Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00725 and BL03534
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_00725___pbpC.1.5803.seq
# -bsequence dna-align/BL03534___pbpC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00725___pbpC-BL03534___pbpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00725___pbpC-BL03534___pbpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00725___pbpC
# 2: BL03534___pbpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2169
# Identity: 1384/2169 (63.8%)
# Similarity: 1384/2169 (63.8%)
# Gaps: 330/2169 (15.2%)
# Score: 3939.5
#
#
#=======================================
BSNT_00725___ 1 ATGTTAAAAA-AGTGTATTCTACTAGTATTTCTATGCGTCGGATT--GAT 47
||| ||||| ||.||..||.|.| |.|||.||..||.|||||| .||
BL03534___pbp 1 ATG--AAAAAGAGAGTCATCCATT--TGTTTATAGCCGCCGGATTTCTAT 46
BSNT_00725___ 48 TGGGTTAATCGGA---TGCTCCAA--AACAGATTCACCAGAGGATCGCAT 92
| |.|...|||| ||.||.|| |.|.|| ||.||.|.||..||||
BL03534___pbp 47 T--GCTCGCCGGAGCCTGTTCTAACGAGCCGA--CAGCAAAAGAAAGCAT 92
BSNT_00725___ 93 GGAAGCATTCGTGAAAC-AGTGGAACGATCAGCAATTCGATGACATGTAT 141
|||...||..|| |.|| |.||||||||.||..||||.||.||.||||||
BL03534___pbp 93 GGACCAATATGT-AGACAAATGGAACGAGCAAAAATTTGAAGAAATGTAT 141
BSNT_00725___ 142 CAA-AGCCTGACTAAAGATGTC----------AAAAAAGAAATCTCCAAA 180
.|| ||| |||| .|||||...||.||.|||
BL03534___pbp 142 GAACAGC-----------TGTCGGCTGAAGCGCAAAAATCGATTTCAAAA 180
BSNT_00725___ 181 AAAGATTTCGTCAACAGGTATAAAGCCATCTATGAGCAGGCCGGCGTAAA 230
.|.||||||.||||..|..||.||.|.||.|||||.|||...||.||...
BL03534___pbp 181 GACGATTTCATCAAGCGTAATCAATCTATTTATGAACAGATTGGAGTTTC 230
BSNT_00725___ 231 AAATTTGAAAGTCACTGCGGGAGAA--GTAGATAAGGACGATCAAGACAA 278
..|||||||.||..| || ||.||.| |||||.||||..|
BL03534___pbp 231 CGATTTGAAGGTTTC--------AACCGTCGACA---ACGATGAAGATGA 269
BSNT_00725___ 279 CAAGACGAT-----GAAACAT------------ATCCCGTATAAAGTCAG 311
.||.| || ||||.|| ||.||||||||||||||
BL03534___pbp 270 AAAAA--ATAAAGAGAAAAATGATTCGGTGACGATACCGTATAAAGTCAG 317
BSNT_00725___ 312 CATGAACACAAATGCCGGCAAAGTCAGCTT-----------CAAG---AA 347
||||||.|||...|||| |||.|.|| |||| ||
BL03534___pbp 318 CATGAAGACATTGGCCG-----GTCCGGTTTCTTTTCAAGGCAAGGCAAA 362
BSNT_00725___ 348 TACTGCTGTGCTGAAATTAGAAAAAACAGATGACGAGGAG-----TCATG 392
||| || |.|| ||||||||.||| .|||| |||||
BL03534___pbp 363 ----GCT-TG-TCAA---AGAAAAAAAAGA-----CGGAGACACTTCATG 398
BSNT_00725___ 393 GAATATAGATTGGGACCCATCGTTTA--TTTTCAAGCAGCTGGCTGACGA 440
