Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05182 and BL03446
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:18
# Commandline: needle
# -asequence dna-align/BSNT_05182___yveS.1.5803.seq
# -bsequence dna-align/BL03446___yveS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05182___yveS-BL03446___yveS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05182___yveS-BL03446___yveS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05182___yveS
# 2: BL03446___yveS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1176
# Identity: 779/1176 (66.2%)
# Similarity: 779/1176 (66.2%)
# Gaps: 195/1176 (16.6%)
# Score: 2505.0
#
#
#=======================================
BSNT_05182___ 1 ATGTCGTTACA--ATCGTTGAAAATCAATTTTGCAGAATGGCTGCTGCTA 48
|||.|.||.|| |.| ||||.||||||.|||||||||||||..||||.
BL03446___yve 1 ATGACCTTTCAGGAAC--TGAAGATCAATCTTGCAGAATGGCTTTTGCTC 48
BSNT_05182___ 49 AAGGTCAAATACCCGTCCCAATATTGGCTGGGAGCGGCAGATCAGCCGG- 97
|||||.|||||.||.||..|||||..|.|||||.| |||||
BL03446___yve 49 AAGGTGAAATATCCTTCTGAATATGTGATGGGAAC---------GCCGGG 89
BSNT_05182___ 98 -TAAAGGCCGC----AGCA---------CATCAGAAAAAAATCATACTGA 133
|.|||| ||| |.|| || |||||||||||||.||||
BL03446___yve 90 TTTAAGG-CGCTTTGAACAATATAAAGGCA--AGAAAAAAATCATTCTGA 136
BSNT_05182___ 134 CCCTGCTGCCGTCCCATGACAATTTGGGAGATCACGCAATTGCTTATGCC 183
|..|..|.|||||||||||.||||||||||||||.||.||||| ||
BL03446___yve 137 CTTTAATTCCGTCCCATGATAATTTGGGAGATCATGCGATTGC-----CC 181
BSNT_05182___ 184 -AGCAAG--GCA-TTTCTTGAGCAAGAATAC------CCGGACTTTGACA 223
.||||| ||| .|||.| ||||.|| ||.||.|||||
BL03446___yve 182 TGGCAAGCCGCACATTCAT-----AGAAAACGAGTTTCCCGATTTTGA-- 224
BSNT_05182___ 224 TCGTCGAGGTTGAT----------ATGAAGGACATTTACAAATCA-GCAA 262
|||.|| ||.||.||.||||||||| || || |
BL03446___yve 225 --------GTTAATTGAAATCGGCATTAACGATATTTACAAA-CATGC-A 264
BSNT_05182___ 263 AAAGC-CTGATCCGC-TCGCGCCATCCGGAGGATATGGTCTTTATCATCG 310
||||| ||.||.||| || |||||.||.|||||||||||.||.|||||||
BL03446___yve 265 AAAGCGCTCATGCGCATC-CGCCACCCCGAGGATATGGTATTCATCATCG 313
BSNT_05182___ 311 GCGGCGGAAACATGGGGGATATATACCGTTATGAGGAGTGGACGCGCCGC 360
||||.|||||||||||||||.|.|||||..|||||||.||||||.|.|||
BL03446___yve 314 GCGGAGGAAACATGGGGGATTTGTACCGCAATGAGGAATGGACGAGGCGC 363
BSNT_05182___ 361 TTCATCATTAAAACATTCCATGACTATCGGGTTGTCCAGCTTCCGGCAAC 410
|||||.||.|||||||||.|..|.|||....|.||||||||.||||||||
BL03446___yve 364 TTCATTATCAAAACATTCAAGCATTATAAAATCGTCCAGCTCCCGGCAAC 413
BSNT_05182___ 411 GGCTCATTTTTCTGACACG---------AAAAAAGGGCGCAAAGAGCTGA 451
.||.||.|||||.||.||| ||| ||||||||||
BL03446___yve 414 TGCGCACTTTTCCGAGACGCTCCGCGGCAAA---------AAAGAGCTGA 454
BSNT_05182___ 452 AACGGGCACAGAAAATTTATAATGCGCA-CCCCGGCCTGTTGCTGATGGC 500
||.||||..|.|||||.||.||..|.|| |.|||| |||||..|||||||
BL03446___yve 455 AAAGGGCGAAAAAAATCTACAACTCCCATCGCCGG-CTGTTCATGATGGC 503
BSNT_05182___ 501 GCGGGATGAAACAACGTATCAATTTATGAAACAGCA-TTTTCAAGAAAAA 549
|||.|||||.|||||.|||||||||||||||||||| ||.|||| |..||
BL03446___yve 504 GCGCGATGATACAACCTATCAATTTATGAAACAGCACTTCTCAA-ACCAA 552
BSNT_05182___ 550 ACAATTTTGAAGCAGCCGGACATGGTGCTGTATTTAGATAGAAGCAAGAC 599
||.|||.|.||||||||.||.||||||||.|||||| |||.||||
BL03446___yve 553 ACGATTGTAAAGCAGCCTGATATGGTGCTTTATTTA-----AAGAAAGA- 596
BSNT_05182___ 600 CCCCGCA----GAACGCGAAGGGGTTTATATGTGTTTGCGCGAGGATCAG 645
.|.||| |||.|.|||||.||.|...|.|||||..|.||||||.|.
