Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02843 and BL03515
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_02843.1.5803.seq
# -bsequence dna-align/BL03515.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02843-BL03515.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02843-BL03515.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02843
# 2: BL03515
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2010
# Identity: 850/2010 (42.3%)
# Similarity: 850/2010 (42.3%)
# Gaps: 921/2010 (45.8%)
# Score: 1557.0
#
#
#=======================================
BSNT_02843 1 TTGAAT--------CAGATGTTTGTCCATGACAT-------------CAA 29
|| ||||| |||.|..|.||.|| |||
BL03515 1 ----ATGGCAAACACAGAT-TTTATAAAGGAAATTGCACCAGACGCCCAA 45
BSNT_02843 30 AACGGGCC----AAAAACATGAGCTTATTCACG------------TTG-- 61
| |.|.| ||||..|||| |||||.|| |||
BL03515 46 A--GAGTCTATAAAAAGTATGA---TATTCTCGCGTCTCTCATTATTGCT 90
BSNT_02843 62 --AACCT------AAAGTGAATGATGACGTCA------CT---------- 87
|.||| |.||.|.||| |..|.|| ||
BL03515 91 CAAGCCTGTTTAGAGAGCGCATG--GGGGACAAGCGGGCTGGTGCAGAAA 138
BSNT_02843 88 GGGAAAAAGGATTTGTCTTTT------TCAATTACCTTG---ACTGAATA 128
|||||||| |||.| |||| | ||| ||
BL03515 139 GGGAAAAA--------CTTATTCGGCATCAA-------GGGTACT---TA 170
BSNT_02843 129 TAATCAGATTCCTTTCAATGCTTTAGTCGGAAGGAATTTTATTATTATCG 178
||| |..||||| ||.||.|.| |.|.|
BL03515 171 TAA--------CGGTCAAT----------------ATGTTCTCA-TGTGG 195
BSNT_02843 179 ACGAGGTTCGG--TATAAAAAGCAGCAGTATTTCATTAACACGCCTACGA 226
|||| |.| |||.|.||| |||.|.|.|.|| |
BL03515 196 ACGA----CTGAATATGATAAG-AGCGGAAATGCA--------------A 226
BSNT_02843 227 TCAAACAGGAAGGCGCTCTGCTTACTAAAGACATAACAGCCACGCAT--- 273
.|||| |.|...|||| ||||.|.||| |||.| |||
BL03515 227 CCAAA---GTACAAGCTC-GCTTTCGAAA---ATATC-------CATCTT 262
BSNT_02843 274 -------ATCTATTC---CTTTAGGGCGATCAAGCATGT-TGTTCACGAG 312
|||.|||| .||||| .|||| .||| |||..|||..
BL03515 263 GGTATGAATCGATTCAGGATTTAG-----CCAAG-TTGTATGTGAACGGA 306
BSNT_02843 313 ACGATAGAGGGCACAAAAACTCTCAACGAAGCACT-TAAGCACGCAGTGA 361
||| ||..||.| || ||||.|||| || |.||.||
BL03515 307 ACG--AGCTGGGA---------TC--CGAATCACTATA---AAGCTGT-- 338
BSNT_02843 362 AAGGCAGTGAAATCACATTTACAATTATGCCGGATGCGAAGGGGATCGGG 411
||.|.|.|||| |...|||||| |||||.|| |.
