Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05092 and BL03482
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:13
# Commandline: needle
# -asequence dna-align/BSNT_05092___rnrrnr.1.5803.seq
# -bsequence dna-align/BL03482___rnr.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05092___rnrrnr-BL03482___rnr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05092___rnrrnr-BL03482___rnr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05092___rnrrnr
# 2: BL03482___rnr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2365
# Identity: 1797/2365 (76.0%)
# Similarity: 1797/2365 (76.0%)
# Gaps: 86/2365 ( 3.6%)
# Score: 6767.0
#
#
#=======================================
BSNT_05092___ 1 ATGGAAAAAGAAGCATTTATGGAAAAGCTTCTCTCGTTTATGAAGGAAGA 50
.||||||||||||.|||||||||.|||||||||||.||||||||.|||||
BL03482___rnr 1 GTGGAAAAAGAAGAATTTATGGATAAGCTTCTCTCCTTTATGAAAGAAGA 50
BSNT_05092___ 51 GGCGTACAAGCCTCTGACCGTTCAGGAACTTGAGGAGATGTTAAATATTA 100
.||.||.||.|||||.||.|||||||||||.||.||||||.|..|.||.|
BL03482___rnr 51 AGCATATAAACCTCTTACAGTTCAGGAACTGGAAGAGATGCTGGAAATCA 100
BSNT_05092___ 101 CGGAAGCCGAGGAGTTTAAAGAGCTCGTCAAAGCGTTAGTCGCCTTGGAA 150
|.||..|.||.||.|..|||||||||||||||||..|.||..||.|.|||
BL03482___rnr 101 CCGATTCGGACGAATACAAAGAGCTCGTCAAAGCTCTTGTAACCCTTGAA 150
BSNT_05092___ 151 GAAAAAGGGCTTATCGTACGGACGAGAAGCGACCGCTACGGCATTCCGGA 200
||||||||||||.||||..|.|||||||||.||||||||||..|.||.||
BL03482___rnr 151 GAAAAAGGGCTTGTCGTCAGAACGAGAAGCAACCGCTACGGTTTGCCCGA 200
BSNT_05092___ 201 GAAGATGAATTTAATAAAAGGAAAGATTTCAGCCCATGCGAAAGGATTCG 250
.||.||||||.|.||.|||||.|||.|.||.||.||.||||||||.||||
BL03482___rnr 201 AAAAATGAATCTGATCAAAGGGAAGGTGTCGGCGCACGCGAAAGGCTTCG 250
BSNT_05092___ 251 CCTTTTTGCTGCCTGAGGATACGTCG-TTAAGTGATGTGTTTATTCCGCC 299
|.|||.|.||.||.||.||..|.||| ||.| .|||||.||.||||||||
BL03482___rnr 251 CGTTTGTCCTTCCCGAAGACTCCTCGCTTGA-CGATGTCTTCATTCCGCC 299
BSNT_05092___ 300 TAATGAGCTAAATACGGCAATGAACGGCGATATCGTCATGGTGCGTCTGA 349
...||||||.||.||.|||||||||||.||||.|||..|.||.||.||||
BL03482___rnr 300 GTCTGAGCTGAACACAGCAATGAACGGAGATACCGTGCTCGTCCGCCTGA 349
BSNT_05092___ 350 ACTCACAGTCAAGCGGCTCCAGGCAGGAAGGAACCGTCATACGGATTTTA 399
.|.||.|.||..||||..|.|...|.|||||..||.||||.||.||
BL03482___rnr 350 GCACAGAATCCGGCGGTACAAAAAAAGAAGGGGCCATCATCCGCAT---- 395
BSNT_05092___ 400 GAAAGAGCG----ATTCAGCGGGTTGTCGGCACGTATACAGAAACGAGAA 445
.|..||||| ||||||..|.||||||||||.||.|||||.||||.||
BL03482___rnr 396 CATCGAGCGCAACATTCAGAAGATTGTCGGCACATACACAGAGACGAAAA 445
BSNT_05092___ 446 ACTTCGGCTTTGTCATTCCGGACGACAAAAAAATCACGAGTGACATCTTC 495
||||||||||.||||||||.|||||.|||||||||||||.|||||||||.
