Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02825 and BL03501
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_02825.1.5803.seq
# -bsequence dna-align/BL03501.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02825-BL03501.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02825-BL03501.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02825
# 2: BL03501
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2085
# Identity: 1028/2085 (49.3%)
# Similarity: 1028/2085 (49.3%)
# Gaps: 726/2085 (34.8%)
# Score: 1993.5
#
#
#=======================================
BSNT_02825 1 ATG---ACGATTGAACATCTTGACCCCGGCACGCTTTA-------CGCGA 40
||| ||.|||.||||..|| |.|.||.| |||||
BL03501 1 ATGAATACAATTAAACAGTTT---------ATGATTGATTACTCGCGCGA 41
BSNT_02825 41 AAAAGGTTGTCA----GCGGAGAAATAACGGCATGCAAGAAAGTCATAAA 86
|||.| | ||.||.||....||.||| ||||..||||.|
BL03501 42 -------TGTGATATCG-GGCGAGATTGTTGCGTGC--GAAAAGCATATA 81
BSNT_02825 87 --AGCCTGTCAGCG----TCACCTG--------AGAGATTTGGA--AAGA 120
.||.|||||||| |.|..|| ||||| .||| ||||
BL03501 82 TGGGCTTGTCAGCGGTTTTTAAATGATATTAAAAGAGA--AGGAACAAGA 129
BSNT_02825 121 GCAGCTGACCCTTCTTA------TGAATATGAATACAGACCAGAAAAGGC 164
| ||.| |.|||| |||..|||| |||||.|
BL03501 130 G-AGTT-----TCCTTACGTGTTTGACGATGA-----------AAAAGCC 162
BSNT_02825 165 AAAAAAGGTCATTAAG-TTTCTTGA---GATGCTGC----CAGATATATC 206
.||| | ||||||.| ||||..|| ||.|.||| |
BL03501 163 ------CGTC-----GCTTTCTTTACTGGATGACGCAATTCAAACATA-C 200
BSNT_02825 207 AACTGGAAAGCCCACAAAGCTGG------CTTTGT-----------TTCA 239
|| ||.|.||| ..|||||| |.|.|| ||||
BL03501 201 AA----AAGGGCCA-TTAGCTGGTGAAAACATAGTTCCAGATCGTATTCA 245
BSNT_02825 240 AAAGTTCATTGT--GTACATGCTCTATGCTTGGAGGAATAAAGAAACCGG 287
||..||.|||.| ||| ||| |.||||..||||...|||||||.||.||
BL03501 246 AATCTTTATTTTCGGTA-ATG-TTTATGGCTGGATTCATAAAGATACAGG 293
BSNT_02825 288 CTTTCGGCGATTCACCAAAGCGTATATAAGCATGGCGAGAAAG---GGCG 334
.|..||.||.||.||.||||.|||| |||| || |||.
BL03501 294 ATACCGCCGTTTTACAAAAGTGTAT-------TGGC-----AGGTTGGCC 331
BSNT_02825 335 GTAAATCTG----TACT-----TGTAGCGGGGCTATCATTGTATG-AGCT 374
|||||..|| .||| |.||||..|..|..|||..|||| |||
BL03501 332 GTAAAAATGCAAAGACTCAGAGTCTAGCATGTGTTGCATCCTATGAAGC- 380
BSNT_02825 375 GATTTACGGCGA------AGCACCTAA-GTTTGACAGGCAAATTTAT--- 414
.|.|||.| ||.| || ||.|| ||.|||||
BL03501 381 ----AATGGCAAACAATGAGAA---AATGTCTG------AAGTTTATATA 417
BSNT_02825 415 ---GCGACAGCTAATTCAAGA--GGCCAGGCGAAAACCGTCTTTAAAATG 459
||.||| |||| |..||||| |.||||
BL03501 418 GGGGCAACA--------AAGACGGAGCAGGC------------TCAAAT- 446
BSNT_02825 460 ATTTCGATGCAGCTT--AAGAAGATACGAAG--TAAAT---------CGA 496
||| || |||.||||| .||| .|||| |||
