Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02830 and BL03504
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_02830.1.5803.seq
# -bsequence dna-align/BL03504.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02830-BL03504.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02830-BL03504.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02830
# 2: BL03504
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1500
# Identity: 734/1500 (48.9%)
# Similarity: 734/1500 (48.9%)
# Gaps: 507/1500 (33.8%)
# Score: 1280.0
#
#
#=======================================
BSNT_02830 1 ATGTT--ATCTGAAAAAATTAAGGA-ACTAAGA---TCA----------- 33
|| |.|.||||||.|||..|| ||| .|| |||
BL03504 1 ---TTGAAACAGAAAAAGTTATTGAGACT-TGATATTCAATTTTTTGCCG 46
BSNT_02830 34 ----CAGATTACTCAAAAACAAA------------CAGCCATT------- 60
|.||.|...||||||..|| |||.|.||
BL03504 47 GGGGCGGAATGTCCAAAAAAGAACGAGAATTGCGCCAGACCTTGGCGGAA 96
BSNT_02830 61 -AA--TACAAAAATCACAGAAGCCCATAAAC-GAGCAGAAGAAGACAAGC 106
|| |||||.||| .||||| || || |.||.||||..||..
BL03504 97 AAACGTACAAGAAT---TGAAGC------ACTGA-CCGATGAAGGGAAAA 136
BSNT_02830 107 TGGACGAAGCTACA---------------GCTC------TGAAAGGTGAA 135
||||||||||.|.| |||| |.||||.|.||
BL03504 137 TGGACGAAGCCAAAAAACTGCTTGCTGAGGCTCAACAAATTAAAGATCAA 186
BSNT_02830 136 ATCACTTC---CATGAAAGAAGAGCTTGACGGCCTGCAGAAAAAGCTTGC 182
| ||| ||| |.||.|| ||.||| ||.|.|||
BL03504 187 A----TTCAAACAT--ATGAGGA--TTTACG-----------AAACATGC 217
BSNT_02830 183 GGAG------TATG---AAG-AGTTAGCCG-GGCTTAAG--CCGG----- 214
|| |||| ||| || ||||| .|| ||| ||.|
BL03504 218 --AGGTTTCATATGCACAAGAAG--AGCCGCAGC--AAGATCCAGAGGCA 261
BSNT_02830 215 -AGAACCCTGCACCAGCTGGGAGTAAAGAAGAAGA-------AGAAGACG 256
||||||| |||.|||| .||.| ||.|| |.||.| |
BL03504 262 AAGAACCC-GCAACAGC------CAACG--GATGATATCGCCAAAACA-G 301
BSNT_02830 257 AGGAGAAAAGATCAATG--CATGGCGGAGGCTTCCGTACAATT---ATCA 301
|.|.||||| ||| ||| || |||| || |||.
BL03504 302 ATGCGAAAA-ATC-ATGCTCA--------GCTT--------TTTGCATCT 333
BSNT_02830 302 AACCTGGGAAGACAGAAGAGGTA--AGAG-CTTTTGAAGAGTTTCTGCGA 348
..|||..|| ||||...|.||| |.|| ||.||| |.||||
BL03504 334 GCCCTTAGA--ACAGGCAAAGTACCACAGCCTCTTG--------CCGCGA 373
BSNT_02830 349 TCAA--AAGG---GGAAAAGCGCGACGGGTTGAAATCTGATGGAGCTGAA 393
|.|| |||| |||..||..||.|||| ||.||.|..|.|.|
BL03504 374 TGAAAGAAGGTGTGGATGAGGACGGCGGG-------CTTATTGTACCGCA 416
BSNT_02830 394 GTGCTGATTCCTATTGATGTAATCACTAAGCCACAACAGGAACTGGAA-- 441
| |||..|| ||||.|.|..||.||.||
BL03504 417 G----GATATCT------------------CCACGAAAATAAATGAAAAA 444
BSNT_02830 442 -GACGT---TGTG-GACCTTGGCACAATGGTAAATAACGTTTCTGTTACA 486
||||| |.|| .||.||||| ||||..||| |.
BL03504 445 CGACGTCAATTTGATACGTTGGC--------AAATCTCGT--------CG 478
BSNT_02830 487 ACTTCA-TCTGGCACTTATCCA-----------------GTTCTGGAGAA 518
|..||| ||.|| ||||.| |||||.|| ||
BL03504 479 ATGTCATTCCGG----TATCAACAAACAAAGGGTCAAGGGTTCTTGA-AA 523
BSNT_02830 519 CGCTAGCACACAACTCAACTCTGTAGAAGAACTAGAGAAA---------A 559
..|||||..|.| |||.|.|..|||.|.|.||.|||.|| |
BL03504 524 AACTAGCGGATA--TCACCCCGTTAGTAAATCTTGAGGAATTAGCAGATA 571
BSNT_02830 560 ATCCAGAGTTAGCGAAACCAAAGTTTAAGAAGGTGGAGTGGAAGGTTGTA 609
.|..|||.||||.|||.||.||.|||.|.||..|..|||..|...||..|
BL03504 572 TTGAAGAATTAGAGAACCCTAAATTTGAAAACATAAAGTATAGCATTAAA 621
BSNT_02830 610 -AC-ATACCGCGGTCAATTGCCAATTTCTCAGGA--GGCTATTGACGATT 655
|| ||.|||.|.| .|||....|||||.|.|| .|| |||..|||.
