Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02830 and BL03504

See Amino acid alignment / Visit BSNT_02830 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:36
# Commandline: needle
#    -asequence dna-align/BSNT_02830.1.5803.seq
#    -bsequence dna-align/BL03504.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02830-BL03504.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02830-BL03504.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02830
# 2: BL03504
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1500
# Identity:     734/1500 (48.9%)
# Similarity:   734/1500 (48.9%)
# Gaps:         507/1500 (33.8%)
# Score: 1280.0
# 
#
#=======================================

BSNT_02830         1 ATGTT--ATCTGAAAAAATTAAGGA-ACTAAGA---TCA-----------     33
                        ||  |.|.||||||.|||..|| ||| .||   |||           
BL03504            1 ---TTGAAACAGAAAAAGTTATTGAGACT-TGATATTCAATTTTTTGCCG     46

BSNT_02830        34 ----CAGATTACTCAAAAACAAA------------CAGCCATT-------     60
                         |.||.|...||||||..||            |||.|.||       
BL03504           47 GGGGCGGAATGTCCAAAAAAGAACGAGAATTGCGCCAGACCTTGGCGGAA     96

BSNT_02830        61 -AA--TACAAAAATCACAGAAGCCCATAAAC-GAGCAGAAGAAGACAAGC    106
                      ||  |||||.|||   .|||||      || || |.||.||||..||..
BL03504           97 AAACGTACAAGAAT---TGAAGC------ACTGA-CCGATGAAGGGAAAA    136

BSNT_02830       107 TGGACGAAGCTACA---------------GCTC------TGAAAGGTGAA    135
                     ||||||||||.|.|               ||||      |.||||.|.||
BL03504          137 TGGACGAAGCCAAAAAACTGCTTGCTGAGGCTCAACAAATTAAAGATCAA    186

BSNT_02830       136 ATCACTTC---CATGAAAGAAGAGCTTGACGGCCTGCAGAAAAAGCTTGC    182
                     |    |||   |||  |.||.||  ||.|||           ||.|.|||
BL03504          187 A----TTCAAACAT--ATGAGGA--TTTACG-----------AAACATGC    217

BSNT_02830       183 GGAG------TATG---AAG-AGTTAGCCG-GGCTTAAG--CCGG-----    214
                       ||      ||||   ||| ||  ||||| .||  |||  ||.|     
BL03504          218 --AGGTTTCATATGCACAAGAAG--AGCCGCAGC--AAGATCCAGAGGCA    261

BSNT_02830       215 -AGAACCCTGCACCAGCTGGGAGTAAAGAAGAAGA-------AGAAGACG    256
                      ||||||| |||.||||      .||.|  ||.||       |.||.| |
BL03504          262 AAGAACCC-GCAACAGC------CAACG--GATGATATCGCCAAAACA-G    301

BSNT_02830       257 AGGAGAAAAGATCAATG--CATGGCGGAGGCTTCCGTACAATT---ATCA    301
                     |.|.||||| ||| |||  ||        ||||        ||   |||.
BL03504          302 ATGCGAAAA-ATC-ATGCTCA--------GCTT--------TTTGCATCT    333

BSNT_02830       302 AACCTGGGAAGACAGAAGAGGTA--AGAG-CTTTTGAAGAGTTTCTGCGA    348
                     ..|||..||  ||||...|.|||  |.|| ||.|||        |.||||
BL03504          334 GCCCTTAGA--ACAGGCAAAGTACCACAGCCTCTTG--------CCGCGA    373

BSNT_02830       349 TCAA--AAGG---GGAAAAGCGCGACGGGTTGAAATCTGATGGAGCTGAA    393
                     |.||  ||||   |||..||..||.||||       ||.||.|..|.|.|
BL03504          374 TGAAAGAAGGTGTGGATGAGGACGGCGGG-------CTTATTGTACCGCA    416

BSNT_02830       394 GTGCTGATTCCTATTGATGTAATCACTAAGCCACAACAGGAACTGGAA--    441
                     |    |||..||                  ||||.|.|..||.||.||  
BL03504          417 G----GATATCT------------------CCACGAAAATAAATGAAAAA    444

BSNT_02830       442 -GACGT---TGTG-GACCTTGGCACAATGGTAAATAACGTTTCTGTTACA    486
                      |||||   |.|| .||.|||||        ||||..|||        |.
BL03504          445 CGACGTCAATTTGATACGTTGGC--------AAATCTCGT--------CG    478

BSNT_02830       487 ACTTCA-TCTGGCACTTATCCA-----------------GTTCTGGAGAA    518
                     |..||| ||.||    ||||.|                 |||||.|| ||
BL03504          479 ATGTCATTCCGG----TATCAACAAACAAAGGGTCAAGGGTTCTTGA-AA    523

BSNT_02830       519 CGCTAGCACACAACTCAACTCTGTAGAAGAACTAGAGAAA---------A    559
                     ..|||||..|.|  |||.|.|..|||.|.|.||.|||.||         |
BL03504          524 AACTAGCGGATA--TCACCCCGTTAGTAAATCTTGAGGAATTAGCAGATA    571

