Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05117 and BL03474
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:14
# Commandline: needle
# -asequence dna-align/BSNT_05117___opuCA.1.5803.seq
# -bsequence dna-align/BL03474___opuCA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05117___opuCA-BL03474___opuCA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05117___opuCA-BL03474___opuCA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05117___opuCA
# 2: BL03474___opuCA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1153
# Identity: 888/1153 (77.0%)
# Similarity: 888/1153 (77.0%)
# Gaps: 23/1153 ( 2.0%)
# Score: 3290.0
#
#
#=======================================
BSNT_05117___ 1 TTGCTGAAATTGGAACAAGTGTCAAAAGTATATAAAGGCGGCAAAAAAGC 50
||||||||..|.||..|.||.|||||.||.|||||||||||.||||||||
BL03474___opu 1 TTGCTGAAGCTAGAGAATGTATCAAAGGTTTATAAAGGCGGAAAAAAAGC 50
BSNT_05117___ 51 TGTGAACAGCATTGATTTAGATATTGCCAAAGGTGAATTTATCTGT-TTT 99
.||.||.|.||||.|..|.|||||.||.||||||||||||||| || |||
BL03474___opu 51 GGTCAAAAACATTAACCTTGATATAGCAAAAGGTGAATTTATC-GTCTTT 99
BSNT_05117___ 100 ATCGGCCCGAGCGGCTGCGGAAAAACGACGACGATGAAGATGATCAACAG 149
|||||.||||||||||||||.|||||.|||||||||||.|||||||||.|
BL03474___opu 100 ATCGGACCGAGCGGCTGCGGGAAAACAACGACGATGAAAATGATCAACCG 149
BSNT_05117___ 150 ACTGATAGAACCATCGTCTGGAAGGATCTTTATCGACGGAGAAAATATTA 199
..||||.|||||..|.||.|||||.||.|..||||||||||||||.||.|
BL03474___opu 150 CTTGATTGAACCGACTTCAGGAAGCATTTACATCGACGGAGAAAACATAA 199
BSNT_05117___ 200 TGGAACAGGACCCGGTTGAGCTGAGGAGAAAAATCGGCTATGTGATTCAG 249
||||.|||||||||||.||||||.|..|.||||||||||||||.||||||
BL03474___opu 200 TGGATCAGGACCCGGTGGAGCTGCGCCGGAAAATCGGCTATGTCATTCAG 249
BSNT_05117___ 250 CAGATTGGTTTGTTCCCCCATATGACCATCCAGCAGAACATCTCACTCGT 299
||.||.||..|.||.|||||||||||.||.||||||||.|||.|.|||||
BL03474___opu 250 CAAATCGGACTCTTTCCCCATATGACGATTCAGCAGAATATCACGCTCGT 299
BSNT_05117___ 300 ACCAAAGCTGCTGAAATGGCCTGAGGAAAAGCGGAAAGAA-CGGGCGCGC 348
.||.|.|||..||||||||||.||.||||||| ||||||| ||||||...
BL03474___opu 300 TCCGAGGCTTTTGAAATGGCCGGAAGAAAAGC-GAAAGAAGCGGGCGGAG 348
BSNT_05117___ 349 GAGCTGTTAAAGCTTGTGGATATGGGCCCGGAGTATTTAGACCGTTATCC 398
||.|||.|..||||.||.||||||||.|||||.|||||..||||.||.||
BL03474___opu 349 GAACTGCTGCAGCTCGTTGATATGGGGCCGGAATATTTGAACCGCTACCC 398
BSNT_05117___ 399 GTATGAGCTCAGCGGCGGACAGCAGCAGAGAATCGGCGTGCTGCGCGCCC 448
..||||.||.|||||||||||||||||||||||||||||||||||.||.|
BL03474___opu 399 TCATGAACTAAGCGGCGGACAGCAGCAGAGAATCGGCGTGCTGCGGGCGC 448
BSNT_05117___ 449 TGGCAGCGGAACCCCCTCTCATTTTAATGGATGAACCGTTCGGAGCGCTT 498
|.||.||.||.||.||.||||||||||||||||||||||||||||||||.
BL03474___opu 449 TTGCGGCAGAGCCGCCCCTCATTTTAATGGATGAACCGTTCGGAGCGCTG 498
BSNT_05117___ 499 GATCCGATTACGCGTGATTCCCTTCAGGAAGAATTCAAAAAACTGCAGAG 548
||.||||||||.||||||||.|||||||||||.||||||||.||.||||.
