Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02827 and BL03502
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_02827.1.5803.seq
# -bsequence dna-align/BL03502.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02827-BL03502.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02827-BL03502.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02827
# 2: BL03502
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1605
# Identity: 713/1605 (44.4%)
# Similarity: 713/1605 (44.4%)
# Gaps: 672/1605 (41.9%)
# Score: 1205.0
#
#
#=======================================
BSNT_02827 1 GTGGCATTCTTTCGAT-----CGTTAGATAAGCAGAGCCCAGGAGCACGA 45
||.|| || |||| ||| ||||| |||..|..|
BL03502 1 -----ATGCT----ATTAAGCCGTT---TAA--AGAGC---GGAATAAAA 33
BSNT_02827 46 GAGTTCAATGAAAT---------------------CATTCTC-------- 66
|||||||| |.|||||
BL03502 34 ------AATGAAATTGCTGAAGAGGATAGCGGTTCCCTTCTCCATCCGGT 77
BSNT_02827 67 -----GGTT---------------TGGACGGCCTGTCTTA---CACGTCT 93
|||| |||| |||.| |.|.|||
BL03502 78 TGATTGGTTCAAAAATATTTTTGCTGGA-------TCTGAAAGCGCATCT 120
BSNT_02827 94 GTAAGTGCAA---TA-----AAAAACAGC-------------GATGTGT- 121
| |||.|| || ||||||.|| |||||.|
BL03502 121 G---GTGAAAGGGTATCAACAAAAACGGCCGTTCTTCATCCGGATGTATA 167
BSNT_02827 122 --TCACTGCGATTCTTACACTATCTT-----CTGATATTGCG-----GCG 159
.|..||.||||.|| || .|||||||||| |
BL03502 168 TGCCTGTGTGATTGTT--------TTGGCGGATGATATTGCGAAACTG-- 207
BSNT_02827 160 TCTCCAATTATGGTTTCTCATAATGGTGTAGAA--GAAA---AGAACTCT 204
||.||||...|||.|||.||| .|.|| |||| |.||
BL03502 208 ---CCGATTAAACTTTTTCAGAAT----CAAAATGGAAACATACAA---- 246
BSNT_02827 205 GATCTATTCAGGCTGCTGAATGAGAAACCCAATGATTATTATTCGGGGTA 254
|||| |.|..||| |||..||..|| |||.||||
BL03502 247 --------CAGG-TTCAAAAT---AAAGTCAGCGA-TATCATTC------ 277
BSNT_02827 255 CTTTTTCAAATTCATTCTTGTGGCTAACGCACTAATGA----ATGGCCAG 300
|...||||.|| ||||| |||.|.||
BL03502 278 --TGAACAAAGTC--------------------AATGACTATATGACAAG 305
BSNT_02827 301 TCTTACGCGGAAATAGTCCG------GGATAAAGAGG----GCACGCCCT 340
..||..|.|||| .|| ||.||.| ||| ||| ||
BL03502 306 CTTTGTGTGGAA-----GCGGCTTTTGGTTACA-AGGCTTTGCA----CT 345
BSNT_02827 341 T------AGAGCT-----CATTCATTTATT----------GAACAGTGAA 369
| |.|||| |.||.|.||.|| |||..||||.
BL03502 346 TGGGGAAACAGCTACAACCTTTTACTTTTTGATAAAGACGGAAATGTGAC 395
BSNT_02827 370 GTCTATGCTGAGCA---------GCTGCAGGACCGAAACGAAATACTG-T 409
|..||| |.||.|| |..||| |||.|.|| |||||.|| |
BL03502 396 GGGTAT-CAGACCATTGGATCCGGAAGCA--ACCAACAC-AAATATTGAT 441
BSNT_02827 410 ACCGGTA--------------TTATCCGTCA------GGCGGCAAAGAAA 439
.|||.|| |..||| .|| |.|||| |||.|
BL03502 442 CCCGATAACGGGCGTGTTTGGTACTCC-ACAACGATTGACGGC--AGATA 488
BSNT_02827 440 ----GAG--TTTTGAAGCCTGAAAATGTACTGCACATTAAA----TTTTT 479
||| ||||.| ||||.|.||.|||||..||||| |.|.|
BL03502 489 CCGTGAGTTTTTTTA----TGAAGAGGTGCTGCATTTTAAAAACCTGTCT 534
BSNT_02827 480 CAGCATGGACGGAATAACGGGTATGAGTCCCCTTTCTAG-TCTTAAGCAC 528
| |.||||||||...|||....|.|||..|||| || |.||..|.||
BL03502 535 C----TTGACGGAATTGTGGGGCAAACTCCGATTTC-AGTTATTCGGGAC 579
BSNT_02827 529 GAGAT----TGAAAGCCAGGAGGCGGGGAAGCGCCTTGTCACA------- 567
.|.|| |.||| .||.|| ||.||||
BL03502 580 AATATAGGGTCAAA--------------TAGAGC--TGCCACAAAATTCA 613
BSNT_02827 568 ----GACTTTTT--CAGAAGGGGCGTCAAC--TTAAGCGGTATTGTAAAC 609
||..|||| .||||.||..||..|| || ||||.||||
BL03502 614 ACGCGAAATTTTACAAGAATGGCGGTGCACCGTT---CGGTGTTGT---- 656
BSNT_02827 610 ATGAAAAAAG-GCCATTTGTCTCCTGAGGCAAAGGACAAAATCCGTAATG 658
.|||| ||| ||| ||.| |.
