Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05168 and BL03455
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:17
# Commandline: needle
# -asequence dna-align/BSNT_05168.1.5803.seq
# -bsequence dna-align/BL03455___yvfI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05168-BL03455___yvfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05168-BL03455___yvfI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05168
# 2: BL03455___yvfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 780
# Identity: 539/780 (69.1%)
# Similarity: 539/780 (69.1%)
# Gaps: 96/780 (12.3%)
# Score: 1821.0
#
#
#=======================================
BSNT_05168 1 TTGAAATACAAACAGATTAAAACAAAAAAAATATATGAAGAAGTAGCGGA 50
||||||||||||||.||.||.||.||||||||||||||||||||.|||||
BL03455___yvf 1 TTGAAATACAAACAAATCAAGACGAAAAAAATATATGAAGAAGTCGCGGA 50
BSNT_05168 51 TGCACTATTAGATAT-GATCAAAAACGGCGA-ATTGAAGCCTGGGGATAA 98
.||.||..|.|| || |||.||||.|||.|| .||| ||||.||.||.||
BL03455___yvf 51 AGCGCTTCTTGA-ATCGATTAAAAGCGGAGAGCTTG-AGCCCGGCGACAA 98
BSNT_05168 99 ACTGGACTCTGTTCAGGCGCTTGCTGAGAGCTTTCAAGTCAGCCGTTCAG 148
.||.|||||.||.||.|||||.||.||.||||||||.|||||||||||.|
BL03455___yvf 99 GCTTGACTCCGTCCAAGCGCTCGCCGACAGCTTTCAGGTCAGCCGTTCGG 148
BSNT_05168 149 CGGTTCGCGAAGCACTTTCTGCGCTAAAGGCGATGGGGCTTGTCGAAATG 198
|.||..|.|||||.||.||.|||.||||.|||||||||.|.|||||||||
BL03455___yvf 149 CCGTAAGGGAAGCGCTGTCCGCGTTAAAAGCGATGGGGATGGTCGAAATG 198
BSNT_05168 199 AAACAGGGAGAAGGCACGTATCTGAAGGAA--TTTGAGCTCAATCAAATT 246
||.|||||.|||||.||||||.|||| || |||||||...|.||||||
BL03455___yvf 199 AAGCAGGGGGAAGGGACGTATGTGAA--AAGGTTTGAGCCTGAGCAAATT 246
BSNT_05168 247 TC--TCAGCCGCTCTCAGCCGCCCTTCTGATGAAAAAAGAGGACGTCAAG 294
|| || ||.||.||.||.||.|||.||||||||||..|.||.||| |
BL03455___yvf 247 TCCATC--CCCCTTTCGGCTGCACTTTTGATGAAAAAGAAAGATGTC--G 292
BSNT_05168 295 C--AGCTGCTCGAGGTCAGAAAACTGCTTGAAATCGGCGTGGCTT-CACT 341
| |.||||||||.|||.|.|||.|.|||||||||||.|..|.|| ||.|
BL03455___yvf 293 CTGAACTGCTCGAAGTCCGTAAAATACTTGAAATCGGGGCAGTTTCCAGT 342
BSNT_05168 342 AGCGGCTGAAAAAAGGACAGAAGCAGATCTCAAAAGAATTCATGATGCAC 391
||||||.|||||.|.||.||.|..||||||..|.|.||.||.||.||||
BL03455___yvf 343 -GCGGCTCAAAAACGCACGGAGGATGATCTCGGACGCATGCAGGAAGCAC 391
BSNT_05168 392 TAAAGGAAATGGGCAGCATTGAAGCGGACGGG------GAGCTGGGAGAG 435
|..||||.|| |.||| || ||||||||| ||.||.||.||.
BL03455___yvf 392 TTGAGGATAT--GAAGC--TG--GCGGACGGGAACGGCGAACTTGGCGAA 435
BSNT_05168 436 AAAGCAGACTTTGCATTTCATCTTGCGCTTGCGGACGCTTCTCAAAATGA 485
|||||.|||.|.||.|||||.|||||||||||.|.||||||.||.||.||
BL03455___yvf 436 AAAGCCGACCTCGCGTTTCACCTTGCGCTTGCCGGCGCTTCGCAGAACGA 485
BSNT_05168 486 ACTTCTTAAACACTTGATGAATCACGTGTCATC-------ATTGCTGCTG 528
.||.||.|||..||||||||||||.|||||||| |||
BL03455___yvf 486 TCTGCTGAAAGGCTTGATGAATCATGTGTCATCTCTCTTAATT------- 528
BSNT_05168 529 GAAACAATGAGGGAAACGAGGAAAATCTGGCTGTTTTCCAAGAAGACCTC 578
||.||.||||||||.|||.|.|||||.||||||||.||.|||||.||..|
BL03455___yvf 529 GAGACGATGAGGGAGACGCGCAAAATTTGGCTGTTCTCGAAGAATACAAC 578
BSNT_05168 579 CGTTCAGCGGCTGTATGAGGAGCACGAACGGATTTACAATGCTGTGGCTG 628
.|||.||||.||.||||||||.||||||...||.||..|.||||||
BL03455___yvf 579 TGTTAAGCGCCTTTATGAGGAACACGAAGCCATCTATCAGGCTGTG---- 624
BSNT_05168 629 CCGGGA-----ACGGTGCACAGGCGGAAGC-CGCCATGC----TGGCGCA 668
..||| ||||...|.|.|||| ||| .||.|||| | ||
BL03455___yvf 625 -AAGGAAAAAGACGGCCAAAAAGCGG-AGCAAGCGATGCACAAT----CA 668
BSNT_05168 669 TTTGACGAATGTGGAAGATGTGCTTTCGGG----ATATTTCGAGGAAAAT 714
|.||||.|||||||||.||||||| || ||||||.||.||||
BL03455___yvf 669 TCTGACAAATGTGGAAAATGTGCT----GGCCTCATATTTTGAAGAAA-- 712
BSNT_05168 715 GTGCAATAA--------------------- 723
.|.||.||
BL03455___yvf 713 -CGAAACAAGCCGACGAGCCGGCTATTTAA 741
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