Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05186 and BL03443

See Amino acid alignment / Visit BSNT_05186 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_05186___yveP.1.5803.seq
#    -bsequence dna-align/BL03443___yveP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05186___yveP-BL03443___yveP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05186___yveP-BL03443___yveP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05186___yveP
# 2: BL03443___yveP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity:     780/1281 (60.9%)
# Similarity:   780/1281 (60.9%)
# Gaps:         246/1281 (19.2%)
# Score: 2133.5
# 
#
#=======================================

BSNT_05186___      1 ATGAAT------AGC---AG-CCAAAAGCGCGTGCTCCATGTTCTCAGCG     40
                     ||||||      |||   || |||||| ||.|||||.||..|..|.||||
BL03443___yve      1 ATGAATGACGGAAGCGTGAGACCAAAA-CGGGTGCTTCACATCGTAAGCG     49

BSNT_05186___     41 GCATGAACAGGGGCGGCGCGGAAACCATGGTAATGAATTTATATCGGAAG     90
                     |.||||||.|.|||||||||||.||.|||.|.||||||.||||.||..|.
BL03443___yve     50 GAATGAACCGCGGCGGCGCGGAGACGATGATTATGAATATATACCGCCAC     99

BSNT_05186___     91 ATGGACA-AAAGCAAAGTGCAATTTGATTTTTTAACGTATCGAAATGATC    139
                     |..|||| ...|||.| |.||||||||||||.|..|..|.||..|.||..
BL03443___yve    100 ACAGACAGGCGGCATA-TTCAATTTGATTTTATTTCCCACCGGGAAGAAA    148

BSNT_05186___    140 CGTGCGCTTATGATGAAGAGATTTTATCTTTA-----GGCGGGCGGCTTT    184
                     ||||||.|||.||....|||     |||.|.|     |||||.|||.|.|
BL03443___yve    149 CGTGCGATTACGACCCGGAG-----ATCATCACGCGCGGCGGCCGGGTGT    193

BSNT_05186___    185 TTTATGTCCCGAGCATTGGGCAAAG--------CAATCCCCTTACATTTG    226
                     |||||||.||||||||.||.|   |        |..||.|| ||||    
BL03443___yve    194 TTTATGTACCGAGCATCGGTC---GGTCGGGTCCTGTCGCC-TACA----    235

BSNT_05186___    227 TGAGGAATGTGAGAAACGCGATAAAA------------GAAAACGGGCCG    264
                              |.|.||||   ||.|.|            ||.||.||||| 
BL03443___yve    236 ---------TCAAAAAC---ATCAGAAGGATTTTGGTTGAGAAAGGGCC-    272

BSNT_05186___    265 TTCAG-CGCCGTTCATGCGCACACGGATTTCCAAACGGGTTTTATCGCCC    313
                     ||..| ||||||.||.||.||.||||||||.||.|||||.|||..|||..
BL03443___yve    273 TTATGCCGCCGTACACGCTCATACGGATTTTCAGACGGGCTTTGCCGCAT    322

BSNT_05186___    314 TTGCGGCAAGGCTCGCCGGAGTGCCGGTCAGGGTATGCCACTCCCACAAT    363
                     |.|||||.|||||||||||.||.|||||||||||.|||||.||||||||.
BL03443___yve    323 TGGCGGCCAGGCTCGCCGGCGTTCCGGTCAGGGTCTGCCATTCCCACAAC    372

BSNT_05186___    364 ACGTCTTGGAAG-------ACCGGCTTCAACTGGAAGGATCGCTTGCAGC    406
                     |||.|.||||||       .||||.||    ||   ||||...|.|||||
BL03443___yve    373 ACGGCCTGGAAGCCTAACCCCCGGTTT----TG---GGATACATGGCAGC    415

BSNT_05186___    407 TGCTCGTGTTCAGGCGGCTCATTTTGGCAAATGCGACAGCGCTGTGTGCC    456
                     |.||.|..|||.|.||..|.|||||..|.|.|||.||.||.|||||.||.
BL03443___yve    416 TTCTTGCATTCCGCCGCTTGATTTTCTCCAGTGCTACGGCTCTGTGCGCT    465

BSNT_05186___    457 TGCGGAGAGGATG-CGGGCAGGTTTTTATTTGG---ACAGTCCAATATGG    502
                     |||||..|.|||| ||||| |.||||||||.||   |.||   ||.||||
BL03443___yve    466 TGCGGCAAAGATGCCGGGC-GTTTTTTATTCGGCGCAAAG---AAGATGG    511

BSNT_05186___    503 AGCGGGA----GCGTGTTCACCTTCTTCCTAACGGGATTGACCTTGAGTT    548
                        |.||    ||| ||.||.|||.|.|..|||||||||||.|||||...
BL03443___yve    512 ---GTGAAAACGCG-GTCCATCTTTTGCAAAACGGGATTGAACTTGACCG    557