BL03482___rnr 446 ACTTCGGCTTCGTCATTCCCGACGATAAAAAAATCACGAATGACATCTTT 495
BSNT_05092___ 496 ATTCCGAAAAATGGGAAAAATGGAGCTGCGGAAGGGCATAAGGTTGTTGT 545
||||||||..|.|..|||||.||.||.|..||.||.|||||.||.||.||
BL03482___rnr 496 ATTCCGAAGCACGCCAAAAACGGCGCCGTCGAGGGTCATAAAGTCGTCGT 545
BSNT_05092___ 546 CAAGCTGACGAGCTATCCTGAAGGCCGCATGAACGCAGAGGGTGAGG--- 592
|...|||||.|||||||||||||||||.||||..|||||.||.||.|
BL03482___rnr 546 CCGCCTGACAAGCTATCCTGAAGGCCGGATGAGTGCAGAAGGGGAAGTCA 595
BSNT_05092___ 593 TTGAAACCATTCTCGGCCACAAAAACGACCCGGGCATTGATATTTTATCA 642
|.|| .||||||||.||.||||||||.||.|||||.||.|||.|.||.
BL03482___rnr 596 TCGA---GATTCTCGGTCATAAAAACGATCCCGGCATCGACATTCTTTCG 642
BSNT_05092___ 643 GTCATTCATAAGCACGGCCTGCCGGGAGAATTTCCAGCTGACGCGATGGA 692
.|.|||||||||||||||||.||||||||.|||||.|||||.||||||||
BL03482___rnr 643 ATTATTCATAAGCACGGCCTCCCGGGAGACTTTCCGGCTGAGGCGATGGA 692
BSNT_05092___ 693 ACAGG-CATCAAGTACGCCTGACACGATTGATGAAAAAGATCTGAAAGAC 741
||||| |..||| |||||||||.||.||.|||||.||||||||..|||.|
BL03482___rnr 693 ACAGGCCGGCAA-TACGCCTGATACAATCGATGAGAAAGATCTTGAAGGC 741
BSNT_05092___ 742 CGCCGTGATCTCCGTGACCAGGTGATTGTCACCATTGATGGTGCGGATGC 791
.|.||.|||||.||.||.||...|||.|||||.||.||.||.||.|||||
BL03482___rnr 742 AGACGGGATCTGCGCGATCAAACGATCGTCACGATCGACGGCGCAGATGC 791
BSNT_05092___ 792 GAAGGATTTGGATGATGCAGTTACCGTGACGAAGCTTGATGATGGAAGCT 841
.||.||.|||||.|||||.||||||||.||.||.||..|..|.||....|
BL03482___rnr 792 CAAAGACTTGGACGATGCCGTTACCGTCACAAAACTCAAAAACGGCCATT 841
BSNT_05092___ 842 ACAAGCTTGGCGTTCACATAGCTGATGTCAGCCATTACGTAACCGAAAAC 891
|.||.||.|||||.|||||.||.||.|||||||||||.|||||.|||...
BL03482___rnr 842 ATAAACTCGGCGTCCACATTGCCGACGTCAGCCATTATGTAACGGAAGGA 891
BSNT_05092___ 892 TCGCCGATTGACAAAGAAGCGCTTGAAAGAGGGACAAGTGTGTATCTGGT 941
||.|||||||||.|.||||||..||||.|.||.||.||.||.||.||.||
BL03482___rnr 892 TCTCCGATTGACCAGGAAGCGTATGAACGCGGCACGAGCGTCTACCTTGT 941
BSNT_05092___ 942 TGACCGTGTCATCCCGATGATTCCGCACAGATTGTCAAACGGCATCTGCT 991
.|||||.||.||.||||||||.||||||||..|||||||.||.|||||||
BL03482___rnr 942 CGACCGGGTGATTCCGATGATCCCGCACAGGCTGTCAAATGGAATCTGCT 991
BSNT_05092___ 992 CCTTAAATCCAAAGGTTGACCGCCTGACGCTTTCTTGTGAAATGACAATT 1041
||||.|||||.|||||.|||.|.|||||..|.||.||.||||||...|||
BL03482___rnr 992 CCTTGAATCCGAAGGTCGACAGGCTGACAATGTCATGCGAAATGCTCATT 1041
BSNT_05092___ 1042 AACAGTCAGGGACAGGT-GACAGAGCACGAGATATTCCAAAGTGTCATCA 1090
||...|||.||.||.|| |.| ||||||||.||.||.|||||.|||||.|
BL03482___rnr 1042 AATCCTCAAGGGCAAGTCGTC-GAGCACGAAATTTTTCAAAGCGTCATTA 1090
BSNT_05092___ 1091 AAACAACGGAAAGAATGACATATTCAGATGTGAATAAAATTCTTGTTGAC 1140
||||.||.||..|.|||||.|||||.||||||||.||||||.|.||.||.
