Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02258 and BL03527
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02258___ykoX.1.5803.seq
# -bsequence dna-align/BL03527___ykoX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02258___ykoX-BL03527___ykoX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02258___ykoX-BL03527___ykoX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02258___ykoX
# 2: BL03527___ykoX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 658
# Identity: 454/658 (69.0%)
# Similarity: 454/658 (69.0%)
# Gaps: 38/658 ( 5.8%)
# Score: 1474.5
#
#
#=======================================
BSNT_02258___ 1 ---GTGGCTATCGAAGAGCTGGTTATGTC-ATGGATAGAAGCATTTAAAA 46
||.|.||||||||||.|..||.|.|| ||||.| ||.||||||||||
BL03527___yko 1 GTGGTCGATATCGAAGAGTTTATTTTATCAATGGCT-GAGGCATTTAAAA 49
BSNT_02258___ 47 GCTTATCTTATTTTGGAATATTTCTAGCGCTCAGTATTGAGTTTATCCCG 96
||.|.||.|||||.||.||.||.||.|||||..|.||.||.||..|.|||
BL03527___yko 50 GCCTCTCGTATTTAGGCATTTTCCTGGCGCTGTGCATCGAATTCGTGCCG 99
BSNT_02258___ 97 GCCGAAGTCGTCTTGCCGCTTGCGGGCTATTGGGTATCTAAAGGCGATAT 146
||.||..||||..||||||||||.||.||.|||||.|.|.||||.|||||
BL03527___yko 100 GCTGAGATCGTTCTGCCGCTTGCCGGATACTGGGTGTATCAAGGAGATAT 149
BSNT_02258___ 147 GACACTTGCCGGCGTTGTTTTGGCAGGATCGCTTGGAGGAGTGGCCGGTC 196
|.|..|...|||.||.|||...|||||.||.||.|||||.||.||.||.|
BL03527___yko 150 GTCGATGTTCGGGGTCGTTGCAGCAGGTTCACTGGGAGGTGTCGCAGGCC 199
BSNT_02258___ 197 CGCTTACGCTGTATTGGATAGGCCGGTACGGAGGAAGGCCGTTTCTTGAA 246
|.||.|||||.||.|||.|.||..|||||||.||..||||||||.|.|||
BL03527___yko 200 CTCTGACGCTTTACTGGCTCGGGAGGTACGGGGGGCGGCCGTTTTTGGAA 249
BSNT_02258___ 247 CGTTTTGGGAAGTATCTCTTTATTAAACCTGAAGCGCTTGATAAGTCAGA 296
||.|..||.||.||..|||||||.||.||||||||||||||.||.||.||
BL03527___yko 250 CGCTACGGCAAATACTTCTTTATCAAGCCTGAAGCGCTTGAAAAATCGGA 299
BSNT_02258___ 297 TAAATTTTTCAAAAAACATGGTGGCTTTGTCGCGTTCAGCGGCCGTTTCT 346
.|..|||||..||||.||.||.||.||||||||.||||||||||||||..
BL03527___yko 300 CAGGTTTTTTGAAAAGCACGGCGGGTTTGTCGCATTCAGCGGCCGTTTTA 349
BSNT_02258___ 347 TGCCTGGCATCAGGACATTGATTTCCATACCGTGCGGAATTGCAAAAATG 396
|.|||||.|||||.||..||||||||||.|||||||||.|.||.||||||
BL03527___yko 350 TACCTGGAATCAGAACGCTGATTTCCATTCCGTGCGGACTCGCGAAAATG 399
BSNT_02258___ 397 AATGTTTGGGTGTTTTCGCTTTATACATTCATTGCTATGCTTCCGATTAC 446
|||||.|||||.||||...|||||||||||.|.||.||....||||||||
BL03527___yko 400 AATGTGTGGGTATTTTGTATTTATACATTCCTCGCGATCACGCCGATTAC 449
BSNT_02258___ 447 ATTTGTATATGTTTATCTCGGTGTGAAGCTCGGTGAAAATTGGAAGGAA- 495
.||.||.|||||.|||.|.||..|..|.|||||.|||||.||| ||.||
BL03527___yko 450 GTTCGTCTATGTCTATTTAGGCTTTTACCTCGGCGAAAACTGG-AGCAAG 498
BSNT_02258___ 496 GTCGGC--TCTATTCTTGATCAATATATGCTTCCG------ATCGGGATA 537
|||||| .|||| |.||...|||..|.|||||| ||||||.|.
BL03527___yko 499 GTCGGCAGCCTAT--TGGACGGATACCTTCTTCCGGTCGGCATCGGGTTC 546
BSNT_02258___ 538 GCCATTTTGGCGCTTTTCCTGCTCTACTTACTGATGAA---AAAGAGGAA 584
..|.||||| |||.|.||.|||.|...|.|||| .|.|.||||
BL03527___yko 547 ATCGTTTTG------TTCGTTCTTTACCTTTGGTTGAAGGGCAGGCGGAA 590
BSNT_02258___ 585 GAAACGCA---CGCACTCCGAACAATTATCTGTATTTTT---GAAAAATA 628
.|||..|| ||||...|| |.||.|..|||.| .|||||||
BL03527___yko 591 CAAAATCAAATCGCAAAGCG------TTTCAGCCTTTATAAATAAAAATA 634
BSNT_02258___ 629 AACGTTGA 636
|...||||
BL03527___yko 635 AGGATTGA 642
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