BSNT_05186___    549 GTTCGCCCCAAATGGGCAGGCGGCTG--------ATGAA---GAAAAAGC    587
                     |||     ||||...||...|||| |        |.|||   ||||||| 
BL03443___yve    558 GTT-----CAAAGAAGCGAACGGC-GTTTCAAAAACGAATGCGAAAAAG-    600

BSNT_05186___    588 AGCACGCGG---CATTGCAGCCG-ACCGGCTCATCATCGGCCATGTGGCC    633
                     ||| ..|||   ||..|.||.|| ||.||    |.|||||.|||||.|.|
BL03443___yve    601 AGC-TTCGGTATCAAAGAAGACGCACTGG----TGATCGGGCATGTCGGC    645

BSNT_05186___    634 CGGTTTCATGAAGTGAAAAACCACGCGTTCCTGTTGAAACTTGCCGCACA    683
                     ||.|||..||||..|||||||||||||||.|||.|....||||||||..|
BL03443___yve    646 CGTTTTTTTGAACAGAAAAACCACGCGTTTCTGCTCGGGCTTGCCGCTTA    695

BSNT_05186___    684 TCTCAAAGAAA--GAGGCGTTCGCTTTCA---GCTCGTTCTGGCGGGAGA    728
                     | |..||||||  | |||.|.|..|||||   |.| ||||  ||.||.||
BL03443___yve    696 T-TGCAAGAAATCG-GGCATACCTTTTCAAGCGGT-GTTC--GCAGGTGA    740

BSNT_05186___    729 CGGGCCGTTGCGCGGGGAGATAGA-GGAGG----AGGCGCGGCAGCAGAA    773
                     |||.|||.|||||    |||.||| |||.|    ||.|||          
BL03443___yve    741 CGGTCCGCTGCGC----AGACAGATGGAAGAAAAAGCCGC----------    776

BSNT_05186___    774 TTTGCTATC--------AGACG---TCCTCTTTTTAGGC-ACG--GAAGA    809
                       ||||.||        |||||   |.||.|||.|.||| .||  |||||
BL03443___yve    777 --TGCTCTCGGTGTAAAAGACGACATTCTGTTTCTCGGCGTCGTCGAAGA    824

BSNT_05186___    810 ACGGATCCATGAACTGATGCGAACATTCGATGTATTTGTCATGCCGTCTC    859
                        .||||..|..||.||||...||||.|||||||||||||||||||||.
BL03443___yve    825 ---TATCCCGGCTCTCATGCAGGCATTTGATGTATTTGTCATGCCGTCTT    871

BSNT_05186___    860 TGTACGAAGGCTTGCCGGTTGTGCTTGTGGAAGCGCAGGCGTCGGGGCTT    909
                     |||..|||||..|.||..|.||.||.||.||||||||.|||||.|||||.
BL03443___yve    872 TGTTTGAAGGGCTACCCCTCGTACTGGTCGAAGCGCAAGCGTCAGGGCTC    921

BSNT_05186___    910 CCATGCATCATTTCAGACAGCATTACAGAAAAAGTCGACGCCGGTCTCGG    959
                     ||.|||||..|.|||||||.||||||.|||.||..|||....||.|||||
BL03443___yve    922 CCCTGCATTGTATCAGACAACATTACGGAAGAAACCGATTTGGGACTCGG    971

BSNT_05186___    960 GCT-------TGTCACAAGATTAA------GTCTTT----------CTGA    986
                     .||       .|||.| ||.||||      || |||          ||||
BL03443___yve    972 CCTGCTGCAACGTCTC-AGCTTAAATGCCGGT-TTTGAACGGTGGGCTGA   1019

BSNT_05186___    987 GCCGATCAG-CGT----CTGGGCTGAAA---CCATTGCAAGGGCGGCCGC   1028
                     |...||||| |||    ||..||.||||   ||  ||||.||.|||    
BL03443___yve   1020 GGATATCAGCCGTGCTGCTCAGCCGAAAAAGCC--TGCATGGCCGG----   1063

BSNT_05186___   1029 CGCAGGCAGGCCGAAGCGTGAGTTCATCAACGAAACACTCGCTCAACTTG   1078
                                 .||..|.|||           ||..||.|||.|....|
BL03443___yve   1064 ------------AAATAGAGAG-----------AAGCCTTGCTGAGAGAG   1090

BSNT_05186___   1079 GCTACGATGC-ACAGCAAAATGTAGGAGCG-CTGCTG--AATGTATACAA   1124
                     ||||.||||| |.||||||  .|.||.|.| |||.||  .||.|||.|||
BL03443___yve   1091 GCTATGATGCAAAAGCAAA--TTTGGCGAGACTGATGGACATCTATTCAA   1138

BSNT_05186___   1125 CATCAGCACGGAAAAGGACCATGACCGATGA   1155
                     ..||.||| |.|.||||||..|||       
BL03443___yve   1139 TCTCCGCA-GCAGAAGGACAGTGA-------   1161


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