BL03501 447 ------ATG----TTGGAAGGAGATA-AAAGCCCAAATAGAAGGGTGCGA 485
BSNT_02825 497 AATT---------CATGAGGAAATGGACAAAGATT--ATA---------- 525
|.|| |.||||.|||...|| |.|||| |||
BL03501 486 ACTTCTAAACAAACCTGAGCAAAAATAC-AGGATTGCATACAGCACCATT 534
BSNT_02825 526 -------CAAAATGAAATCCGGTACC-TGAAAGATGACTGCGTCATTATG 567
|||||..||||.| .||| |.||||
BL03501 535 GAACACCCAAAAACAAATTC--AACCATCAAAG----------------- 565
BSNT_02825 568 CCTTTATCAAGGGAT--ACTGATAACCTG-GACAGTTTGAACGTTCTTAT 614
|||||||.|..||| |..||..|||.| |||.|.||.|||...| .||
BL03501 566 -CTTTATCTAAAGATGCAGGGAAGACCGGTGACGGATTTAACCCGC-AAT 613
BSNT_02825 615 -CGGAATTCTTGACGAGTATCACACAGCTTCCAACACAAAA--------- 654
|||.||..|.||.||.||||| .||| ||.||||
BL03501 614 GCGGCATAATCGATGAATATCA---TGCT-----CATAAAACGTCAGAGA 655
BSNT_02825 655 ---ATGATGGAAGTTCTAGAGTC-------TTCCCAAGGTCAGCAG--GA 692
|.||| .|.||.||||| ..|.||||..| |||| ||
BL03501 656 TTTACGAT----ATCCTGGAGTCGGGGATGGGCGCAAGAAC-GCAGCCGA 700
BSNT_02825 693 CCAGGGCCTTATCTTAATCATTAGTACAGCCG-----GCTTTAAGCTGAA 737
.||.|| |.||.||.|..|||||.| |..||||.| ||
BL03501 701 TCATGG--------TTATTATCACGACAGCGGGGCACGAGTTAAAC--AA 740
BSNT_02825 738 T--GGCC--CCATGTATTCGCAGGAGTATCCTTATGTTGATGA--TATTC 781
| |||| .|.||| |||||||..||||||| |.| |.|||
BL03501 741 TCCGGCCTATCGTGT-------GGAGTATGATTATGTT--TCACGTCTTC 781
BSNT_02825 782 T-----------AAGTGGTCGTAAGGAAAACGAAAACTATTTTGCGATTG 820
| ||||.| ||..|||.|||.|.|||||||..||.|
BL03501 782 TCGATCCAAACAAAGTAG-----AGACAAATGAACAGTATTTTGTCATGG 826
BSNT_02825 821 TCTATGAACAGGATGACGAAGAGGAAATTTACGACGAAAGCACTTGGATA 870
|..|.|||...|||.|.||.||.||.||..|.||.|||||.|.||||||
BL03501 827 TGAACGAAATAGATAAAGACGATGACATAAAGGATGAAAGGAATTGGAT- 875
BSNT_02825 871 AAAAGC-AATCCACTA---------CTTGAGGT--GGAGGGGCTACAAA- 907
|||.|| |||||..|| |.|||.|| ||| |.|||
BL03501 876 AAAGGCTAATCCGATATTAGCTTCTCATGAAGTTGGGA------AAAAAT 919
BSNT_02825 908 -------AGAAAATCTTGAAAAACCTCCG------CAAGAAA--CTGAAG 942
|||...||||||||...|||.| |..|||| .|||.|
BL03501 920 ATTTGCGAGATCGTCTTGAAATGGCTCTGGCTGTTCCTGAAAAGATGAGG 969
BSNT_02825 943 GAGGCTCTTGATAAAGATGATCTAAACGGTACACTCGTAAAAAACTTTAA 992
|| ..||.|||..|||| ||.|.||.|.| |.| .||||
BL03501 970 GA-TTTCCTGACCAAGA--ATATGAATGTT----TGG--------GTTAA 1004
BSNT_02825 993 TAT----------------ATGGCAGTCTGCTTCCTCTGAAAGCTTTATC 1026
||| |||| .|.||.|.||||
BL03501 1005 TATGCGCGACGGTGGATACATGG-----------ATATGCAGGCTT---- 1039
BSNT_02825 1027 AACGGGAACGATTGGAAAAAGCGCGG-TGTGGAT--GTTGCGCCTGACAT 1073
||||.|||| |||| |.| ||| ||| .||||| .|
BL03501 1040 ----GGAAGGATT---------GCGGATCT-GATCAGTT--CCCTGA-TT 1072
BSNT_02825 1074 TA-CAGGGAAGCCG---GT-TTACATAGGGATTGACTTATC---ACGAAC 1115
|| |.| |||| || .||..|||||||||||||.|| |||||.
