Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02837 and BL03510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_02837.1.5803.seq
# -bsequence dna-align/BL03510.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02837-BL03510.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02837-BL03510.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02837
# 2: BL03510
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 756
# Identity: 349/756 (46.2%)
# Similarity: 349/756 (46.2%)
# Gaps: 309/756 (40.9%)
# Score: 619.0
#
#
#=======================================
BSNT_02837 1 ATGGCCCG-------------TACGGGATTAGATGGCATTAAATATGCTG 37
|| |||.| |||.|||||.||.|||.||||||.||| |
BL03510 1 AT-GCCTGAATACAGTTCAGTTACCGGATTGGAAGGCGTTAAATTTGC-G 48
BSNT_02837 38 ----------AGGTTGGTGAAGATG----------------AAAAAGCA- 60
|| |||.||| |||||..|
BL03510 49 CCTTTAAAAAAG------GAAAATGGCTTTTATGTGGCTACAAAAATTAT 92
BSNT_02837 61 --ATT---------CAGATTAA---GAGTATGCCAGGTGCAAT-CGAATC 95
||| || ||||| || |||| |||| ||
BL03510 93 TGATTACCCTTACGCA-ATTAACGCGA-------AGGT-CAATACG---- 129
BSNT_02837 96 GAAACTAGATGTACCATCCGAACTAGCAACTCTTTATGCTGATGAC---- 141
|||| |||| ||| ||.||..|..|||||.||..||
BL03510 130 GAAA----------CATC--AAC-AGAAAAGCAGTATGCAGACAACAAAC 166
BSNT_02837 142 -GGT--ATTTTTGCGGT---GAAAAGTTCCGGGGTTGGGGAGGCAAAATT 185
||| | |.|.||.|| ||...||||| .|||||||
BL03510 167 TGGTGGA-TATGGCTGTCACGACTGGTTCC------------ACAAAATT 203
BSNT_02837 186 AGAAC-TGAACCTCG----CTGACCTTACCACAGAAATGAAAAAGACACT 230
.||.| ||||...|| |||.| ||||.|||
BL03510 204 GGAGCTTGAAATGCGGGATCTGCC-----------AATGGAAA------- 235
BSNT_02837 231 TTTAGGTGTGAAGGTTGTGGATGGTATTGAAGA----------------- 263
|||.||.| ||| |||| .|||.||.|||||
BL03510 236 TTTTGGAG-GAA--TTGT--TTGGGATAGAAGAAACAGACGGGATCTATA 280
BSNT_02837 264 -GTACCATAAAGA----TATGGAGCC--TCCTTACG-----TTTGTATCA 301
|| .||.||||| |||.|.||| ...||.|| |||.||
BL03510 281 TGT-TCAAAAAGAATGTTATCGCGCCATGGGTTGCGATGTCTTTCTA--- 326
BSNT_02837 302 CGTGG------------CGGCAACG--TCACCATGACAAAGGTTATGTGT 337
||| |||||| | ||.|||||
BL03510 327 --TGGGCCAAAAGCGAACGGCAA-GAATCGCCATG--------------- 358
BSNT_02837 338 ATTACGCCTTGTTAAAAGG-GAAGTTCGGTCCCCCGTCTTC-------AG 379
||.||.|.||.|||.|| |...||| ||||| .|
BL03510 359 --TAGGCTTAGTGAAAGGGCGTTTTTC---------TCTTCCGGATGATG 397
BSNT_02837 380 AGGGGAAATCAAAAGAGGATAAGGTCGATTTTCAAACAG----------- 418
|..|||||.|||||||.||.|||...||||||||.||.|
BL03510 398 AATGGAAAACAAAAGAAGAAAAGACTGATTTTCAGACGGTCAAACTTTCT 447
BSNT_02837 419 -----ATTCCATA-GAAGGGC-----AGTTCATGCCTCGGAA--ATT--- 452
||| || |.||.|| ||...|.||||...|| |||
BL03510 448 GCTGAATT---TATGGAGCGCGAACAAGACAACGCCTATAAAGTATTGGC 494
BSNT_02837 453 ---TGACG--GGAATGTATTTCTGATTGG-------TTATGATCAAAATG 490
|||.| |.|..|.|||||...|||| ||||| |||
BL03510 495 TGATGAGGACGCACCGAATTTCAATTTGGACAAGTTTTATG----AAA-- 538
BSNT_02837 491 AAGGGTTCACACTTGAGAAATTC-TATCAGCGTGCATATGGCATGTTGCC 539
|||.|| ||| |.|||.| |||.| |.|| ||
BL03510 539 AAGTGT------TTG-GCAATGCTTATAA------AAAT---------CC 566
BSNT_02837 540 AGAC---GGC-ATGACAACAGAAGAAGTAAGTGCAGACTTAGGAAA---- 581
.||| ||| .|||.||.| ||...||.|.||||.|.|||||
BL03510 567 GGACTCAGGCTCTGATAATA----AATCCAGCGTAGACATTGGAAAGACA 612
BSNT_02837 582 --ATAA 585
||||
BL03510 613 GTATAA 618
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