Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05186 and BL03443
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:19
# Commandline: needle
# -asequence dna-align/BSNT_05186___yveP.1.5803.seq
# -bsequence dna-align/BL03443___yveP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05186___yveP-BL03443___yveP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05186___yveP-BL03443___yveP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05186___yveP
# 2: BL03443___yveP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity: 780/1281 (60.9%)
# Similarity: 780/1281 (60.9%)
# Gaps: 246/1281 (19.2%)
# Score: 2133.5
#
#
#=======================================
BSNT_05186___ 1 ATGAAT------AGC---AG-CCAAAAGCGCGTGCTCCATGTTCTCAGCG 40
|||||| ||| || |||||| ||.|||||.||..|..|.||||
BL03443___yve 1 ATGAATGACGGAAGCGTGAGACCAAAA-CGGGTGCTTCACATCGTAAGCG 49
BSNT_05186___ 41 GCATGAACAGGGGCGGCGCGGAAACCATGGTAATGAATTTATATCGGAAG 90
|.||||||.|.|||||||||||.||.|||.|.||||||.||||.||..|.
BL03443___yve 50 GAATGAACCGCGGCGGCGCGGAGACGATGATTATGAATATATACCGCCAC 99
BSNT_05186___ 91 ATGGACA-AAAGCAAAGTGCAATTTGATTTTTTAACGTATCGAAATGATC 139
|..|||| ...|||.| |.||||||||||||.|..|..|.||..|.||..
BL03443___yve 100 ACAGACAGGCGGCATA-TTCAATTTGATTTTATTTCCCACCGGGAAGAAA 148
BSNT_05186___ 140 CGTGCGCTTATGATGAAGAGATTTTATCTTTA-----GGCGGGCGGCTTT 184
||||||.|||.||....||| |||.|.| |||||.|||.|.|
BL03443___yve 149 CGTGCGATTACGACCCGGAG-----ATCATCACGCGCGGCGGCCGGGTGT 193
BSNT_05186___ 185 TTTATGTCCCGAGCATTGGGCAAAG--------CAATCCCCTTACATTTG 226
|||||||.||||||||.||.| | |..||.|| ||||
BL03443___yve 194 TTTATGTACCGAGCATCGGTC---GGTCGGGTCCTGTCGCC-TACA---- 235
BSNT_05186___ 227 TGAGGAATGTGAGAAACGCGATAAAA------------GAAAACGGGCCG 264
|.|.|||| ||.|.| ||.||.|||||
BL03443___yve 236 ---------TCAAAAAC---ATCAGAAGGATTTTGGTTGAGAAAGGGCC- 272
BSNT_05186___ 265 TTCAG-CGCCGTTCATGCGCACACGGATTTCCAAACGGGTTTTATCGCCC 313
||..| ||||||.||.||.||.||||||||.||.|||||.|||..|||..
BL03443___yve 273 TTATGCCGCCGTACACGCTCATACGGATTTTCAGACGGGCTTTGCCGCAT 322
BSNT_05186___ 314 TTGCGGCAAGGCTCGCCGGAGTGCCGGTCAGGGTATGCCACTCCCACAAT 363
|.|||||.|||||||||||.||.|||||||||||.|||||.||||||||.
BL03443___yve 323 TGGCGGCCAGGCTCGCCGGCGTTCCGGTCAGGGTCTGCCATTCCCACAAC 372
BSNT_05186___ 364 ACGTCTTGGAAG-------ACCGGCTTCAACTGGAAGGATCGCTTGCAGC 406
|||.|.|||||| .||||.|| || ||||...|.|||||
BL03443___yve 373 ACGGCCTGGAAGCCTAACCCCCGGTTT----TG---GGATACATGGCAGC 415
BSNT_05186___ 407 TGCTCGTGTTCAGGCGGCTCATTTTGGCAAATGCGACAGCGCTGTGTGCC 456
|.||.|..|||.|.||..|.|||||..|.|.|||.||.||.|||||.||.
BL03443___yve 416 TTCTTGCATTCCGCCGCTTGATTTTCTCCAGTGCTACGGCTCTGTGCGCT 465
BSNT_05186___ 457 TGCGGAGAGGATG-CGGGCAGGTTTTTATTTGG---ACAGTCCAATATGG 502
|||||..|.|||| ||||| |.||||||||.|| |.|| ||.||||
BL03443___yve 466 TGCGGCAAAGATGCCGGGC-GTTTTTTATTCGGCGCAAAG---AAGATGG 511
BSNT_05186___ 503 AGCGGGA----GCGTGTTCACCTTCTTCCTAACGGGATTGACCTTGAGTT 548
|.|| ||| ||.||.|||.|.|..|||||||||||.|||||...