BL03502 657 -----TAAAGCGCC--------------------GAC-----CCTT--TT 674
BSNT_02827 659 AATTTGAAAAAG----CAAACTCTGGCATAAAGAATCAAC----AGCGGG 700
|..|.||||||| ||||.||| ||.|||| .|| ||||||
BL03502 675 AGATCGAAAAAGTAAACAAATTCT----TAGAGAA--GACTGGGAGCGGG 718
BSNT_02827 701 T---TGTTGTGC--TCGATGAAAACATGGAGTTT----AGCCAG------ 735
| ||..|.|| ||.|| ||.||||| .|||.|
BL03502 719 TGAATGCGGGGCAGTCTAT-------TGCAGTTTTAGACGCCGGGCTTGA 761
BSNT_02827 736 TTA-------GAAATCA---ATACGAAAG-TGC--------TTGAGGTCG 766
||| |.||.|| .||.||||| ||| |||| .|||
BL03502 762 TTATTCACAGGTAACCATGCCTATGAAAGATGCCCAATTTATTGA-ATCG 810
BSNT_02827 767 -TGAACAACTACACGCATTCAACGAAACAGATAGC--CAAAGTGTTCGGG 813
|||| |.|.|.||..| |||||||.|| |.|..|.|..||
BL03502 811 ATGAA-------ATGGAATCGCC--AACAGATTGCATCGATTTATAAGG- 850
BSNT_02827 814 TTGCCGGCGCACA---------AGCTGGGCATTGAGCAA----GTC-AAT 849
||||..||||.| ||||||.|| |.|||| .|| |||
BL03502 851 -TGCCTCCGCATAAAATAGGTGAGCTGGACA--GGGCAACATTTTCAAAT 897
BSNT_02827 850 ACATCGCTGGAACAAGCTAACCTGGACTATCTGACAAATACATTAT---C 896
| |.||.||| |.|.||| ||.||||| .
BL03502 898 A------TTGAGCAA-CAATCCT---------------TAGATTATGTCA 925
BSNT_02827 897 AAACTATTTTACGGCCATTGCCTCAGA---ACTGAA-------------- 929
||||.|.|||||.||||.| |.|||.| |.||||
BL03502 926 AAACCACTTTACAGCCAAT-CGTCACAAATATTGAACAAGAGTTAAACGA 974
BSNT_02827 930 ------TTTCA---AAATGCTGCCG---------TA-TCCTTTAAACCTA 960
|||.| |.|.||.||.| || |.|||||||..||
BL03502 975 TAAGGTTTTGACAGAGAAGCAGCAGGGAGCTGGCTATTACTTTAAATTTA 1024
BSNT_02827 961 CAGCTGAAATTTCA---ATTCGACACACGGCGATTTAGAGAAACAGACGC 1007
|.|||.|| ||| .|||| |||.||| ||.||...|||.
BL03502 1025 -ACCTGGAA--TCAGAGCTTCG-----CGGGGAT----AGTAAATCACGT 1062
BSNT_02827 1008 G-----------AAAA-----CAAAGCGTGAGAACGTTATTGCCTT--GC 1039
| |||| ||||||||..| .||||| ||
BL03502 1063 GCTGAATTTTATAAAACGATGCAAAGCGTAGG--------CGCCTTTAGC 1104
BSNT_02827 1040 TGCAAAACGGTATTTTCTCTCTCAATA--ATGCCCTGGCTGAGTATGGTT 1087
..|||.|| |.|||| ||||.| |.|.|.||.|.| ||||
BL03502 1105 GTCAATAC----TATTCT---TCAAAAAGAGGACATGACAG-GTAT---- 1142
BSNT_02827 1088 ACGAGCCAATACCAAACGGGGACAAC--CGTTACATGAG-----TTTAAA 1130
||||||.|.| || ||||| |..|||
BL03502 1143 ----------------CGGGGAGATCGGCG----ATGAGCATTATGGAAA 1172
BSNT_02827 1131 CTATGTGAACATTG-----------ATTTGATGGACGAGATTCAGAA--- 1166
|| |.|||.||| ||| |||.|.|||..|| ||
BL03502 1173 CT---TAAACCTTGTTCCCCTTTCAATT--ATGAAAGAGTATC--AACTT 1215
BSNT_02827 1167 AGCAAAAGCAAAGAGCCTGCCGATCTCGTCAGCAGGTGAAGGAGGTGAGG 1216
|||||...||||..|.||.|..|||.|.|.| ||||.|||||.|
BL03502 1216 AGCAAGGTCAAACGGTCTTCAAATCGCCTGA-------AAGGGGGTGATG 1258
BSNT_02827 1217 GGAATGTCTAA--------------------------------------- 1227
|.||.| .||
BL03502 1259 GCAACG--GAACAGAAGAAGAAAAACAAGTATTGGAACATGAAGGTTCTG 1306
BSNT_02827 1227 ----- 1227
BL03502 1307 AATGA 1311
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