BL03515 339 -AGTCGGCGAAA--AAGATTACAA-------------GAAGGCGA---GT 369
BSNT_02843 412 GCT-------AAAAAGCTGGAGGGGTTCGGCAATAAAAAGACCTCTGAGC 454
||| .||||||| ||||..||.| ||||.|
BL03515 370 GCTGCACTTGTAAAAGCT-----GGTTATGCGA-----------CTGACC 403
BSNT_02843 455 ----TGATG-GACGAAA-----------TCATTTCTACCT---------- 478
|.||| ||| ||| |||||...||||
BL03515 404 CCAATTATGCGAC-AAAGTTGAATAATCTCATTCAAACCTACAAGCTAAC 452
BSNT_02843 479 -----------------TTGGGGT------------TGA--AATCATCCC 497
.|||||| ||| || ||
BL03515 453 ACAATATGACACTGTGGGTGGGGTGCCAGAAGGACCTGACGAA-----CC 497
BSNT_02843 498 GGATAACA-CGCATTTATAC---ATCTACA-AAAAAGCAGGCAAAGAGAT 542
||| |||| || |||| ||| || |||.|.||.||||
BL03515 498 GGA-AACACCG-----ATACCTGATC--CAGAAATACCAAGCAA------ 533
BSNT_02843 543 TGTAAAAAGGCTGGATA-ACCTTTCA---------AATCTAACGTC---- 578
|.||.|.|.|.|||.| ||.||.|| |||||..||||
BL03515 534 -GGAATATGACGGGAAAGACATTACACTCAATCAGAATCTGCCGTCAGAT 582
BSNT_02843 579 -----TTT---ACAG-ATCA-----CAACAAGCGAAGATAACACGACAAC 614
||| |||| .||| |||||| ||.|||..||.
BL03515 583 ACCGATTTCCCACAGCTTCATGTGTCAACAA--------AAGACGGAAAA 624
BSNT_02843 615 ACGG--GTGAAAGGAT-ACGGG----------AAGCTCAAGGAAGATAAA 651
|.|| |||.|| || ||||| .|.||.|..||.||| |.
BL03515 625 AAGGTTGTGGAA--ATAACGGGTGTGTCAGTTGATCTGACAGACGAT-AC 671
BSNT_02843 652 GACATCCTGGG--CGATCAGT----CCATTCCCTACGATTCTAAAACG-- 693
|||| || .||..||| || |||.|||..| |.||||||
BL03515 672 GACA-----GGTAAGAAGAGTTTTACC-TTCACTATCA--CAAAAACGCA 713
BSNT_02843 694 -------GGCAC----------------CTGGGCG-TATGATAGTTCA-- 717
||||| .|||.|| ||..|||.||.|
BL03515 714 GGAGAACGGCACAGAATTTGATTTATTGGTGGACGATAACATACTTTATC 763
BSNT_02843 718 ---------------TTAA-----AAGCAGATTACA----------CGA- 736
|||| ||..|.|||||| |||
BL03515 764 TGGATGAGAAAAAATTTAAACACCAAAAATATTACATTACGGGTGTCGAA 813
BSNT_02843 737 ----------AGAAAA-------TAG---------------GAGCCACGT 754
|||||| ||| .||||||.|
BL03515 814 CTTCATCAAGAGAAAAATGTTATTAGTAAAACCGTTACAGCAAGCCACAT 863
BSNT_02843 755 TTTC----TTTTTCT--TTCACAGGGACAGGCTTTAAATTCA--AAACTC 796
.||| |..|.|| ||.||| ||||| ||||| ||||
BL03515 864 ATTCACTGTGCTGCTTATTAACA---ACAGG------ATTCATGAAAC-- 902
BSNT_02843 797 TTGTGTCGAAGCTGGGTGGTAAATGGGAATTTAAGATAG----------- 835
|||.||.|| |||.|||||||.|
BL03515 903 -TGTATCAAA----------------GAAATTAAGATTGAGAGATGCGCT 935
BSNT_02843 836 -------GCGAT--------CAGACGAAAACCATAT-----------CTG 859
|||.| |||||...||..|||| |||
BL03515 936 TGATTTTGCGCTGAAGAATACAGACTTCAAATATATTTTTAAGACGCCTG 985
BSNT_02843 860 ----------------------TCTATAAA--------GATTCAGACCCG 879
||.|.||| |||..|.||.||
BL03515 986 AGAGTGAATTTGAATCAGCAGATCAAGAAAATTTCGGTGATAAAAACTCG 1035
BSNT_02843 880 ACAGA---AAAAGAGTTTGATATCATTCGCGG------------------ 908
||||| ||..|| |||.|||||| |.||
BL03515 1036 ACAGAGCTAATGGA---TGAAATCATT-GAGGATTATGGGATTGAAATAG 1081
BSNT_02843 909 -CCTGGACAGT---AAAACTTATAAGGTAGTGGCTACCTTTAAAGGCAGG 954
|.||||.|.| ||||.||||| .|||| ..||||...||
BL03515 1082 ACGTGGATAATTACAAAATTTATA--------TCTAC--AAAAAGATGGG 1121
BSNT_02843 955 GACA-GCAATA-----ACCCTA--------ATACAAAA-----GGCA--- 982
||.| |.|.|| |||||| .||.||.| ||||
BL03515 1122 GAAACGGATTAATTTCACCCTAGATTCGCGCTATAATATGCCCGGCATTT 1171
BSNT_02843 983 CA-----AAGAAAGTCGATCCGGTCA----TGTATCTTCTGCGCGGCAAC 1023
|| ||.|||.||| || .||| ||||
BL03515 1172 CAATTACAACAAACTCG-------CAAAACAGTA------------CAAC 1202
BSNT_02843 1024 ATTATCG-----GGGTGTACAGGACTTTCAAGAA------------TGAA 1056
| || |||..|||.||.|.||.||.|| |||.