BL03474___opu 499 GACCCGATTACCCGTGATTCGCTTCAGGAAGAGTTCAAAAAGCTTCAGAA 548
BSNT_05117___ 549 AACCTTAAACAAAACGATTGTGTTTGTAACCCACGATATGGATGAAGCGA 598
|.|..|..|||||||||||||.||||||||||||||||||||||||||||
BL03474___opu 549 ATCGCTGGACAAAACGATTGTCTTTGTAACCCACGATATGGATGAAGCGA 598
BSNT_05117___ 599 TTAAGCTTGCTGACAGGATTGTGATATTAAAAGCGGGAGAAATCGTTCAA 648
||||||||||||||||.||.||.||..|....||.||.||.|||||.|||
BL03474___opu 599 TTAAGCTTGCTGACAGAATCGTCATCCTTCGCGCCGGCGAGATCGTGCAA 648
BSNT_05117___ 649 GTCGGCACACCTGATGAGATTCTTCGAAACCCGGCAAATGAGTTTGTTGA 698
|||||..|.|||||.||.|||.|.||.||.|||||..||||.||.|||||
BL03474___opu 649 GTCGGATCGCCTGACGACATTTTGCGGAAACCGGCGGATGAATTCGTTGA 698
BSNT_05117___ 699 AGAATTTATCGGGAAAGAGCGCCTGATTCAGTCAAGACCGGATATCGAGC 748
.|||||||||||.||||||.|.||..|||||||..|.||.||.|||||||
BL03474___opu 699 GGAATTTATCGGAAAAGAGAGGCTTCTTCAGTCCCGTCCTGACATCGAGC 748
BSNT_05117___ 749 GGGTAGAGCAAATGATGAA-CAGAACGCCGGTGACG-GTATCTGCGGACA 796
..||.||.|||.|.||||| |.||| .|||||.||| .||...|||.|.|
BL03474___opu 749 ATGTCGAACAAGTAATGAACCCGAA-TCCGGTCACGATTACGAGCGAAAA 797
BSNT_05117___ 797 AAACGCTTTCTCAGGCGATTCAGCTGATGAGAGAAAAACGTGTTGACTCG 846
|||| ||..||.|.||.|||||..|||||||.|||...||.||.||.||.
BL03474___opu 798 AAAC-CTGACTGAAGCAATTCAAGTGATGAGGGAACGCCGCGTCGATTCA 846
BSNT_05117___ 847 CTGCTCGTTGTGGACCGGCAAAACGTGCTGAAGGGCTATGTTGATGTGGA 896
||||||||.||||||...||.||.||..|.||.||.|||.|.|||||.||
BL03474___opu 847 CTGCTCGTCGTGGACGAACACAATGTCTTAAAAGGATATATCGATGTTGA 896
BSNT_05117___ 897 AATGATTGATCAAAACCGCAAAAAAGCGAGCATCGTTGGCGACGTATACC 946
|||.||.|||||.|||||.||||||.|...||..||.||.||.|| |..|
BL03474___opu 897 AATCATCGATCAGAACCGGAAAAAATCCGTCACAGTCGGGGAGGT-TGTC 945
BSNT_05117___ 947 GTTCAGATATATATA--CCGTTCAAAAAGGGGCGCTTCTTC-GCGATACA 993
..|.||| ||.|.|| |||||||||||||..||| ||.|| |.|||||.
BL03474___opu 946 AATGAGA-ATGTTTACTCCGTTCAAAAAGGAACGC-TCATCAGGGATACC 993
BSNT_05117___ 994 GTCCGAAAAATTTTGAAGCAGGGGA-TCAAGTATGTTCCGGTGGTCGATG 1042
|||||.||||||||||| .|||||| ||||.||||||||.||..|.||||
BL03474___opu 994 GTCCGGAAAATTTTGAA-AAGGGGATTCAAATATGTTCCCGTTCTTGATG 1042
BSNT_05117___ 1043 AACAGAACCATTTAGCAGGGATTGTGACAAGAGCGAGCCTCGTTGATATC 1092
||.||..||...|.|..||||||||.|||||.||.|.|||.||.||||||
BL03474___opu 1043 AAGAGGGCCGCCTTGTCGGGATTGTCACAAGGGCAAACCTTGTCGATATC 1092
BSNT_05117___ 1093 GTATACGATTCCATTTGGGGCGACGAGGAAAACC-AGCTCATGACGATCT 1141
||.|||||.||.||||||||.||.||.||||.|| .|.||| ||| |
BL03474___opu 1093 GTGTACGACTCGATTTGGGGAGATGAAGAAACCCTTGTTCA--ACG---T 1137
BSNT_05117___ 1142 GA- 1143
.|
BL03474___opu 1138 TAA 1140
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