BL03501 1073 TATCCG----GCCGTGAGTGCTATGTAGGGATTGACTTGTCAAAACGAAT 1118
BSNT_02825 1116 AGA--TGATTTATCAGCCCTTGGCTTCATTTAT----CCGTTAGAGGATG 1159
.|| ||| |||| ||.| ||.||||| ||.|| ||||
BL03501 1119 TGACCTGA-----CAGC---TGTC-TCGTTTATTTTCCCATT---GGAT- 1155
BSNT_02825 1160 AAAATGAGACATTTTATGTGGACAGTCACTCGTTTGTTG---GAACAAAA 1206
||||.||..|||..||||||.|||||| .||||..|| |||
BL03501 1156 --AATGGGAGCTTTGCTGTGGATAGTCAC-GGTTTTATGCCTGAA----- 1197
BSNT_02825 1207 GGTGGACTGGATA----ATAAAATTGAGCG-----TGACAAACTGGACTA 1247
|||| .|| |||||| .||||.| ||
BL03501 1198 ---------GATACCTTCTA----TGAGCGCATGAAGACAGA------TA 1228
BSNT_02825 1248 TCGTACTCTCGCGAAAGCCGGATACTGCACAATTACGGA--CAAAAAATC 1295
.||| ||||.|| .|.||..||| .||||.|.|
BL03501 1229 ACGT------------GCCGTAT------GATTTGTGGAAGGAAAAGAAC 1260
BSNT_02825 1296 CGGAATCATTAATCTGCA--------GCAGGTTGTGGATTA----TATGA 1333
.|| ||||.|..|| || .|||||.||||| ||| |
BL03501 1261 TGG-----TTAACCGTCACCGACGGCGC-TGTTGTCGATTATGACTAT-A 1303
BSNT_02825 1334 TCA---ATCATATTAAAGAATTTGATTTACAAG-TAAAGG-----GAATC 1374
||| .|.|.||||||.||.|.|| ..||| .||||| |.|||
BL03501 1304 TCAGGGCTTACATTAAAAAAATGGA---GAAAGAGAAAGGCTGGCGGATC 1350
BSNT_02825 1375 -------TT--CTTTGACCCTTACAA---TATCTCTTTATTCTTAAATGA 1412
|| ||.||||||.||.|| || |.|..|.|.|..|| .|
BL03501 1351 AAAGAAATTGCCTATGACCCGTATAATGCTA-CACAGTTTGCCCAA--CA 1397
BSNT_02825 1413 AATTGAGAAATATGGCTATGAAGATGTGCTGATTGAAGTTCGTCAAGGTC 1462
.||.|||..|.|.|| |.|||||.||||||||.||||.||.|||.
BL03501 1398 GATGGAGGCAGACGG------ATATGTGATGATTGAAATTCGGCAGGGTG 1441
BSNT_02825 1463 CTCGCACATTATCTGAACCAACAAAAGATTTTCGTTTGAA----TGTATT 1508
.|..||||.|.||.||.||.||.|||||.||.|| .||| ||.|
BL03501 1442 TTGCCACACTTTCAGAGCCTACGAAAGACTTCCG--CGAAAAAGTGAA-- 1487
BSNT_02825 1509 CGACGGAAAA-ATCATACACAGCAAGAAC------CCATTACTTGATACG 1551
|.||.|||| |||||.||.|..||.||| | |.||||| |
BL03501 1488 -GGCGAAAAAGATCATCCATAATAAAAACGATCTGC--TGACTTG----G 1530
BSNT_02825 1552 GCGATGCACAATGCAATGC--TGAAAAAAGTGAAT--------------- 1584
||.||| .|.||.|| |.|.|||||||.||
BL03501 1531 GCTATG-----GGGAACGCCGTTACAAAAGTGGATGCCCAGGAAAATATA 1575
BSNT_02825 1585 ------GATACGATTCAAATTGACAAAGCGCTATACAGGGAAAAGATTGA 1628
||||.| |.|||.|..|||.|.|| ||||||
BL03501 1576 ATGCTGGATAAG-TCCAAGTCCACACAACG--------------GATTGA 1610
BSNT_02825 1629 CCCTGCAGCGGCAATGATGAACGCACACACGGGCGCTATGTAC---CATT 1675
|||.|||||.||..|.||.||.|||| ||||.| |.|.
BL03501 1611 CCCGGCAGCCGCGCTTATTAATGCAC-----------ATGTTCGGGCTTC 1649
BSNT_02825 1676 ACAAACAAGAGGAATTTGAT------------TGGAACTCTTATTACGAA 1713
||||| ||||| |..|||.|||||
BL03501 1650 ACAAA----------TTGATACGGCGATCGACTTAAACGCTTAT------ 1683
BSNT_02825 1714 AGCGAAGAATTTACTC-------TTTAG------- 1734
|||.|.|| ||.||
BL03501 1684 --------ATTCAGTCTGGATCTTTCAGTCTGTAG 1710
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