Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05176 and BL03451
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:18
# Commandline: needle
# -asequence dna-align/BSNT_05176___yvfD.1.5803.seq
# -bsequence dna-align/BL03451___yvfD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05176___yvfD-BL03451___yvfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05176___yvfD-BL03451___yvfD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05176___yvfD
# 2: BL03451___yvfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 726
# Identity: 408/726 (56.2%)
# Similarity: 408/726 (56.2%)
# Gaps: 174/726 (24.0%)
# Score: 962.5
#
#
#=======================================
BSNT_05176___ 1 ATGAAAAACGTGGCCATTGTGGGTGACGGCGGACA-CGGAAAGGTGATCA 49
|||.|||||||||..||..|.||.|.||||||.|| .||||||..|.||
BL03451___yvf 1 ATGCAAAACGTGGTGATCATCGGAGCCGGCGGCCATGGGAAAGTCGTTC- 49
BSNT_05176___ 50 GAGAGCTGATAAA----CGCCCGCTCAGATAC-GCGCTTAGCCGCGGTGC 94
|.||.||..|||| ||.||| ||||| |.|||| ||||...|.|
BL03451___yvf 50 GGGAACTTGTAAAAGAGCGGCCG----GATACGGAGCTT-GCCGGTATTC 94
BSNT_05176___ 95 TGGATGATAAATTCAAAACGTTCGAAGGCGGA---------AAAGAATG- 134
|.|||| |.|| |.|.||||| ..||||.|
BL03451___yvf 95 TTGATG----------ACCG---GTATGCGGAGCTTCATGTTGAGAACGG 131
BSNT_05176___ 135 ---GTACACAGGACC-------GCCG--GAAGCCGTTACTGAAC-TGCGC 171
|||...|||.|| |||| ||| |||| |||||
BL03451___yvf 132 TCTGTATCGAGGGCCTTCAGCTGCCGCAGAA---------GAACTTGCGC 172
BSNT_05176___ 172 AGGC-TCATTCCTGATGTGCTGTTTCTGATTGCTGTTGGGAATAACAGTG 220
||| ||| |||.||.|.|..|||..|..|.|||||.||..|.|||||..
BL03451___yvf 173 -GGCTTCA-TCCGGACGCGAAGTTCGTCCTGGCTGTCGGCCAAAACAGCA 220
BSNT_05176___ 221 TCAGAAAACAGCTGGCGGAGCG-ACTGG----------GAC-----TGAG 254
|||||.|.||||||...||.|| |.||| ||| ||.|
BL03451___yvf 221 TCAGACAGCAGCTGTATGAACGCATTGGTCTTCCGCTTGACCGGTATGCG 270
BSNT_05176___ 255 GAAAGATGATTTTATTACATTGATTCACCCGTCAGCCATCGTCAGCAGGT 304
| || ||||||||.||.||.||..|.||||||.|.|
BL03451___yvf 271 G-------------TT---TTGATTCATCCCTCTGCTGTTGTCAGCGGTT 304
BSNT_05176___ 305 CGGC-----TGTCATTGGGGAA--GGGACAGTGATTATGG---CGGGCGC 344
|||| | ||| || ||..|.||..|||||| ||.|||
BL03451___yvf 305 CGGCCCGGAT-TCA------AAACGGCGCCGTTGTTATGGCATCGAGCG- 346
BSNT_05176___ 345 GATCATTCAGGCGGATG-------CGCGCATCGGCGCTCATTGCATCATC 387
||||.||.||||||| || |||||..||| .|||| ||
BL03451___yvf 347 --TCATCCAAGCGGATGCAGACGTCG-GCATCCACGC-GATTG-----TC 387
BSNT_05176___ 388 AATACGGGTGCAGTGGCAGAGCACGATAATCAAATCAGCGATTACGTTCA 437
||.||.|||||..|.|..||.|||||.||||..|||.|||||||||||||
BL03451___yvf 388 AACACAGGTGCGATCGTCGAACACGACAATCGGATCGGCGATTACGTTCA 437
BSNT_05176___ 438 TCTGTC-CCCGCGTGTCACGCTGT---CAGGAGCGGTTTCCGTTCAGGAA 483
|||.|| ||| |..|||.||| |.||.|..||..|.|||..||||
BL03451___yvf 438 TCTTTCGCCC----GGAACGGTGTTAACCGGCGGCGTGACAGTTATGGAA 483
BSNT_05176___ 484 GGCGCTCACGTCGGAACTGGTGCATCCGTCATACCGCAG-ATCACAATCG 532
||||||||..||||..|.||..|..|.|||||.|| |.| |..|||.|||
BL03451___yvf 484 GGCGCTCATCTCGGCGCGGGAACGGCGGTCATTCC-CGGAAAGACAGTCG 532
BSNT_05176___ 533 G-GGCTTGGAGCATTGTC-GGCGCCGGCTCCGCGGTGATCCGTCCCATAC 580
| .|| |||||| .||.| ||.||.||..|.||.|||||.|....|||.|
BL03451___yvf 533 GACGC-TGGAGC-GTGACGGGAGCGGGGGCAGCCGTGATTCACGACATTC 580
BSNT_05176___ 581 CGGACAGGGTA-----ACGGCGGCCGGTGCTCCGGCACGCATCATTTCTT 625
|.|| || ||.||.|.|||.|..||.|||.|
BL03451___yvf 581 CTGA-----TAATTGCACCGCAGTCGGAGTCCCTGCAAG----------- 614
BSNT_05176___ 626 CCATTCAAACATCAAACAAAGGATGA 651
||..||||||.||
BL03451___yvf 615 ------AATGATCAAATAA------- 627
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