BL03482___rnr 1091 AAACGACCGAGCGGATGACTTATTCTGATGTGAACAAAATTTTAGTCGAT 1140
BSNT_05092___ 1141 GATGATGAAGAGCTGAAACAAAAATACGAGCCTCTTGTTCCGATGTTCAA 1190
||||||||||||||||||||.||.||.|||.|.|||||.||||||||.||
BL03482___rnr 1141 GATGATGAAGAGCTGAAACAGAAGTATGAGGCCCTTGTCCCGATGTTTAA 1190
BSNT_05092___ 1191 AGACATGGAGCGTC-TGGCTCAAATTCTGCGCGATAAGCGGATGGACCGC 1239
||||||||| .|.| |||||...||||||||||..|||||||||||.|||
BL03482___rnr 1191 AGACATGGA-AGACTTGGCTGCGATTCTGCGCGGCAAGCGGATGGAACGC 1239
BSNT_05092___ 1240 GGCGCCGTTGACTTTGATTTCAAAGAAGCAAAGGTGCTTGTTGATGACGA 1289
||.|||||.||||||||.||.||.|||||.|||||.||.||.||.||.||
BL03482___rnr 1240 GGAGCCGTCGACTTTGACTTTAAGGAAGCGAAGGTTCTCGTCGACGAAGA 1289
BSNT_05092___ 1290 AGG---AGCGGTTAAAGACGTTGTGATCAGAGAACGCTCTGTC-GCCGAG 1335
||| |||| ||.|||||.||..|.||||||||.|| |.| ||.||.
BL03482___rnr 1290 AGGAAAAGCG---AAGGACGTCGTCTTGAGAGAACGGTC-GACTGCTGAA 1335
BSNT_05092___ 1336 AAGCTGATTGAAGAATTTATGCTTGTAGCAAACGAAACAGTGGCGGAGCA 1385
||||||||||||||||||||||||||.||.||.|||||.||.||.|||||
BL03482___rnr 1336 AAGCTGATTGAAGAATTTATGCTTGTCGCCAATGAAACGGTCGCTGAGCA 1385
BSNT_05092___ 1386 TTTCCATTGGATGAACGTCCCGTTTATATACCGGATTCACGAAGAGCCGA 1435
.||.|||||||||||.||.||||||||.|||||||||||||||||.||..
BL03482___rnr 1386 CTTTCATTGGATGAATGTTCCGTTTATTTACCGGATTCACGAAGATCCAG 1435
BSNT_05092___ 1436 ATGCTGAAAAGCTGCAAAAGTTTTTAGAATTTGTGACGACATTTGGCTAT 1485
||...|||||||||||.|..|||||.||.||.||.||||||||.||||||
BL03482___rnr 1436 ATCAGGAAAAGCTGCAGAGATTTTTGGAGTTCGTTACGACATTCGGCTAT 1485
BSNT_05092___ 1486 GTGGTGAAAGGAACGGCGGGGAATATTCATCCGCGCGCGTTGCAAAGCAT 1535
||.||.||||||||||||||.|.|||.||||||...|||.||||||||.|
BL03482___rnr 1486 GTCGTCAAAGGAACGGCGGGAAGTATCCATCCGAAAGCGCTGCAAAGCGT 1535
BSNT_05092___ 1536 TCTGGACGCTGTGCGTGACAGACCAGAGGAAACGGTTATATCTACTGTTA 1585
.||.||.|..||..|.||..|.||.||.|||.|.||.||.||.||.||||
BL03482___rnr 1536 GCTTGAAGAAGTCAGGGATCGTCCTGAAGAAGCCGTAATTTCAACGGTTA 1585
BSNT_05092___ 1586 TGCTCCGTTCGATGAAACAGGCGAAATACGACCCGCAAAGCTTGGGGCAC 1635
|||||.|.|||||||||||||||||||||||.|||||||||.||||||||
BL03482___rnr 1586 TGCTCAGGTCGATGAAACAGGCGAAATACGATCCGCAAAGCCTGGGGCAC 1635
BSNT_05092___ 1636 TTCGGTCTGTCAACGGAATTCTATACGCATTTCACATCGCCGATCCGCCG 1685
|||||..||||.||.||||||||.|||||||||||.||.|||||.|||||
BL03482___rnr 1636 TTCGGCTTGTCGACTGAATTCTACACGCATTTCACGTCTCCGATTCGCCG 1685
BSNT_05092___ 1686 TTATCCGGACTTAATCGTTCACCGCCTGATCCGAACGTATTTGATCAACG 1735
.|||||.|||||||||||.|||.|.||||||.|.||.||||||||..|.|
BL03482___rnr 1686 CTATCCTGACTTAATCGTCCACAGACTGATCAGGACCTATTTGATTCAGG 1735
