Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02825 and BL03501

See Amino acid alignment / Visit BSNT_02825 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence dna-align/BSNT_02825.1.5803.seq
#    -bsequence dna-align/BL03501.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02825-BL03501.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02825-BL03501.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02825
# 2: BL03501
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2085
# Identity:    1028/2085 (49.3%)
# Similarity:  1028/2085 (49.3%)
# Gaps:         726/2085 (34.8%)
# Score: 1993.5
# 
#
#=======================================

BSNT_02825         1 ATG---ACGATTGAACATCTTGACCCCGGCACGCTTTA-------CGCGA     40
                     |||   ||.|||.||||..||         |.|.||.|       |||||
BL03501            1 ATGAATACAATTAAACAGTTT---------ATGATTGATTACTCGCGCGA     41

BSNT_02825        41 AAAAGGTTGTCA----GCGGAGAAATAACGGCATGCAAGAAAGTCATAAA     86
                            |||.|    | ||.||.||....||.|||  ||||..||||.|
BL03501           42 -------TGTGATATCG-GGCGAGATTGTTGCGTGC--GAAAAGCATATA     81

BSNT_02825        87 --AGCCTGTCAGCG----TCACCTG--------AGAGATTTGGA--AAGA    120
                       .||.||||||||    |.|..||        |||||  .|||  ||||
BL03501           82 TGGGCTTGTCAGCGGTTTTTAAATGATATTAAAAGAGA--AGGAACAAGA    129

BSNT_02825       121 GCAGCTGACCCTTCTTA------TGAATATGAATACAGACCAGAAAAGGC    164
                     | ||.|     |.||||      |||..||||           |||||.|
BL03501          130 G-AGTT-----TCCTTACGTGTTTGACGATGA-----------AAAAGCC    162

BSNT_02825       165 AAAAAAGGTCATTAAG-TTTCTTGA---GATGCTGC----CAGATATATC    206
                           .|||     | ||||||.|   ||||..||    ||.|.||| |
BL03501          163 ------CGTC-----GCTTTCTTTACTGGATGACGCAATTCAAACATA-C    200

BSNT_02825       207 AACTGGAAAGCCCACAAAGCTGG------CTTTGT-----------TTCA    239
                     ||    ||.|.||| ..||||||      |.|.||           ||||
BL03501          201 AA----AAGGGCCA-TTAGCTGGTGAAAACATAGTTCCAGATCGTATTCA    245

BSNT_02825       240 AAAGTTCATTGT--GTACATGCTCTATGCTTGGAGGAATAAAGAAACCGG    287
                     ||..||.|||.|  ||| ||| |.||||..||||...|||||||.||.||
BL03501          246 AATCTTTATTTTCGGTA-ATG-TTTATGGCTGGATTCATAAAGATACAGG    293

BSNT_02825       288 CTTTCGGCGATTCACCAAAGCGTATATAAGCATGGCGAGAAAG---GGCG    334
                     .|..||.||.||.||.||||.||||       ||||     ||   |||.
BL03501          294 ATACCGCCGTTTTACAAAAGTGTAT-------TGGC-----AGGTTGGCC    331

BSNT_02825       335 GTAAATCTG----TACT-----TGTAGCGGGGCTATCATTGTATG-AGCT    374
                     |||||..||    .|||     |.||||..|..|..|||..|||| ||| 
BL03501          332 GTAAAAATGCAAAGACTCAGAGTCTAGCATGTGTTGCATCCTATGAAGC-    380

BSNT_02825       375 GATTTACGGCGA------AGCACCTAA-GTTTGACAGGCAAATTTAT---    414
                         .|.|||.|      ||.|   || ||.||      ||.|||||   
BL03501          381 ----AATGGCAAACAATGAGAA---AATGTCTG------AAGTTTATATA    417

BSNT_02825       415 ---GCGACAGCTAATTCAAGA--GGCCAGGCGAAAACCGTCTTTAAAATG    459
                        ||.|||        ||||  |..|||||            |.|||| 
BL03501          418 GGGGCAACA--------AAGACGGAGCAGGC------------TCAAAT-    446

BSNT_02825       460 ATTTCGATGCAGCTT--AAGAAGATACGAAG--TAAAT---------CGA    496
                           |||    ||  |||.||||| .|||  .||||         |||
BL03501          447 ------ATG----TTGGAAGGAGATA-AAAGCCCAAATAGAAGGGTGCGA    485

BSNT_02825       497 AATT---------CATGAGGAAATGGACAAAGATT--ATA----------    525
                     |.||         |.||||.|||...|| |.||||  |||          
BL03501          486 ACTTCTAAACAAACCTGAGCAAAAATAC-AGGATTGCATACAGCACCATT    534

