Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05223 and BL03520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:21
# Commandline: needle
# -asequence dna-align/BSNT_05223.1.5803.seq
# -bsequence dna-align/BL03520___yomQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05223-BL03520___yomQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05223-BL03520___yomQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05223
# 2: BL03520___yomQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 359
# Identity: 182/359 (50.7%)
# Similarity: 182/359 (50.7%)
# Gaps: 109/359 (30.4%)
# Score: 433.0
#
#
#=======================================
BSNT_05223 1 ATGAAACAAATATACAAATACGACAACAAAATGAATTATGTGCCGTCAGA 50
.|||||....|.||||||||.||..|.|||.|.|||||..|||||..|||
BL03520___yom 1 GTGAAATGGCTTTACAAATATGATGAGAAATTCAATTACATGCCGGGAGA 50
BSNT_05223 51 AAATATGATTA--TCAATGACGGCGAGGAGATTCCGGAAGGGTA---CAC 95
|.|.|| |.| ||.|.||||.||..|||.|.||||||...|| |..
BL03520___yom 51 AGAAAT--TCAAGTCGAAGACGACGCTGAGCTACCGGAATTTTATTGCGA 98
BSNT_05223 96 AGATATCCCTCCTGTTAATCCCGACGGC---------GCCGGCATGTATA 136
||..|..||.||| |||||| ||| |
BL03520___yom 99 AGTAAAACCGCCT---------GACGGCCTATACCTAGCC---------A 130
BSNT_05223 137 AACCGGTGTTCGAT------AAAGGCAAATCGGAATGGCGCGAAACAGCT 180
|| ||.||| ||||| |||||||...|||.|.||.
BL03520___yom 131 AA------TTTGATCCTGCGAAAGG------GGAATGGTTTGAATCGGCC 168
BSNT_05223 181 ACACAAGAATACATCGACAGCTTACAGCCGCCTGACCCCGGACCG----- 225
||..|||||||.||.||.|||||.|||||.||.||.||.|.||||
BL03520___yom 169 ACCAAAGAATATATTGAAAGCTTGCAGCCTCCGGAGCCTGAACCGGGCAT 218
BSNT_05223 226 -----------TCAGAAATCGAAGTCCTTCA--------GAAACAAGT-- 254
|.|.|||.|.||.|.|||.| | |||||
BL03520___yom 219 AACTGATCTATTGAAAAAACAAAATGCTTTACTCTCATTG---CAAGTTG 265
BSNT_05223 255 ----------GGCGGATCTATACTACTTAATCGCGTTA------GGAGGA 288
|||.|||.| |.|| |||||| ||.||.
BL03520___yom 266 CGCGCCTGCAGGCTGATGT-------TGAA--GCGTTAAAAGGGGGCGGG 306
BSNT_05223 289 GCGTAA--- 294
||.|.|
BL03520___yom 307 GCATCATGA 315
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