Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05188 and BL03442

See Amino acid alignment / Visit BSNT_05188 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_05188___yveO.1.5803.seq
#    -bsequence dna-align/BL03442___yveO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05188___yveO-BL03442___yveO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05188___yveO-BL03442___yveO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05188___yveO
# 2: BL03442___yveO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 868
# Identity:     612/868 (70.5%)
# Similarity:   612/868 (70.5%)
# Gaps:          56/868 ( 6.5%)
# Score: 2033.0
# 
#
#=======================================

BSNT_05188___      1 ATGAACTCAGG---------ACCGAAAGTTTCTGTCATTATGGGCATTTA     41
                     ||||   .|||         .|||||||||||||||||||||||..|.||
BL03442___yve      1 ATGA---TAGGGGGTCAAAAGCCGAAAGTTTCTGTCATTATGGGAGTCTA     47

BSNT_05188___     42 TAATTGCGAACGCACTTTGGCAGAAAGCATAGAATCCATTCTCAGCCAAT     91
                     .|||||.||...|||..|.|||||.|||||.||.||.|||.|.|..|||.
BL03442___yve     48 CAATTGTGAGAACACGATCGCAGAGAGCATCGAGTCAATTTTAAATCAAA     97

BSNT_05188___     92 CCTATAAAAATTGGGAGCTGATTTTGTGCGATGATGCGTCAACAGACGGC    141
                     ||||||||||||||||.||||||.|.|||||.|||||.||.||||||||.
BL03442___yve     98 CCTATAAAAATTGGGAACTGATTATATGCGACGATGCTTCGACAGACGGG    147

BSNT_05188___    142 AC----GCTCCGTATCGCGAAGCAGTATGCCGCTCATTACAGC-GACTGC    186
                     ||    ||    |.|.||.|.||.||||||||.||||||| || ||....
BL03442___yve    148 ACATATGC----TGTTGCCAGGCGGTATGCCGATCATTAC-GCAGATAAG    192

BSNT_05188___    187 ATCAAACTGATTCAAAACAAAACAAATAAGCGGCTTGCCGCATCATTAAA    236
                     ||.||.|||||..|||||.|.|..|||.|||||||.||.||.||.|||||
BL03442___yve    193 ATTAAGCTGATCAAAAACGAGAAGAATCAGCGGCTGGCTGCCTCGTTAAA    242

BSNT_05188___    237 TCATTGTCTTTCGCATGCGACAGGCG---ATTATATCGCACGTCAGGACG    283
                     .||.||||  ||..||.|| |.||||   |.||||||||.||.|||||||
BL03442___yve    243 CCACTGTC--TCCAATACG-CCGGCGGGAAATATATCGCGCGCCAGGACG    289

BSNT_05188___    284 GAGATGACCTTTCGTTTCCGCGCCGTCTGGAAAAGCAGGTCGCGTTTTTA    333
                     ||||||||.|.||.||.|||.|.||..|.||||||||||||||||||||.
BL03442___yve    290 GAGATGACATCTCTTTGCCGAGGCGGTTTGAAAAGCAGGTCGCGTTTTTG    339

BSNT_05188___    334 GAAAAGCACCGACACTATCAGGTGGTTGGCACCGGCATGCTTGTGTTTGA    383
                     |||..|||....||.|||||.||.||.||.|.|||||||.|.|..||.||
BL03442___yve    340 GAATCGCAATCTCATTATCATGTCGTCGGAAGCGGCATGATGGCCTTCGA    389

BSNT_05188___    384 TGAATTTGGCGTAAGAGGCACCCGCATTCTGCCTTCTGTTCCGGAGCCGG    433
                     .|||...||..|.||||||..|.|.||.||.|||||...|||.||.|||.
BL03442___yve    390 CGAAAACGGGATTAGAGGCGTCAGAATGCTTCCTTCCTCTCCAGAACCGA    439

BSNT_05188___    434 GCATCATGGCAAAAGGGACTCCATTTTGCCACGGCACGATTATGATGAGA    483
                     |.||||||||.||||||||.||.||||||||.|..|||||.|||||||||
BL03442___yve    440 GAATCATGGCGAAAGGGACGCCGTTTTGCCATGCGACGATCATGATGAGA    489

BSNT_05188___    484 G-CGA-GTGCCTACCGCACGCTGAAAGGCTA-CCTGTCGGTGCGGCGGAC    530
                     | ||| ||  ||||....|||||.|.||||| |..||||| .|||.|.||
BL03442___yve    490 GCCGACGT--CTACGAGGCGCTGGACGGCTATCGGGTCGG-CCGGAGAAC    536

BSNT_05188___    531 GAGACGAATGGAAGATATTGATTTGTGGCTTCGCTTTTTTGAAGAGGGCT    580
                     .|||.|.|||||||||.|.||||||||||||||.||||||||.|.|||||
BL03442___yve    537 AAGAAGGATGGAAGATGTCGATTTGTGGCTTCGTTTTTTTGAGGCGGGCT    586

BSNT_05188___    581 TCAGGGGCTATAATCTTCAGGAAGCCTTGTATAAAGTGAGGGAAGAC--A    628
                     |||.||||||.||.||||||||||||||.||.|||||.|||||||||  |
BL03442___yve    587 TCACGGGCTACAACCTTCAGGAAGCCTTATACAAAGTAAGGGAAGACGAA    636

BSNT_05188___    629 GCGATGCATTCAAACGG----CGGTCATTTACGTATTCAATCGACAATGC    674
                     .||  ||.||.|||.||    .|.|||..|||    ||.||.||.|||||
BL03442___yve    637 TCG--GCGTTTAAAAGGAGAAAGCTCAGCTAC----TCGATTGATAATGC    680

BSNT_05188___    675 CATTCTTGTCTATCAGGCGTGCAGACGCTTGAAGCTTCCTTTATCTGATT    724
                     ..||.|.||||.|...||.||||||||..|||||||.||..||||.||.|
BL03442___yve    681 GTTTATCGTCTTTGCCGCCTGCAGACGGCTGAAGCTGCCGCTATCGGACT    730

BSNT_05188___    725 ACATATATATCGCGAAACCGTTAATCCGCGCCTTTATGCCTGCAGCC---    771
                     |.||.||||....||||||..|.|||.|.|...||||||||    ||   
BL03442___yve    731 ATATTTATACAATGAAACCCATCATCAGGGGGCTTATGCCT----CCTTT    776

BSNT_05188___    772 -GTGATGGATCGCTACCATAAAAAAAGAGTGATGAACCAACAGGAAGGGC    820
                      .|.|||.|..|.||.|||||||.||||.|||||||..||...|.||||.
BL03442___yve    777 TATCATGAACAGATATCATAAAAGAAGATTGATGAATGAAGGCGGAGGGG    826

BSNT_05188___    821 TTGTCAAGCATGAATAG-    837
                     |.||.||.||||||| | 
BL03442___yve    827 TCGTAAAACATGAAT-GA    843


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05188 and BL03442

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