BSNT_02825       526 -------CAAAATGAAATCCGGTACC-TGAAAGATGACTGCGTCATTATG    567
                            |||||..||||.|  .||| |.||||                 
BL03501          535 GAACACCCAAAAACAAATTC--AACCATCAAAG-----------------    565

BSNT_02825       568 CCTTTATCAAGGGAT--ACTGATAACCTG-GACAGTTTGAACGTTCTTAT    614
                      |||||||.|..|||  |..||..|||.| |||.|.||.|||...| .||
BL03501          566 -CTTTATCTAAAGATGCAGGGAAGACCGGTGACGGATTTAACCCGC-AAT    613

BSNT_02825       615 -CGGAATTCTTGACGAGTATCACACAGCTTCCAACACAAAA---------    654
                      |||.||..|.||.||.|||||   .|||     ||.||||         
BL03501          614 GCGGCATAATCGATGAATATCA---TGCT-----CATAAAACGTCAGAGA    655

BSNT_02825       655 ---ATGATGGAAGTTCTAGAGTC-------TTCCCAAGGTCAGCAG--GA    692
                        |.|||    .|.||.|||||       ..|.||||..| ||||  ||
BL03501          656 TTTACGAT----ATCCTGGAGTCGGGGATGGGCGCAAGAAC-GCAGCCGA    700

BSNT_02825       693 CCAGGGCCTTATCTTAATCATTAGTACAGCCG-----GCTTTAAGCTGAA    737
                     .||.||        |.||.||.|..|||||.|     |..||||.|  ||
BL03501          701 TCATGG--------TTATTATCACGACAGCGGGGCACGAGTTAAAC--AA    740

BSNT_02825       738 T--GGCC--CCATGTATTCGCAGGAGTATCCTTATGTTGATGA--TATTC    781
                     |  ||||  .|.|||       |||||||..|||||||  |.|  |.|||
BL03501          741 TCCGGCCTATCGTGT-------GGAGTATGATTATGTT--TCACGTCTTC    781

BSNT_02825       782 T-----------AAGTGGTCGTAAGGAAAACGAAAACTATTTTGCGATTG    820
                     |           ||||.|     ||..|||.|||.|.|||||||..||.|
BL03501          782 TCGATCCAAACAAAGTAG-----AGACAAATGAACAGTATTTTGTCATGG    826

BSNT_02825       821 TCTATGAACAGGATGACGAAGAGGAAATTTACGACGAAAGCACTTGGATA    870
                     |..|.|||...|||.|.||.||.||.||..|.||.|||||.|.|||||| 
BL03501          827 TGAACGAAATAGATAAAGACGATGACATAAAGGATGAAAGGAATTGGAT-    875

BSNT_02825       871 AAAAGC-AATCCACTA---------CTTGAGGT--GGAGGGGCTACAAA-    907
                     |||.|| |||||..||         |.|||.||  |||      |.||| 
BL03501          876 AAAGGCTAATCCGATATTAGCTTCTCATGAAGTTGGGA------AAAAAT    919

BSNT_02825       908 -------AGAAAATCTTGAAAAACCTCCG------CAAGAAA--CTGAAG    942
                            |||...||||||||...|||.|      |..||||  .|||.|
BL03501          920 ATTTGCGAGATCGTCTTGAAATGGCTCTGGCTGTTCCTGAAAAGATGAGG    969

BSNT_02825       943 GAGGCTCTTGATAAAGATGATCTAAACGGTACACTCGTAAAAAACTTTAA    992
                     || ..||.|||..||||  ||.|.||.|.|    |.|        .||||
BL03501          970 GA-TTTCCTGACCAAGA--ATATGAATGTT----TGG--------GTTAA   1004

BSNT_02825       993 TAT----------------ATGGCAGTCTGCTTCCTCTGAAAGCTTTATC   1026
                     |||                ||||           .|.||.|.||||    
BL03501         1005 TATGCGCGACGGTGGATACATGG-----------ATATGCAGGCTT----   1039

BSNT_02825      1027 AACGGGAACGATTGGAAAAAGCGCGG-TGTGGAT--GTTGCGCCTGACAT   1073
                         ||||.||||         |||| |.| |||  |||  .||||| .|
BL03501         1040 ----GGAAGGATT---------GCGGATCT-GATCAGTT--CCCTGA-TT   1072

BSNT_02825      1074 TA-CAGGGAAGCCG---GT-TTACATAGGGATTGACTTATC---ACGAAC   1115
                     || |.|    ||||   || .||..|||||||||||||.||   |||||.
BL03501         1073 TATCCG----GCCGTGAGTGCTATGTAGGGATTGACTTGTCAAAACGAAT   1118

