Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00961 and BL03525
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_00961___ydfS.1.5803.seq
# -bsequence dna-align/BL03525___ydfS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00961___ydfS-BL03525___ydfS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00961___ydfS-BL03525___ydfS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00961___ydfS
# 2: BL03525___ydfS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity: 499/775 (64.4%)
# Similarity: 499/775 (64.4%)
# Gaps: 131/775 (16.9%)
# Score: 1422.0
#
#
#=======================================
BSNT_00961___ 1 ATGATTGAAC---TTGAAGTTGTCATTAGAACG---GTTGCCAGCTTTGG 44
||||.||||| |||||||..||.||.||.|| .|||| ||||||
BL03525___ydf 1 ATGAGTGAACATATTGAAGTAATCCTTCGATCGATTCTTGC---CTTTGG 47
BSNT_00961___ 45 ---CTTGCTGTTA--ATCGCAGAACGAATTTTAGGCAAACAGACAATCTC 89
.||..||.|| ||| |.||.|.||.||.|||||.|||||.||
BL03525___ydf 48 TATTTTATTGGTAGGATC-----AAGATTGTTGGGAAAACAAACAATTTC 92
BSNT_00961___ 90 TCAAATGACGATTTTTGATTTTATTGCGGCGATCACACTAGGGGCGATTG 139
.|||||||..||.||||||||||||||..|.||.|||.||||.||.|||.
BL03525___ydf 93 ACAAATGAATATCTTTGATTTTATTGCATCAATTACATTAGGCGCTATTA 142
BSNT_00961___ 140 CTGCCGGAT-TAGCTTACAATACTTCAATAAAACCGCATAATATG----- 183
||| |..|| |.||||..|||||.||..|.|||...|||.|.|||
BL03525___ydf 143 CTG-CAAATCTGGCTTTTAATACCTCTCTTAAAATTCATCACATGGTACT 191
BSNT_00961___ 184 GCCATTTCGTTTAGTA----TTTTTGTG---CTAACCATT---TTTCTAA 223
|.|.||| |||| || |||||||| .||.|||.| |.|.||
BL03525___ydf 192 GGCTTTT--TTTA-TATTTGTTTTTGTGATCTTAGCCACTGCGTATATA- 237
BSNT_00961___ 224 TTTCGTTCCTGTCGA-TAAAGAACAGGAAGCTGAGGAAATTTTTTGCCGG 272
|.|||.|.|| |.| ||.|||..|| ||||||||||||||
BL03525___ydf 238 -----TCCCTTTGGAGTCA--AAAAGGCCGC-----AAATTTTTTGCCGG 275
BSNT_00961___ 273 AGATCCTACAGTGCTGATTCAAAACGGGAAGATACTTGAATCA-AATATG 321
.|||||.||.||..||||||||||.||.||..|.|||||| || ||.|||
BL03525___ydf 276 TGATCCAACTGTTGTGATTCAAAATGGAAAAGTTCTTGAA-CACAACATG 324
BSNT_00961___ 322 AGGAAAATGCGTTACACACTTGATTATTTAAATCAGCAA-TTACGGGA-A 369
.|.|||||||||||.|||.||||||||||.|||||.||| ||| || |
BL03525___ydf 325 CGAAAAATGCGTTATACAATTGATTATTTGAATCAACAACTTA---GAGA 371
BSNT_00961___ 370 AAAGAA-ATATTTAATATCGAAGAAGTTCTTTTTGCCATTCTTGAAACGA 418
|||||| .||||.||.|||||||||||.||.|.|||||||.|||||||.|
BL03525___ydf 372 AAAGAATGTATTCAAAATCGAAGAAGTACTCTATGCCATTGTTGAAACAA 421
BSNT_00961___ 419 ATGGTCAGC-TGACTGTGTTAAGAAAACCGCAATTCCGGCATGTGACCAA 467
|||| .|.| |.||.||.||||.||||||.||||||||..|||||||.||
BL03525___ydf 422 ATGG-GACCTTAACAGTATTAAAAAAACCACAATTCCGAAATGTGACAAA 470
BSNT_00961___ 468 ACAGGATTTAATGATTGCGGTAAAC----CAAGAACACAGG----CTTCC 509
|.|||||||...|.|||| .|| |.||| ||| ||.||
BL03525___ydf 471 AAAGGATTTGTGGGTTGC----CACTACGCCAGA----AGGAAAACTCCC 512
BSNT_00961___ 510 GATAGAGCTTATTATGGACGGAGAAATCATTGAGAAT----AATTTAAAG 555
|||.||..|.||.|||||.||..||||.| ||||| |.||.||||
BL03525___ydf 513 GATTGAATTAATCATGGATGGGAAAATGA---AGAATGAAAACTTGAAAG 559
BSNT_00961___ 556 CAGAATCGTTTGACGGAATCCTGGCTT----TTGGAGGAATTGCGAAAAA 601
|.||||...|.||..|..|.||| || |..||| || ||||||
BL03525___ydf 560 -ATAATCAACTCACTCAGGCATGG-TTACAATCTGAG--AT---GAAAAA 602
BSNT_00961___ 602 GAG----------ACATAAAGGTGAAAGAGACCG---TGTACGCAGT--- 635
|.| || ||.|||| | |.||.|||||
BL03525___ydf 603 GCGTGGTCTATCCAC----AGATGAA-------GTTTTTTATGCAGTATT 641
BSNT_00961___ 636 -GCTGCTGGGTAATGGAGATATTTATGTGGATCAATATAAAGACCATATA 684
.|..||| |||||.||||.|||.|.|||..||||.||||.||||||
BL03525___ydf 642 ATCACCTG----ATGGAAATATCTATATAGATACATATGAAGATCATATA 687
BSNT_00961___ 685 TCAGTC-CCTATGGATAAGGAATGA 708
||.|| .||.|.|||||.||||.|
BL03525___ydf 688 -CATTCTTCTTTTGATAAAGAATAA 711
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