|||..|..|.|||.|||.|||.|||| |||||| || |||||.||
BL03534___pbp 399 GAAGGTCAACTGGAACCAATCCTTTATTTTTTCA--CA----GCTGAAGA 442
BSNT_00725___ 441 CA----AAACCGTGCAAATTATGAGCATTGAACCGAAAC--GAGGCCAAA 484
.| |.|||.|.|..||||....||..||.|| ||| |||||...|
BL03534___pbp 443 AAGGGGAGACCATCCGGATTACCGCCAAGGAGCC--AACTAGAGGCATCA 490
BSNT_00725___ 485 TTTACGATAAAAATGGAAAAG-GCT---TAGCCGTCAAT---ACAGATGT 527
||||.||.|.|||.|||||.| ||| || || ||| ||| ||
BL03534___pbp 491 TTTATGACAGAAACGGAAAGGCGCTCGCTA--CG--AATGCGACA---GT 533
BSNT_00725___ 528 TCCGGAAATTGGAATTGTTCCCGGAGAGCTTGGCGATAAAAAAGAGAAAG 577
.||.|||||.||..|.|||||.||..||||.||.|||.|.|||||....|
BL03534___pbp 534 GCCTGAAATCGGCGTCGTTCCGGGGCAGCTCGGAGATGATAAAGACGGTG 583
BSNT_00725___ 578 TCATAAAAGAACTCGCCAAAAAACTTGATTTGACTGAAGACGACATCAAG 627
||||.|||.|.|||||.||.|..||||||.||....||||.||||| ||
BL03534___pbp 584 TCATCAAAAAGCTCGCGAACATGCTTGATATGGAAAAAGAAGACAT--AG 631
BSNT_00725___ 628 AAAA--AGCTGGAT---CAAGGCTGGGTAAAAGACGATTCGTTTGTGCCG 672
|||| ||||| | ||| |||||||.|..||||||||.||.||.||.
BL03534___pbp 632 AAAAACAGCTG--TCCGCAA-GCTGGGTGACGGACGATTCATTCGTTCCC 678
BSNT_00725___ 673 CTCAAAAAGGTCAAGCCTGACCAGGAGAAATTAGTTTCT----GAAGCGA 718
||.|||||.||.||||||| |.||.|...||.|||| .||||||
BL03534___pbp 679 CTGAAAAAAGTGAAGCCTG----GCAGCACCGAGCTTCTCAAAAAAGCGA 724
BSNT_00725___ 719 CGTCATTACAAGGCGT-----AACAAGA-ACGAATGTCAGCTCCCGCTAC 762
|.||..|.|..||.|| |.||.|| ||| ||| ||..|.|||
BL03534___pbp 725 CCTCTCTCCCCGGGGTTTTGAAGCAGGATACG-----CAG-TCAAGATAC 768
BSNT_00725___ 763 TATCCGTATGGCGAAAAGACAGCCCATTTGACAGGCTATGTCCGCGCC-A 811
|||||.||.||.|||||..|.||.|||.|.||.||.||..|.|| ||| |
BL03534___pbp 769 TATCCTTACGGTGAAAAAGCCGCACATCTTACCGGTTACATACG-GCCGA 817
BSNT_00725___ 812 TTACAGCGGAAGAACTGAAGAAAAAGAAAGAAGGAACGTACAGCGATACG 861
||||.|..||.|||.|.||..|.||.|||||||| .||||||||....
BL03534___pbp 818 TTACCGAAGAGGAATTAAAACAGAATAAAGAAGG---CTACAGCGAGCAT 864
BSNT_00725___ 862 TCTAAC--ATCGGTATCGCCGGACTTGAAAATGTGTATGAAGACAAGCTA 909
|| || .||||.||||.|||.||.|||.||.|.||||||.|..||||.
BL03534___pbp 865 TC--ACTGCTCGGAATCGTCGGTCTCGAACATATTTATGAAAAAGAGCTC 912
BSNT_00725___ 910 AGAGGCACAACT-GGCTGGAAAATCTACG-TGCCGCAAACCGGGGAAGTC 957
||||| |.||.| |||||||..|| |.|| |.||..||.|.||
BL03534___pbp 913 AGAGG-AGAAATCGGCTGGACGAT-TTCGATCCCTGAATCAGG------- 953
BSNT_00725___ 958 ATCGCTGA----------AAAGAAAGCAAAGGACGGCGAGGATCTTCACC 997
||| || ||||.|.|||||.|||||..|.||..|.|||.