BSNT_02825      1116 AGA--TGATTTATCAGCCCTTGGCTTCATTTAT----CCGTTAGAGGATG   1159
                     .||  |||     ||||   ||.| ||.|||||    ||.||   |||| 
BL03501         1119 TGACCTGA-----CAGC---TGTC-TCGTTTATTTTCCCATT---GGAT-   1155

BSNT_02825      1160 AAAATGAGACATTTTATGTGGACAGTCACTCGTTTGTTG---GAACAAAA   1206
                       ||||.||..|||..||||||.|||||| .||||..||   |||     
BL03501         1156 --AATGGGAGCTTTGCTGTGGATAGTCAC-GGTTTTATGCCTGAA-----   1197

BSNT_02825      1207 GGTGGACTGGATA----ATAAAATTGAGCG-----TGACAAACTGGACTA   1247
                              ||||    .||    ||||||     .||||.|      ||
BL03501         1198 ---------GATACCTTCTA----TGAGCGCATGAAGACAGA------TA   1228

BSNT_02825      1248 TCGTACTCTCGCGAAAGCCGGATACTGCACAATTACGGA--CAAAAAATC   1295
                     .|||            ||||.||      .|.||..|||  .||||.|.|
BL03501         1229 ACGT------------GCCGTAT------GATTTGTGGAAGGAAAAGAAC   1260

BSNT_02825      1296 CGGAATCATTAATCTGCA--------GCAGGTTGTGGATTA----TATGA   1333
                     .||     ||||.|..||        || .|||||.|||||    ||| |
BL03501         1261 TGG-----TTAACCGTCACCGACGGCGC-TGTTGTCGATTATGACTAT-A   1303

BSNT_02825      1334 TCA---ATCATATTAAAGAATTTGATTTACAAG-TAAAGG-----GAATC   1374
                     |||   .|.|.||||||.||.|.||   ..||| .|||||     |.|||
BL03501         1304 TCAGGGCTTACATTAAAAAAATGGA---GAAAGAGAAAGGCTGGCGGATC   1350

BSNT_02825      1375 -------TT--CTTTGACCCTTACAA---TATCTCTTTATTCTTAAATGA   1412
                            ||  ||.||||||.||.||   || |.|..|.|.|..||  .|
BL03501         1351 AAAGAAATTGCCTATGACCCGTATAATGCTA-CACAGTTTGCCCAA--CA   1397

BSNT_02825      1413 AATTGAGAAATATGGCTATGAAGATGTGCTGATTGAAGTTCGTCAAGGTC   1462
                     .||.|||..|.|.||      |.|||||.||||||||.||||.||.|||.
BL03501         1398 GATGGAGGCAGACGG------ATATGTGATGATTGAAATTCGGCAGGGTG   1441

BSNT_02825      1463 CTCGCACATTATCTGAACCAACAAAAGATTTTCGTTTGAA----TGTATT   1508
                     .|..||||.|.||.||.||.||.|||||.||.||  .|||    ||.|  
BL03501         1442 TTGCCACACTTTCAGAGCCTACGAAAGACTTCCG--CGAAAAAGTGAA--   1487

BSNT_02825      1509 CGACGGAAAA-ATCATACACAGCAAGAAC------CCATTACTTGATACG   1551
                      |.||.|||| |||||.||.|..||.|||      |  |.|||||    |
BL03501         1488 -GGCGAAAAAGATCATCCATAATAAAAACGATCTGC--TGACTTG----G   1530

BSNT_02825      1552 GCGATGCACAATGCAATGC--TGAAAAAAGTGAAT---------------   1584
                     ||.|||     .|.||.||  |.|.|||||||.||               
BL03501         1531 GCTATG-----GGGAACGCCGTTACAAAAGTGGATGCCCAGGAAAATATA   1575

BSNT_02825      1585 ------GATACGATTCAAATTGACAAAGCGCTATACAGGGAAAAGATTGA   1628
                           ||||.| |.|||.|..|||.|.||              ||||||
BL03501         1576 ATGCTGGATAAG-TCCAAGTCCACACAACG--------------GATTGA   1610

BSNT_02825      1629 CCCTGCAGCGGCAATGATGAACGCACACACGGGCGCTATGTAC---CATT   1675
                     |||.|||||.||..|.||.||.||||           ||||.|   |.|.
BL03501         1611 CCCGGCAGCCGCGCTTATTAATGCAC-----------ATGTTCGGGCTTC   1649

BSNT_02825      1676 ACAAACAAGAGGAATTTGAT------------TGGAACTCTTATTACGAA   1713
                     |||||          |||||            |..|||.|||||      
BL03501         1650 ACAAA----------TTGATACGGCGATCGACTTAAACGCTTAT------   1683

BSNT_02825      1714 AGCGAAGAATTTACTC-------TTTAG-------   1734
                             |||.|.||       ||.||       
BL03501         1684 --------ATTCAGTCTGGATCTTTCAGTCTGTAG   1710


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