Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05115 and BL03476

See Amino acid alignment / Visit BSNT_05115 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:13
# Commandline: needle
#    -asequence dna-align/BSNT_05115___opuCC.1.5803.seq
#    -bsequence dna-align/BL03476___opuCC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05115___opuCC-BL03476___opuCC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05115___opuCC-BL03476___opuCC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05115___opuCC
# 2: BL03476___opuCC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 935
# Identity:     708/935 (75.7%)
# Similarity:   708/935 (75.7%)
# Gaps:          34/935 ( 3.6%)
# Score: 2668.5
# 
#
#=======================================

BSNT_05115___      1 TTGAAAATG---ACAAAAA---TCAAATGGCTTGGCGCGTT--------T     36
                           |||   |||||||   |.|.|.||||.|||||..|        |
BL03476___opu      1 ------ATGCAAACAAAAAAACTGAGACGGCTCGGCGCCGTCATGCTGGT     44

BSNT_05115___     37 GCTCTCGTCTTTG-TCATGCTGCTAGGCGGCTGCTCTCTGCCGGGTCTCG     85
                     .||||||..|||| |||         |||||||..|.||||||||.||.|
BL03476___opu     45 CCTCTCGCTTTTGATCA---------GCGGCTGTGCGCTGCCGGGCCTTG     85

BSNT_05115___     86 GCGGCGCTTCTGACGACACGATCAAAATCGGGGCGCAAAGCATGACAGAA    135
                     ||||.|||||.||..|.||||||||||||||.|||||||.|.||||.|||
BL03476___opu     86 GCGGGGCTTCCGATAAAACGATCAAAATCGGAGCGCAAAACCTGACCGAA    135

BSNT_05115___    136 TCAGAAATTTTAGCGAATATGATCGCGCAGCTTATTGAACATGATACAGA    185
                     ||.||||||.|.||.|||||||||.|||...|.||.||.||||||||.||
BL03476___opu    136 TCCGAAATTCTTGCCAATATGATCTCGCTTTTGATCGAGCATGATACGGA    185

BSNT_05115___    186 TTTGAATACCGCTTTAGTGAAAAACCTCGGCTCAAACTATGTTCAGCACC    235
                     |.|.|||||.|...|.||.|||||||||||||||||||||||.|||||||
BL03476___opu    186 TCTCAATACGGTGCTGGTCAAAAACCTCGGCTCAAACTATGTGCAGCACC    235

BSNT_05115___    236 AAGCGATGCTGGGCGGTGACATTGATATTTCAGCCACGCGCTATTCCGGA    285
                     |.||.|||||.|||||.|||||.||.|||||.||.|||||||||||.|||
BL03476___opu    236 AGGCCATGCTCGGCGGAGACATCGACATTTCTGCGACGCGCTATTCGGGA    285

BSNT_05115___    286 ACAGATTTAACAAGCACCCTCGGCAAGGAAGCGGAGAAAGATCCGAAAAA    335
                     ||.||..|.||||||||.||.||.|.|||||||||||||||.||||||||
BL03476___opu    286 ACTGACCTGACAAGCACGCTTGGAAGGGAAGCGGAGAAAGACCCGAAAAA    335

BSNT_05115___    336 AGCGCTGAACATTGTGCAGAACGAGTTTCAAAAGCGCTTTTCTTATAAAT    385
                     ||||||...|||.||.|||.|.||.|||||||||...||....||.||||
BL03476___opu    336 AGCGCTCCGCATCGTACAGCAGGACTTTCAAAAGAAATTCAACTACAAAT    385

BSNT_05115___    386 GGTTTGATTCCTACGGCTTTGATAACACGTATGCCTTCACCGTAACAAAA    435
                     ||||.|||||.|||||.|||||.||.|||||.||.||.||.||.||.|||
BL03476___opu    386 GGTTCGATTCTTACGGATTTGACAATACGTACGCTTTTACAGTCACGAAA    435

BSNT_05115___    436 AAGTTTGCGGAAAATGAGCA-TATTAACACCGTGTCCGACCTGAAAAAAA    484
                     .|..|.||.|||||.|.|.| |||.|| |||.|.|||||.|||||||||.
BL03476___opu    436 GAACTCGCTGAAAAAGGGAACTATGAA-ACCATATCCGATCTGAAAAAAG    484

BSNT_05115___    485 ATGCCTCCCAATATAAATTAGGCGTCGACAATGCCTGGCTGAAACGGAAA    534
                     |.||....|||...||..|.|||||.||||||||.|||||||||||.|||
BL03476___opu    485 ACGCGGATCAACTGAAGCTTGGCGTTGACAATGCATGGCTGAAACGAAAA    534

BSNT_05115___    535 GGCGACGGATATAAAGGCTTT-GTCAGCACATATGGCTTTGAATTCGGCA    583
                     ||||||||||||...||.||| ..|||.| |||.||.|||..|||.|||.
BL03476___opu    535 GGCGACGGATATCCGGGATTTAAACAGGA-ATACGGGTTTTCATTTGGCT    583

BSNT_05115___    584 CAACTTATCCGATGCAGATCGGGCTTGTCTATGACGCAGTCAAAAACGGG    633
                     |.||.|.|||.|||||||||||.||.||.||||||||.|||||||||||.
BL03476___opu    584 CGACCTTTCCAATGCAGATCGGACTCGTTTATGACGCCGTCAAAAACGGC    633

BSNT_05115___    634 AAAATGGACGCCGTTTTGGCTTATTCAACGGATGGACGGATTAAAGCATA    683
                     ||||||||...||||.|.||.||||||||.||.||..||||.|||||.||
BL03476___opu    634 AAAATGGATATCGTTCTTGCCTATTCAACAGACGGCAGGATCAAAGCCTA    683

BSNT_05115___    684 CGATCTGAAAATCTTAAAAGACGATAAGCGTTTCTTCCCGCCGTATGACT    733
                     .|||.|.||..|.||||||||||||||.||.||.||||||||||||||||
BL03476___opu    684 TGATTTAAAGCTGTTAAAAGACGATAAACGCTTTTTCCCGCCGTATGACT    733

BSNT_05115___    734 GTTCACCGGTGATTCCGGAAAAGGTGCTTAAGGAGCATCCGGAGCTTGAG    783
                     ||||.|||||..|.||||||||.|||||.||||||||||||||||||||.
BL03476___opu    734 GTTCGCCGGTCGTGCCGGAAAAAGTGCTGAAGGAGCATCCGGAGCTTGAA    783

BSNT_05115___    784 GGTGTGATCAATAAGCTGATTGGGCAAATCGACACGGAAACGATGCAGGA    833
                     |.....||||||||.||||||||..||||||||||.||||||||||||||
BL03476___opu    784 GAGACCATCAATAAACTGATTGGAAAAATCGACACCGAAACGATGCAGGA    833

BSNT_05115___    834 ACTTAATTATGAAGTGGATGGCAAGCTGAAGGAGCCGTCTGTCGTAGCAA    883
                     .||.|||||.|||||.|||||.||||||||.|||||.||||||||.||..
BL03476___opu    834 GCTCAATTACGAAGTCGATGGAAAGCTGAAAGAGCCTTCTGTCGTCGCGG    883

BSNT_05115___    884 AGGAATTTTTAGAGAAACATCATTATTTTGACTAA    918
                     ..||.||||||.||||.||..||||||||||.|||
BL03476___opu    884 CCGAGTTTTTAAAGAAGCACAATTATTTTGAGTAA    918


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