BL03534___pbp 954 --CGC-GACGGTTGCGTCAAAGGATGCAAAAGACGGAAAAGACATCCACA 1000
BSNT_00725___ 998 TCACAATTGATATCAAAACGCAAACGAAGCTGTATGATGAACTG------ 1041
.|||.||.||.||.|| |||.| |.||.||||||
BL03534___pbp 1001 CCACGATCGACATTAA---------GAAAC---AGGAAGAACTGTACAGC 1038
BSNT_00725___ 1042 ------AAGGATGACAGCGGGGCGGCAGTCGCGCTGCAGCCGAAGACAGG 1085
||.||||||..|||.||.||.||.||..|..|.|||.||||.||
BL03534___pbp 1039 CAGTTAAAAGATGACTCCGGCGCTGCCGTTGCTTTAGAACCGCAGACTGG 1088
BSNT_00725___ 1086 CGAAACACTCGCCCTTGTCAGCGCGCCTTCCTACGATCCAAACGGATTTA 1135
.|||||.||.||.|||||||||||||||||.||.|||||.|||||.|||.
BL03534___pbp 1089 AGAAACGCTGGCGCTTGTCAGCGCGCCTTCATATGATCCGAACGGGTTTT 1138
BSNT_00725___ 1136 TTTTCGGCTGGAGCGATAAG--GAATGGAAAAAGCTAAACAAAGATAAAA 1183
|.|||||||||| .|.||| ||||||.|||||||.|||||||
BL03534___pbp 1139 TGTTCGGCTGGA--AAAAAGGAGAATGGGAAAAGCTCAACAAAG------ 1180
BSNT_00725___ 1184 ACAATCCGT-------TTTCA--GCGAAATTCAATAAGACATACGCGCCA 1224
||.||| .|||| .|.|||||.|||||.||.||.||.||.
BL03534___pbp 1181 ---ATGCGTCTGCGCCATTCACCTCTAAATTTAATAAAACTTATGCTCCG 1227
BSNT_00725___ 1225 GGTTCTACCATTAAACCGATTGCGGCTGCTATTGGAATCAAAAACGGCAC 1274
|||||.||.||.||||||||..|.|||.|.||.||..|.|||||.|...|
BL03534___pbp 1228 GGTTCAACGATCAAACCGATCACCGCTTCAATCGGTCTGAAAAATGATGC 1277
BSNT_00725___ 1275 CCTTAAAGCCGATGA---GAAGAAAACAATCAAAGGCAAGGAGTGGCAAA 1321
..|.|||||.||||| .||||| .|||.||||.|||||.|||||.|
BL03534___pbp 1278 GATCAAAGCGGATGAACCTAAGAA---GATCGAAGGGAAGGAATGGCAGA 1324
BSNT_00725___ 1322 AAGATTCGAGCTGGGGCGGCTATTCAGTGACACGTGTGTCTGAGAGACTT 1371
||||||||...||||||||.|||..|||.|||||.||.||.||..||||
BL03534___pbp 1325 AAGATTCGTCATGGGGCGGATATAAAGTCACACGGGTTTCCGATCGACT- 1373
BSNT_00725___ 1372 CAA--CAAGTCGATTTGGAAAACGCCCTTATTACGTCAGACAATATTTAT 1419
|| .|.|||.|.|||||||||||.||.||.||.||.|||||.||||||
BL03534___pbp 1374 -AAGCGACGTCAACTTGGAAAACGCGCTGATCACATCCGACAACATTTAT 1422
BSNT_00725___ 1420 TTTGCCCAGAATGCGCTTGATATGGGAGCGGA-CACCTTCACAAAAGGCT 1468
||.|||||||.|||.|||||||..||...||| ||..||..| .|||||.
