Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05115 and BL03476
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:13
# Commandline: needle
# -asequence dna-align/BSNT_05115___opuCC.1.5803.seq
# -bsequence dna-align/BL03476___opuCC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05115___opuCC-BL03476___opuCC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05115___opuCC-BL03476___opuCC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05115___opuCC
# 2: BL03476___opuCC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 935
# Identity: 708/935 (75.7%)
# Similarity: 708/935 (75.7%)
# Gaps: 34/935 ( 3.6%)
# Score: 2668.5
#
#
#=======================================
BSNT_05115___ 1 TTGAAAATG---ACAAAAA---TCAAATGGCTTGGCGCGTT--------T 36
||| ||||||| |.|.|.||||.|||||..| |
BL03476___opu 1 ------ATGCAAACAAAAAAACTGAGACGGCTCGGCGCCGTCATGCTGGT 44
BSNT_05115___ 37 GCTCTCGTCTTTG-TCATGCTGCTAGGCGGCTGCTCTCTGCCGGGTCTCG 85
.||||||..|||| ||| |||||||..|.||||||||.||.|
BL03476___opu 45 CCTCTCGCTTTTGATCA---------GCGGCTGTGCGCTGCCGGGCCTTG 85
BSNT_05115___ 86 GCGGCGCTTCTGACGACACGATCAAAATCGGGGCGCAAAGCATGACAGAA 135
||||.|||||.||..|.||||||||||||||.|||||||.|.||||.|||
BL03476___opu 86 GCGGGGCTTCCGATAAAACGATCAAAATCGGAGCGCAAAACCTGACCGAA 135
BSNT_05115___ 136 TCAGAAATTTTAGCGAATATGATCGCGCAGCTTATTGAACATGATACAGA 185
||.||||||.|.||.|||||||||.|||...|.||.||.||||||||.||
BL03476___opu 136 TCCGAAATTCTTGCCAATATGATCTCGCTTTTGATCGAGCATGATACGGA 185
BSNT_05115___ 186 TTTGAATACCGCTTTAGTGAAAAACCTCGGCTCAAACTATGTTCAGCACC 235
|.|.|||||.|...|.||.|||||||||||||||||||||||.|||||||
BL03476___opu 186 TCTCAATACGGTGCTGGTCAAAAACCTCGGCTCAAACTATGTGCAGCACC 235
BSNT_05115___ 236 AAGCGATGCTGGGCGGTGACATTGATATTTCAGCCACGCGCTATTCCGGA 285
|.||.|||||.|||||.|||||.||.|||||.||.|||||||||||.|||
BL03476___opu 236 AGGCCATGCTCGGCGGAGACATCGACATTTCTGCGACGCGCTATTCGGGA 285
BSNT_05115___ 286 ACAGATTTAACAAGCACCCTCGGCAAGGAAGCGGAGAAAGATCCGAAAAA 335
||.||..|.||||||||.||.||.|.|||||||||||||||.||||||||
BL03476___opu 286 ACTGACCTGACAAGCACGCTTGGAAGGGAAGCGGAGAAAGACCCGAAAAA 335
BSNT_05115___ 336 AGCGCTGAACATTGTGCAGAACGAGTTTCAAAAGCGCTTTTCTTATAAAT 385
||||||...|||.||.|||.|.||.|||||||||...||....||.||||
BL03476___opu 336 AGCGCTCCGCATCGTACAGCAGGACTTTCAAAAGAAATTCAACTACAAAT 385
BSNT_05115___ 386 GGTTTGATTCCTACGGCTTTGATAACACGTATGCCTTCACCGTAACAAAA 435
||||.|||||.|||||.|||||.||.|||||.||.||.||.||.||.|||
BL03476___opu 386 GGTTCGATTCTTACGGATTTGACAATACGTACGCTTTTACAGTCACGAAA 435
BSNT_05115___ 436 AAGTTTGCGGAAAATGAGCA-TATTAACACCGTGTCCGACCTGAAAAAAA 484
.|..|.||.|||||.|.|.| |||.|| |||.|.|||||.|||||||||.
BL03476___opu 436 GAACTCGCTGAAAAAGGGAACTATGAA-ACCATATCCGATCTGAAAAAAG 484
BSNT_05115___ 485 ATGCCTCCCAATATAAATTAGGCGTCGACAATGCCTGGCTGAAACGGAAA 534
|.||....|||...||..|.|||||.||||||||.|||||||||||.|||
BL03476___opu 485 ACGCGGATCAACTGAAGCTTGGCGTTGACAATGCATGGCTGAAACGAAAA 534
BSNT_05115___ 535 GGCGACGGATATAAAGGCTTT-GTCAGCACATATGGCTTTGAATTCGGCA 583
||||||||||||...||.||| ..|||.| |||.||.|||..|||.|||.
BL03476___opu 535 GGCGACGGATATCCGGGATTTAAACAGGA-ATACGGGTTTTCATTTGGCT 583
BSNT_05115___ 584 CAACTTATCCGATGCAGATCGGGCTTGTCTATGACGCAGTCAAAAACGGG 633
|.||.|.|||.|||||||||||.||.||.||||||||.|||||||||||.
BL03476___opu 584 CGACCTTTCCAATGCAGATCGGACTCGTTTATGACGCCGTCAAAAACGGC 633
BSNT_05115___ 634 AAAATGGACGCCGTTTTGGCTTATTCAACGGATGGACGGATTAAAGCATA 683
||||||||...||||.|.||.||||||||.||.||..||||.|||||.||
BL03476___opu 634 AAAATGGATATCGTTCTTGCCTATTCAACAGACGGCAGGATCAAAGCCTA 683
BSNT_05115___ 684 CGATCTGAAAATCTTAAAAGACGATAAGCGTTTCTTCCCGCCGTATGACT 733
.|||.|.||..|.||||||||||||||.||.||.||||||||||||||||
BL03476___opu 684 TGATTTAAAGCTGTTAAAAGACGATAAACGCTTTTTCCCGCCGTATGACT 733
BSNT_05115___ 734 GTTCACCGGTGATTCCGGAAAAGGTGCTTAAGGAGCATCCGGAGCTTGAG 783
||||.|||||..|.||||||||.|||||.||||||||||||||||||||.
BL03476___opu 734 GTTCGCCGGTCGTGCCGGAAAAAGTGCTGAAGGAGCATCCGGAGCTTGAA 783
BSNT_05115___ 784 GGTGTGATCAATAAGCTGATTGGGCAAATCGACACGGAAACGATGCAGGA 833
|.....||||||||.||||||||..||||||||||.||||||||||||||
BL03476___opu 784 GAGACCATCAATAAACTGATTGGAAAAATCGACACCGAAACGATGCAGGA 833
BSNT_05115___ 834 ACTTAATTATGAAGTGGATGGCAAGCTGAAGGAGCCGTCTGTCGTAGCAA 883
.||.|||||.|||||.|||||.||||||||.|||||.||||||||.||..
BL03476___opu 834 GCTCAATTACGAAGTCGATGGAAAGCTGAAAGAGCCTTCTGTCGTCGCGG 883
BSNT_05115___ 884 AGGAATTTTTAGAGAAACATCATTATTTTGACTAA 918
..||.||||||.||||.||..||||||||||.|||
BL03476___opu 884 CCGAGTTTTTAAAGAAGCACAATTATTTTGAGTAA 918
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