCCGAGTTCTTTGAAGATACCGTGCGTTTTGCGGCT 591
|.||....||.||.||.|..||.||.|||||.|||||.||.|||||
BL03539___mtn 542 GTGCCCAAGCCACATCTGCTTTTTTCGAAGAGACCGTCCGGTTTGC---- 587
BSNT_02286___ 592 GAA----AACGGAATCTGCGTCGTTCACGATTTTGCTTACGGCGCTGTAG 637
.|| ||||||||.||||||||.||.||||||||.||||||||..|.|
BL03539___mtn 588 CAAGTCGAACGGAATTTGCGTCGTCCATGATTTTGCCTACGGCGCGATCG 637
BSNT_02286___ 638 GATTTGACGGCTGCAAGCCTTTAAGCTTTTTGCAGACTGAAGGTGCGAAG 687
|.|..||||||...|.||||.|.||||||.|..|.||.|..||.||.||.
BL03539___mtn 638 GCTACGACGGCAAGAGGCCTGTCAGCTTTCTCGAAACGGCGGGAGCAAAA 687
BSNT_02286___ 688 GATATCGGAATTGAAATTTACACGCTGTCAAAAACGTATAATATGGCAGG 737
||....|||||.||||||||||||||.||.|||||||||||||||||.||
BL03539___mtn 688 GACGCAGGAATCGAAATTTACACGCTTTCCAAAACGTATAATATGGCTGG 737
BSNT_02286___ 738 ATGGCGGGTTGGCTTTGCCGTCGGAAACGCTTCGGTCATTGAAGCGATCA 787
|||||||||.||.|||||.|||||.|||||.||.||.||.||||||.|.|
BL03539___mtn 738 ATGGCGGGTCGGGTTTGCAGTCGGCAACGCCTCTGTGATCGAAGCGCTGA 787
BSNT_02286___ 788 ATCTTTATCAAGACCATATGTTTGTCAGTCTTTTCAGAGCGACT-CAGGA 836
|.|||||.||.||||||||||.||||||.||.||.|.||| |.| ||.||
BL03539___mtn 788 ACCTTTACCAGGACCATATGTATGTCAGCCTCTTTAAAGC-AGTCCAAGA 836
BSNT_02286___ 837 GGCTGCAGCAGAGGCACTGTTAGCCGATCAGACGTGTGTGGCA-GAGCAA 885
.||.||.||.|..||.||..||.|.|||||..||||||| .|| ||||||
BL03539___mtn 837 CGCCGCGGCGGCCGCGCTCCTATCAGATCAAGCGTGTGT-CCAGGAGCAA 885
BSNT_02286___ 886 AATGCCAGGTATGAGAGCAGGAGAAACGCTTGGATCACG-GCATGCCGGG 934
||||...|.||.||.|..|||.|.||.||.|||||| || ||...|||.|
BL03539___mtn 886 AATGAGCGCTACGAAAAAAGGCGGAATGCATGGATC-CGCGCGGTCCGCG 934
BSNT_02286___ 935 AAATCGGCTGGGATG----TAACAGCTCCCGC-AGGTTCTTTTTTTGCAT 979
|.|||||||||.||| | ||| |||| |||.||||||||.||.|
BL03539___mtn 935 ATATCGGCTGGCATGCGGAT----GCT-CCGCAAGGATCTTTTTTCGCCT 979
BSNT_02286___ 980 GGCTGCCTGTGCCTGAAGGCTATACTTCTGAGCAGTTCTCAGATCTTTTG 1029
||.|||||||.||.||.||||||||.||||||...||.||.|||||..|.
BL03539___mtn 980 GGATGCCTGTTCCCGACGGCTATACATCTGAGGCTTTTTCCGATCTGCTT 1029
BSNT_02286___ 1030 CTGGAAAAAGCGAATGT-GGCAGTTGCGGCTGGAAACGGCTTCGGTGAAT 1078
||.|||||||||||||| |.|| ..|||.|.||.|.|||||||||..||.
BL03539___mtn 1030 CTCGAAAAAGCGAATGTCGTCA-CCGCGCCCGGCATCGGCTTCGGCAAAC 1078
BSNT_02286___ 1079 ATGGCGAGGGCTACGTCAGAGTCGGACTTTTAACAAGTGAAGAAAGACTT 1128
|.||.||.|||||.||.||||||||.||.||.|||||.|||||..|.||.
BL03539___mtn 1079 ACGGGGAAGGCTATGTGAGAGTCGGCCTCTTGACAAGCGAAGAGCGGCTC 1128
BSNT_02286___ 1129 AAGGAAGCCGCTTATCGAATTGGCAAACTGAACCTGTTTACCCAAAAA-- 1176
..||||||.||||..||.||||.|.|.||||| |.||..||||||
BL03539___mtn 1129 CGGGAAGCGGCTTCGCGTATTGCCGAGCTGAA----TATATTCAAAAAGA 1174
BSNT_02286___ 1177 --------AG-CATTGACAAGACCTTATAA 1197
|| ||||||
BL03539___mtn 1175 CCGGCCACAGTCATTGA------------- 1191
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