BSNT_02830       560 ATCCAGAGTTAGCGAAACCAAAGTTTAAGAAGGTGGAGTGGAAGGTTGTA    609
                     .|..|||.||||.|||.||.||.|||.|.||..|..|||..|...||..|
BL03504          572 TTGAAGAATTAGAGAACCCTAAATTTGAAAACATAAAGTATAGCATTAAA    621

BSNT_02830       610 -AC-ATACCGCGGTCAATTGCCAATTTCTCAGGA--GGCTATTGACGATT    655
                      || ||.|||.|.|  .|||....|||||.|.||  .||  |||..|||.
BL03504          622 GACTATGCCGGGAT--TTTGGTTCTTTCTAATGATTTGC--TTGCAGATA    667

BSNT_02830       656 CAGGTGTTG-ACTTAACGGCTCTTGTAGCAAATT----ATTTGC------    694
                     ||...|..| ||||        |||.||.|..||    |||.||      
BL03504          668 CACAAGAAGCACTT--------TTGCAGTACCTTTCTAATTGGCTTGCCA    709

BSNT_02830       695 AACAGAT------TGA-ACGCAATACACG-TAATTC---ACGAATTGCTG    733
                     ||.|| |      ||| .||||||  ||| |.||||   |..||||    
BL03504          710 AAAAG-TCGGCCGTGACCCGCAAT--ACGTTGATTCTTAATCAATT----    752

BSNT_02830       734 CAGTTCTGCGCACATTTACAACGATGACAGTCTCAGGAA--CTGACGAAC    781
                      ||      |.|||.||.|||..|..|||||.||  |||  ..|||||..
BL03504          753 -AG------GAACACTTGCAAAAACCACAGTATC--GAAGCAGGACGACA    793

BSNT_02830       782 TTAAGAAAATTCTAAATGTGTATTTAAAACAGGCTTATAAGCGTGATATT    831
                     ||||..|.|||||.|||||..|..|..|.|.||||..|||         |
BL03504          794 TTAAAGACATTCTCAATGTCAAACTTGATCCGGCTATTAA---------T    834

BSNT_02830       832 GTCGCAACT----TCTTCAGCGTTCCAAT------------TCTTAGATA    865
                     |.|.|.|||    |..||| ||..|||||            |.|||||||
BL03504          835 GCCACGACTAAAGTTGTCA-CGAACCAATCAGGATTTAACGTGTTAGATA    883

BSNT_02830       866 CGTTGAAAGA-----TAAAAACGGACAGTACATTTTACAGCAAAA---TA    907
                     ...|||||||     |     |||.|..|||.|..|.||||..||   ||
BL03504          884 AACTGAAAGACGCTTT-----CGGCCGTTACCTGCTTCAGCCGAACCCTA    928

BSNT_02830       908 TTTCATCCCCATCCGGAAAAGTATTGTTTGGGATACCG--AAC--ACAGT    953
                      .|.||  |||.|...||||.|||||||.||.|..|||  |.|  .||.|
BL03504          929 -CTGAT--CCAACTAAAAAATTATTGTTCGGTAAGCCGGTATCCGTCATT    975

BSNT_02830       954 TGTAGATGATCTTGT-TTTG---------GGT-GAAAAAGATGGCGACGC    992
                     |.| |||.|    || ||||         ||| .|||||     ||||  
BL03504          976 TCT-GATAA----GTATTTGCCAAACGGCGGTACAAAAA-----CGAC--   1013

BSNT_02830       993 GGT------TAT--GTTTATC---GGGGA--TTTAAAAAGGGCGGT----   1025
                       |      |||  .||.|||   ||.||  ||.||.||  ||.||    
BL03504         1014 --TCCAAAATATCCATTAATCATTGGAGACCTTAAAGAA--GCTGTCAAA   1059

BSNT_02830      1026 -TCTTTTTGCG--------AATCGATTAAAAGCTACAGCGAAATG--GGT   1064
                      |||||...||        |.||.|||..|| |.||    |||||  |||
BL03504         1060 CTCTTTGATCGTCAGCAATATTCCATTTTAA-CGAC----AAATGTCGGT   1104

BSNT_02830      1065 GGAAAATGAT----------CTTTATGGACAGGTCCTTTCCCTGGCGATT   1104
                     ||.|||..||          ||.||..||.|            .||||.|
BL03504         1105 GGTAAAGCATTCTACCGTAACTCTACAGATA------------TGCGAAT   1142

BSNT_02830      1105 -------CGTTTCGACGTT------------AAGAAAGCTGATGACAAAG   1135
                            |||...||||||            |.|.|.||||.||...|.|
BL03504         1143 CATTGAACGTGAGGACGTTGTACTTTGGGACACGGATGCTGTTGTTTACG   1192

BSNT_02830      1136 CCGGCTATTTTGTAACAATCAA---------TCAACCGACAA--------   1168
                     |.|   |.||||.|.|.||.||         ||  |||||||        
BL03504         1193 CGG---AATTTGCATCTATTAAAGACGCTGTTC--CCGACAATGAAACTC   1237

BSNT_02830      1169 CTAG---------CACAGAAGATCAGTCATCGGTAGACGTGGGACAATAA   1209
                     |.||         ||||||||||.|   |||.||.|||||.|||.|||||
BL03504         1238 CAAGTACCGGCGACACAGAAGATAA---ATCAGTTGACGTTGGAAAATAA   1284


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