BL03446___yve 597 -ACAGCAGTCTGAAAGAGAAGGTGTGTTGGTTTGTTTAAGGGAGGATAAA 645
BSNT_05182___ 646 GAAAGCGTGCTTCAGG-AGGAGCAGAGGAACCGAGTCAAAGCTGCGTTAT 694
||||||.|.| ||||| .|||..||.|.|| ||||||||
BL03446___yve 646 GAAAGCTTTC-TCAGGCCGGAAGAGCGTAA-------AAAGCTGC----- 682
BSNT_05182___ 695 TTG-AGGAATTCAGCGA-GA-----------TCAAACCCTTTACGACAAC 731
|| |||...||.|||| || ..|||.|.|||||.||.||
BL03446___yve 683 -TGAAGGCTGTCGGCGACGAGTATGGCGGTGCAAAAACTTTTACAACGAC 731
BSNT_05182___ 732 GATCGGGCGCCGGGTCAGCCGCGATACACGCGAACAAGAACTTGAAGC-G 780
||||||..|..||||||||||||...|.|||| |.|||.|..||||.| |
BL03446___yve 732 GATCGGCAGGAGGGTCAGCCGCGTGTCCCGCG-AGAAGGAGCTGAACCGG 780
BSNT_05182___ 781 CTGTGGTCTAAGCTGCAAAGCGCAGAAGCCGTCGTCACTGACAGGCTTCA 830
||.|||..|.|||||..|.||||.||.|.||||||.||.||||||||.||
BL03446___yve 781 CTTTGGGATCAGCTGAGAGGCGCGGAGGTCGTCGTGACAGACAGGCTGCA 830
BSNT_05182___ 831 TGGCATGATTTTTTGCGCGCTGACAGGAACGCCGTGTGTTGTCATTCGCT 880
.||||||||||||||.|||.|.||||||||||||||.||.||.||.||||
BL03446___yve 831 CGGCATGATTTTTTGTGCGATAACAGGAACGCCGTGCGTCGTGATCCGCT 880
BSNT_05182___ 881 CCTTTGACCATAAGGTGATGGAGGGCTATCAATGGCTTAAAGACATCCCG 930
|.|||||.|||||||||.|.||.||||.||..|||||.||||||.|.||
BL03446___yve 881 CTTTTGATCATAAGGTGCTTGAAGGCTTTCGCTGGCTGAAAGACGTTCC- 929
BSNT_05182___ 931 TTC-ATGAAGCTGATAGAACATCCGGA---GCCAGAGCGCGTAACAGCCG 976
||| ||||||||..|.|||.||||.|| |.||||| ||....|.||
BL03446___yve 930 TTCGATGAAGCTTGTGGAAAATCCCGATGCGGCAGAG---GTTCTCGGCG 976
BSNT_05182___ 977 CAGTCAATGAGCTTTTAACAAAA---------------GAAACACCCCGT 1011
||.||.|.|||||..| |||.| |..|.||||||
BL03446___yve 977 CAATCGAAGAGCTGGT--CAAGACCGGTGACTCGCATCGTGAGACCCCG- 1023
BSNT_05182___ 1012 GCAGGCTTTCCGAGAGATGTGTAT--------TTTAAAGGTCTGCGTGAC 1053
||| ||.|||...||| ||||| |||
BL03446___yve 1024 GCA---------AGGGATCATTATTTCGCAGATTTAA----------GAC 1054
BSNT_05182___ 1054 --AAAATCAGCGGTGAAGCGCAATGA 1077
|||||.|..|||||.|..||||||
BL03446___yve 1055 GGAAAATTATGGGTGATGTCCAATGA 1080
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