BL03515 1203 A----CGTGCCTGGGGATACGGGGCCTTAAAAAAGGGGAGCAGTACTGAT 1248
BSNT_02843 1057 GATGAAA------AGTATGTCTTTCCTCCGGTCA-CCTAT-------GTT 1092
||..||| ||||.|..|| |.| ||||| .||
BL03515 1249 GACAAAAACCCTCAGTACGAGTT--------TGAGCCTATTTTATACATT 1290
BSNT_02843 1093 CATCCAGAAGAAAAAAAGTTTCTGATTAACGGGCAGCCATCCTGGGCGGA 1142
||||||||.|||||.||.||..|||||.|.|||.|||||..||||||.||
BL03515 1291 CATCCAGACGAAAAGAAATTCTTGATTGAAGGGAAGCCACGCTGGGCTGA 1340
BSNT_02843 1143 ACCGGTCATGGATGA----TTCAATCAAGACA-AAGGATGA---CATG-A 1183
||||.|||.|||||| |..||..|||.|| .||.|||| | || |
BL03515 1341 ACCGATCAGGGATGAGCGCTATAAAAAAGCCAGCAGTATGATTTC-TGCA 1389
BSNT_02843 1184 TTAAGCTACTTAAAACCAAAGTCAATCCTTACGCAGAGGTGTC-CTATGA 1232
||| ||||...|.||.|||||.||..|.||..||.| .|| ||
BL03515 1390 TTA--------AAAAGGCATGTGAATCCATATCCGGAAATGACGGTA-GA 1430
BSNT_02843 1233 TGCCGA------------CTATGTG--GAA--TTGTTAGATCAGGCCTTG 1266
.||.|| |||||.| ||| || |||||
BL03515 1431 AGCTGATTTCCAAAAAATCTATGAGCCGAAGCTT-TTAGA---------- 1469
BSNT_02843 1267 GCTGATATAG-AAGAGCCGGTTATGG-CAGGGGACACCATTCGTGTATAT 1314
|||..|| |||| .||.||| .|||.||||||||.|.|||.|..
BL03515 1470 ---GATCGAGCAAGA----TTTCTGGAAAGGCGACACCATCCATGTCTTG 1512
BSNT_02843 1315 GCTGACACGCCTCTAAACGGGATCACTTTTGATGGGAAGCTGAGA----- 1359
|||||.|||.|| .|.||.|||||.|||||.|..||..|||||
BL03515 1513 GCTGATACGGCT---GATGGTATCACATTTGAAGATAATGTGAGACTTGT 1559
BSNT_02843 1360 -----------GCAACAGGGGCCTCATACACCCATTAA------------ 1386
.|||| |||| |..||||||..|
BL03515 1560 GTCCATCCAGTACAAC-----CCTC-TGAACCCATACAGCAGTCCGAAAT 1603
BSNT_02843 1386 -------------------------------------------------- 1386
BL03515 1604 TGACGTTTGCGAACTTCCGCAAAGATATCCAAAGCATAAATGTGGATCAA 1653
BSNT_02843 1386 -------------------------------------------------- 1386
BL03515 1654 GCGAAAAGGCTTAGAGATCAAAAACGATATATTGACCAGCTTTTCAAAAC 1703
BSNT_02843 1386 ---------- 1386
BL03515 1704 GCTCAGGTAG 1713
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