BL03443___yve 512 ---GTGAAAACGCG-GTCCATCTTTTGCAAAACGGGATTGAACTTGACCG 557
BSNT_05186___ 549 GTTCGCCCCAAATGGGCAGGCGGCTG--------ATGAA---GAAAAAGC 587
||| ||||...||...|||| | |.||| |||||||
BL03443___yve 558 GTT-----CAAAGAAGCGAACGGC-GTTTCAAAAACGAATGCGAAAAAG- 600
BSNT_05186___ 588 AGCACGCGG---CATTGCAGCCG-ACCGGCTCATCATCGGCCATGTGGCC 633
||| ..||| ||..|.||.|| ||.|| |.|||||.|||||.|.|
BL03443___yve 601 AGC-TTCGGTATCAAAGAAGACGCACTGG----TGATCGGGCATGTCGGC 645
BSNT_05186___ 634 CGGTTTCATGAAGTGAAAAACCACGCGTTCCTGTTGAAACTTGCCGCACA 683
||.|||..||||..|||||||||||||||.|||.|....||||||||..|
BL03443___yve 646 CGTTTTTTTGAACAGAAAAACCACGCGTTTCTGCTCGGGCTTGCCGCTTA 695
BSNT_05186___ 684 TCTCAAAGAAA--GAGGCGTTCGCTTTCA---GCTCGTTCTGGCGGGAGA 728
| |..|||||| | |||.|.|..||||| |.| |||| ||.||.||
BL03443___yve 696 T-TGCAAGAAATCG-GGCATACCTTTTCAAGCGGT-GTTC--GCAGGTGA 740
BSNT_05186___ 729 CGGGCCGTTGCGCGGGGAGATAGA-GGAGG----AGGCGCGGCAGCAGAA 773
|||.|||.||||| |||.||| |||.| ||.|||
BL03443___yve 741 CGGTCCGCTGCGC----AGACAGATGGAAGAAAAAGCCGC---------- 776
BSNT_05186___ 774 TTTGCTATC--------AGACG---TCCTCTTTTTAGGC-ACG--GAAGA 809
||||.|| ||||| |.||.|||.|.||| .|| |||||
BL03443___yve 777 --TGCTCTCGGTGTAAAAGACGACATTCTGTTTCTCGGCGTCGTCGAAGA 824
BSNT_05186___ 810 ACGGATCCATGAACTGATGCGAACATTCGATGTATTTGTCATGCCGTCTC 859
.||||..|..||.||||...||||.|||||||||||||||||||||.
BL03443___yve 825 ---TATCCCGGCTCTCATGCAGGCATTTGATGTATTTGTCATGCCGTCTT 871
BSNT_05186___ 860 TGTACGAAGGCTTGCCGGTTGTGCTTGTGGAAGCGCAGGCGTCGGGGCTT 909
|||..|||||..|.||..|.||.||.||.||||||||.|||||.|||||.
BL03443___yve 872 TGTTTGAAGGGCTACCCCTCGTACTGGTCGAAGCGCAAGCGTCAGGGCTC 921
BSNT_05186___ 910 CCATGCATCATTTCAGACAGCATTACAGAAAAAGTCGACGCCGGTCTCGG 959
||.|||||..|.|||||||.||||||.|||.||..|||....||.|||||
BL03443___yve 922 CCCTGCATTGTATCAGACAACATTACGGAAGAAACCGATTTGGGACTCGG 971
BSNT_05186___ 960 GCT-------TGTCACAAGATTAA------GTCTTT----------CTGA 986
.|| .|||.| ||.|||| || ||| ||||
BL03443___yve 972 CCTGCTGCAACGTCTC-AGCTTAAATGCCGGT-TTTGAACGGTGGGCTGA 1019
BSNT_05186___ 987 GCCGATCAG-CGT----CTGGGCTGAAA---CCATTGCAAGGGCGGCCGC 1028
|...||||| ||| ||..||.|||| || ||||.||.|||
BL03443___yve 1020 GGATATCAGCCGTGCTGCTCAGCCGAAAAAGCC--TGCATGGCCGG---- 1063
BSNT_05186___ 1029 CGCAGGCAGGCCGAAGCGTGAGTTCATCAACGAAACACTCGCTCAACTTG 1078
.||..|.||| ||..||.|||.|....|
BL03443___yve 1064 ------------AAATAGAGAG-----------AAGCCTTGCTGAGAGAG 1090
BSNT_05186___ 1079 GCTACGATGC-ACAGCAAAATGTAGGAGCG-CTGCTG--AATGTATACAA 1124
||||.||||| |.|||||| .|.||.|.| |||.|| .||.|||.|||
BL03443___yve 1091 GCTATGATGCAAAAGCAAA--TTTGGCGAGACTGATGGACATCTATTCAA 1138
BSNT_05186___ 1125 CATCAGCACGGAAAAGGACCATGACCGATGA 1155
..||.||| |.|.||||||..|||
BL03443___yve 1139 TCTCCGCA-GCAGAAGGACAGTGA------- 1161
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