BL03534___pbp 1423 TTCGCCCAGACTGCCCTTGATACAGGCAAGGATCAATTTGTC-GAAGGCC 1471
BSNT_00725___ 1469 TGAAGACATTCGGTTTTTCAGAGGA----CGTTCCGTACGAATTCCCGAT 1514
||||..|||||||.||| ||||| | ||...||.||||||||||
BL03534___pbp 1472 TGAAATCATTCGGCTTT---GAGGAAAAGC-TTGATTATGAATTCCCGA- 1516
BSNT_00725___ 1515 CCAGAAATCGTC-----TATTGCAAATGACAAG--CTTGATTCAGACATT 1557
.|||.||.|| ||| ||||.| ||| .|.||.||.||.|||
BL03534___pbp 1517 --CGAAGTCTTCCTCCATAT--CAAACG--AAGGAATCGACTCGGATATT 1560
BSNT_00725___ 1558 TTGCTTGCGGATACAGGCTACGGACAAGGGCAAATGCAAATGTCTCCGCT 1607
.|.|||||.|||.||||.||||||||.||||||||||..|||||.|||.|
BL03534___pbp 1561 CTCCTTGCCGATTCAGGATACGGACAGGGGCAAATGCTGATGTCGCCGAT 1610
BSNT_00725___ 1608 TCACTT---GGCAACTGCTTACACGCCATTTGTTGACAAT---GGAGACC 1651
.|||.| ||||| || ||.||||| |||.||| ||| ||..|.|
BL03534___pbp 1611 ACACCTTGCGGCAA--GC-TATACGCC-TTTCTTG--AATGACGGTAATC 1654
BSNT_00725___ 1652 TTGTCAAACCG-ACGCTGATCAAAAAAGATTC-------ACAAACAGCTG 1693
|..||||.||| || |||||||||||.|| | |.||| |
BL03534___pbp 1655 TGATCAAGCCGCAC-CTGATCAAAAAGGA--CGGCGAAGAGAAA-----G 1696
BSNT_00725___ 1694 ATGTTTGGCACAAGCA---AGTGGTCACGAAGGAAGGGGCGGCAGACATT 1740
|..|.|||||.||..| |.||..||| ||| .||.||.|.||..|||
BL03534___pbp 1697 AAATATGGCATAAAAACGTACTGCCCAC--AGG-CGGAGCAGAAGCGATT 1743
BSNT_00725___ 1741 ACAAAAGGTCTGAAAGGCGTTGTGGAAGATGAGCGCGGATCAGCGTATCA 1790
||||||||..|.|||||||||||.|||||...||||||.||.||.||..|
BL03534___pbp 1744 ACAAAAGGGTTAAAAGGCGTTGTAGAAGACCCGCGCGGCTCGGCTTACAA 1793
BSNT_00725___ 1791 GCCTGTCGTAAAAGGAATCACAGTGGCCGGGAAAACAGGAACAGCCGAGC 1840
|||.||.||.|||||..|.||..|.||.||||||||.|||||.|||||.|
BL03534___pbp 1794 GCCGGTTGTCAAAGGGCTTACGATCGCAGGGAAAACGGGAACGGCCGAAC 1843
BSNT_00725___ 1841 TGAAAACATCAAAAGATGATAAAGACGGCACGGAAAATGGCTGGTTTGTC 1890
|||||||...||||||.||.||| ||||..|||||.||||||||...|
BL03534___pbp 1844 TGAAAACGAAAAAAGACGAAAAA---GGCAAAGAAAACGGCTGGTTCACC 1890
BSNT_00725___ 1891 GGCTACGATTACAAAAACAAAGACCTGCTTGTCGCCATGATGATCCAAAA 1940
|.|||.|||||||||||||||.||||..|..||.|.|||||||||.|..|
BL03534___pbp 1891 GCCTATGATTACAAAAACAAAAACCTTTTAATCACGATGATGATCGAGGA 1940
BSNT_00725___ 1941 TG-TGCAGGACCGCGGCGGCAGC-CACTATGTCGTTGAGAAAGCGAAAAA 1988
|| |.|| ||||||||||||||| || ||.||||||.|.||||.||||||
BL03534___pbp 1941 TGTTTCA-GACCGCGGCGGCAGCTCA-TACGTCGTTAATAAAGTGAAAAA 1988
BSNT_00725___ 1989 GCAATTTCAATCGAATTAA 2007
....|||.||| ||
BL03534___pbp 1989 AGTGTTTAAAT--AA---- 2001
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