BL03504 622 GACTATGCCGGGAT--TTTGGTTCTTTCTAATGATTTGC--TTGCAGATA 667
BSNT_02830 656 CAGGTGTTG-ACTTAACGGCTCTTGTAGCAAATT----ATTTGC------ 694
||...|..| |||| |||.||.|..|| |||.||
BL03504 668 CACAAGAAGCACTT--------TTGCAGTACCTTTCTAATTGGCTTGCCA 709
BSNT_02830 695 AACAGAT------TGA-ACGCAATACACG-TAATTC---ACGAATTGCTG 733
||.|| | ||| .|||||| ||| |.|||| |..||||
BL03504 710 AAAAG-TCGGCCGTGACCCGCAAT--ACGTTGATTCTTAATCAATT---- 752
BSNT_02830 734 CAGTTCTGCGCACATTTACAACGATGACAGTCTCAGGAA--CTGACGAAC 781
|| |.|||.||.|||..|..|||||.|| ||| ..|||||..
BL03504 753 -AG------GAACACTTGCAAAAACCACAGTATC--GAAGCAGGACGACA 793
BSNT_02830 782 TTAAGAAAATTCTAAATGTGTATTTAAAACAGGCTTATAAGCGTGATATT 831
||||..|.|||||.|||||..|..|..|.|.||||..||| |
BL03504 794 TTAAAGACATTCTCAATGTCAAACTTGATCCGGCTATTAA---------T 834
BSNT_02830 832 GTCGCAACT----TCTTCAGCGTTCCAAT------------TCTTAGATA 865
|.|.|.||| |..||| ||..||||| |.|||||||
BL03504 835 GCCACGACTAAAGTTGTCA-CGAACCAATCAGGATTTAACGTGTTAGATA 883
BSNT_02830 866 CGTTGAAAGA-----TAAAAACGGACAGTACATTTTACAGCAAAA---TA 907
...||||||| | |||.|..|||.|..|.||||..|| ||
BL03504 884 AACTGAAAGACGCTTT-----CGGCCGTTACCTGCTTCAGCCGAACCCTA 928
BSNT_02830 908 TTTCATCCCCATCCGGAAAAGTATTGTTTGGGATACCG--AAC--ACAGT 953
.|.|| |||.|...||||.|||||||.||.|..||| |.| .||.|
BL03504 929 -CTGAT--CCAACTAAAAAATTATTGTTCGGTAAGCCGGTATCCGTCATT 975
BSNT_02830 954 TGTAGATGATCTTGT-TTTG---------GGT-GAAAAAGATGGCGACGC 992
|.| |||.| || |||| ||| .||||| ||||
BL03504 976 TCT-GATAA----GTATTTGCCAAACGGCGGTACAAAAA-----CGAC-- 1013
BSNT_02830 993 GGT------TAT--GTTTATC---GGGGA--TTTAAAAAGGGCGGT---- 1025
| ||| .||.||| ||.|| ||.||.|| ||.||
BL03504 1014 --TCCAAAATATCCATTAATCATTGGAGACCTTAAAGAA--GCTGTCAAA 1059
BSNT_02830 1026 -TCTTTTTGCG--------AATCGATTAAAAGCTACAGCGAAATG--GGT 1064
|||||...|| |.||.|||..|| |.|| ||||| |||
BL03504 1060 CTCTTTGATCGTCAGCAATATTCCATTTTAA-CGAC----AAATGTCGGT 1104
BSNT_02830 1065 GGAAAATGAT----------CTTTATGGACAGGTCCTTTCCCTGGCGATT 1104
||.|||..|| ||.||..||.| .||||.|
BL03504 1105 GGTAAAGCATTCTACCGTAACTCTACAGATA------------TGCGAAT 1142
BSNT_02830 1105 -------CGTTTCGACGTT------------AAGAAAGCTGATGACAAAG 1135
|||...|||||| |.|.|.||||.||...|.|
BL03504 1143 CATTGAACGTGAGGACGTTGTACTTTGGGACACGGATGCTGTTGTTTACG 1192
BSNT_02830 1136 CCGGCTATTTTGTAACAATCAA---------TCAACCGACAA-------- 1168
|.| |.||||.|.|.||.|| || |||||||
BL03504 1193 CGG---AATTTGCATCTATTAAAGACGCTGTTC--CCGACAATGAAACTC 1237
BSNT_02830 1169 CTAG---------CACAGAAGATCAGTCATCGGTAGACGTGGGACAATAA 1209
|.|| ||||||||||.| |||.||.|||||.|||.|||||
BL03504 1238 CAAGTACCGGCGACACAGAAGATAA---ATCAGTTGACGTTGGAAAATAA 1284
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