BSNT_05092___ 1736 GCAAAGTC-GATGAAGCGACTCAGGAAAAGTGGGCTGAACGCCTGCCGGA 1784
|| |||.| ||.||||||||...||||||.|||||.||....|||||.||
BL03482___rnr 1736 GC-AAGACAGACGAAGCGACAAGGGAAAAATGGGCCGAGAAACTGCCTGA 1784
BSNT_05092___ 1785 TATCGCCGAACATACATCATCAATGGAGCGCCGTGCAGTTGACGCCGAGC 1834
.||||||||.|||||.|||...|||||.|||..|||.||.||.||.||||
BL03482___rnr 1785 GATCGCCGAGCATACGTCAAATATGGAACGCAATGCCGTAGATGCGGAGC 1834
BSNT_05092___ 1835 GTGAGACGGATGATCTGAAAAAAGCGGAATACATGCTTGATAAAATCGGT 1884
|.||.|||||.||||||||||||.|.||||..|||||.|||||.||||||
BL03482___rnr 1835 GGGAAACGGACGATCTGAAAAAAACCGAATTTATGCTGGATAAGATCGGT 1884
BSNT_05092___ 1885 GAAGAGTTTGACGGCATGATCAGCTCTGTGACAAACTTCGGAATGTTCGT 1934
|||||.|||||||||.|.||||||||.||.||.||||||||.||||||||
BL03482___rnr 1885 GAAGAATTTGACGGCGTCATCAGCTCCGTCACGAACTTCGGCATGTTCGT 1934
BSNT_05092___ 1935 CGAGCTGCCGAATACAATTGAAGGACTCGTCCACGTCAGCTTTATGACAG 1984
||||||||||||.||.||.|||||.||.||||||||||||||||||||.|
BL03482___rnr 1935 CGAGCTGCCGAACACGATCGAAGGGCTTGTCCACGTCAGCTTTATGACGG 1984
BSNT_05092___ 1985 ATGACTACTACCGATTTGACGAACAGCATTTCGCAATGATCGGCGAGCGG 2034
||||.|.||||||.|.|||.||||||||.|.|||.||||||||||||||.
BL03482___rnr 1985 ATGATTTCTACCGTTATGATGAACAGCACTACGCGATGATCGGCGAGCGC 2034
BSNT_05092___ 2035 ACAGGCAACGTCTTCCGCATCGGGGATGAAATCACAGTCAAGGTTGTCGA 2084
||.||||||||.|.|||.|||||.|||||.||.||.|||...||.||.||
BL03482___rnr 2035 ACGGGCAACGTGTACCGGATCGGCGATGAGATTACGGTCCGCGTCGTTGA 2084
BSNT_05092___ 2085 TGTCAATAAAGATGAGCGCAATATCGACTTTGAAATTGTCGGCATGAAGG 2134
.|||||||||||.|||||.||.|||||.||||||||.|||||||||||.|
BL03482___rnr 2085 CGTCAATAAAGACGAGCGGAACATCGATTTTGAAATCGTCGGCATGAAAG 2134
BSNT_05092___ 2135 GCACTCCGCGGCGTCCGAGAGAATTGGACAGCAGCCGGAGCAGAAAACGC 2184
||.| ||||.|| .|.|||.|||||||||
BL03482___rnr 2135 GCTC-CCGCCGC-------------CGGCAGAAGCCGGAGC--------- 2161
BSNT_05092___ 2185 GGAAAGCCTGCCAGAAAACGTGTTCAAAGCACCAATACACCTGTGTCTCC 2234
.|||| |||||||.|..|||||| ||.|.|
BL03482___rnr 2162 -CAAAG-----CAGAAAAAGGCTTCAAA-----AAGAGA----------- 2189
BSNT_05092___ 2235 AGCTCCGTCTGAGGAAAAAGGGGAGTGGTTCACTAAGCCGAAGAAGAA-- 2282
.|||||.||.|..||.||||||||.||||||||.||||||||.|||||
BL03482___rnr 2190 GGCTCCATCGGCTGACAAAGGGGAATGGTTCACCAAGCCGAAAAAGAAAA 2239
BSNT_05092___ 2283 ----AAAGAAAAAACGCGGCTTCCAGAATGCTCCGAAACAGAAACG---G 2325
|||||||||||||||.||.||.||.||.||||||||.||||| |
BL03482___rnr 2240 AAGTAAAGAAAAAACGCGGTTTTCAAAACGCGCCGAAACAAAAACGCAAG 2289
BSNT_05092___ 2326 AAAAAGAAGAAATAG 2340
||||||||.||||||
BL03482___rnr 2290 AAAAAGAAAAAATAG 2304
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