Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05190 and BL03441
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:19
# Commandline: needle
# -asequence dna-align/BSNT_05190___yveN.1.5803.seq
# -bsequence dna-align/BL03441___yveN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05190___yveN-BL03441___yveN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05190___yveN-BL03441___yveN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05190___yveN
# 2: BL03441___yveN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 796/1232 (64.6%)
# Similarity: 796/1232 (64.6%)
# Gaps: 169/1232 (13.7%)
# Score: 2305.0
#
#
#=======================================
BSNT_05190___ 1 ATGACGAAAAAGATATTGTTTTGCGCGACTGTTGATTATCATTTTAAGGC 50
|||||.|.||.|.|.|||||||||||.|||||.|||||.|||||.|||||
BL03441___yve 1 ATGACAAGAACGGTTTTGTTTTGCGCTACTGTGGATTACCATTTCAAGGC 50
BSNT_05190___ 51 CTTTCACCTCCCTTATTTTAAATGGTTCAAACAAATGGGCTGGGAGGTTC 100
|||.||||||||.|||||.||||||||.|||.|...|||.|||.|.||||
BL03441___yve 51 CTTCCACCTCCCGTATTTAAAATGGTTTAAAGAGCAGGGGTGGAATGTTC 100
BSNT_05190___ 101 ATGTCGCCGCGAACGGACAAACCAAGCTGCCGTATGTGGATGAGAAATTC 150
||.|||||||.||.|||.|.|..|..|||||.|||...|||.|.|||||
BL03441___yve 101 ATATCGCCGCAAAAGGAGATATGACACTGCCCTATACAGATAAAAAATT- 149
BSNT_05190___ 151 TCCATCCCGAT-TCG----CAGG---TCACCTTT---TGCCCCTCAG-AA 188
.||| ||| |||| ||.||||| ||| .|| ||
BL03441___yve 150 -------TGATATCGATATCAGGCGTTCTCCTTTGAATGC----AAGCAA 188
BSNT_05190___ 189 CCTGGCCGTTTATAGGCAGCTGAAGAAAGTGATCGACACCTATGAA---- 234
..|.||.|..|||.||.|||||..|..|.|.||.||| |||
BL03441___yve 189 TATCGCTGCCTATCGGGAGCTGGCGCGAATCATTGAC------GAACACC 232
BSNT_05190___ 235 --TACGACATTGTCCATTGCCATACACCGGTCGGCGGCGTTCTCGCCAGA 282
|||..|||..|.||||||||.||.|||.|.||.|||||.||.||.||.
BL03441___yve 233 GGTACAGCATCATTCATTGCCACACGCCGATGGGAGGCGTGCTGGCAAGG 282
BSNT_05190___ 283 CTGGCGGCGAGGCAGGCACGGCG----GCACGGAACAAAGGTGCTGTATA 328
||.|||||..||.| ||.|.| | |.||.||.||.|||.|.||||
BL03441___yve 283 CTTGCGGCCCGGAA---ACAGAGAAAAG-AGGGGACGAAAGTGATCTATA 328
BSNT_05190___ 329 CAGCGCACGGATTTCACTTCTGCAAAGGAGCACCAATGAAAAATTGGCTT 378
|.||.|||||.||.|||||.|||.||||.||.||..|.|||||||||||.
BL03441___yve 329 CCGCTCACGGTTTCCACTTTTGCCAAGGTGCTCCTTTAAAAAATTGGCTG 378
BSNT_05190___ 379 CTTTACTATCCGGTCGAGAAATGGCTTTCAGCATATACGGACTGCCTGAT 428
||.||.||||||.|.||.|||.||||.||.||.|..||.||.||||||||
BL03441___yve 379 CTGTATTATCCGATTGAAAAAGGGCTGTCCGCTTTGACCGATTGCCTGAT 428
BSNT_05190___ 429 TACGATTAATGAAGAGGATTATAAACG----GGCGAAAGGACTT---CAA 471
||||||.||||||||.|||| .|| .||.||||| ||| .||
BL03441___yve 429 TACGATCAATGAAGAAGATT----TCGTCCTTGCAAAAGG-CTTGCGAAA 473
BSNT_05190___ 472 AG-GCCGGGCGGAAGGACGCAGAAAATTCACGGCATTGGCGTCAACACCG 520
|| ||.|.|| |||.|.|||||.|||||.||.||||||.|.||.|
BL03441___yve 474 AGCGCTGCGC------ACGGAAAAAATCCACGGGATCGGCGTCGATACGG 517
BSNT_05190___ 521 AGCGTTTCCGGCCTGTCAGTCCGATAGAGCAGCAAAAA-----CTCAGAG 565
||||.||.|..|||||||||...|.|||| |||| ||||| |
BL03441___yve 518 AGCGGTTTCATCCTGTCAGTGAAACAGAG-----AAAATGCTGCTCAG-G 561
BSNT_05190___ 566 AAAA-ACACGGGTTCCGTAAAGATGATTTTATATTGGTTTATCCGGCTGA 614
|||| |.||||.|||....||||.||.|||||..|..|.|||||.||.||
BL03441___yve 562 AAAACATACGGTTTCAAAGAAGACGACTTTATCCTCATATATCCCGCGGA 611
BSNT_05190___ 615 GCTCAATCTGAACAAAAACCAGAAGC--AGTTAATAGAAGCCGCAGCCTT 662
|||.||...|||.||||||||| || .|.|.||.|||.|.||.|| |
BL03441___yve 612 GCTGAACGCGAATAAAAACCAG--GCCTTGCTCATCGAAACGGCGGC--T 657
BSNT_05190___ 663 GC--TAAAAGAAAAAATTCCTTCGCTCCG-CCTT-------GTGTTTGCC 702
|| |||||||.|.| ||.||| .||| ||||||| |
BL03441___yve 658 GCTTTAAAAGACAGA--------GCCCCGAACTTAAAGGTCGTGTTTG-C 698
BSNT_05190___ 703 GGGGAAGGGGCA-ATGGAACAAACGTATC-AAACGTTA-GCTG----AAA 745
.||.||.||||| |||||.||||..||.| ||| |.| |||| |||
BL03441___yve 699 AGGAAAAGGGCAGATGGAGCAAAAATACCGAAA--TCACGCTGAACAAAA 746
BSNT_05190___ 746 AG------CTTGGTGCCTCCGCCAATGTC-TGTTTTTACGGCTTTTGCAG 788
|| |||.| ||| ||| || |||..|||.|||...|.
BL03441___yve 747 AGGCGTTTCTTCG---CTC-------GTCATG-TTTGCCGGTTTTCAAAA 785
BSNT_05190___ 789 CGACATACATAAGCTGATTCAGCTTGCGGATGTATCTGTCGCATCCAGCA 838
..||||.||..|...||||||||||||.||.||.||||||||.||.||||
BL03441___yve 786 AAACATCCACGAATGGATTCAGCTTGCAGACGTGTCTGTCGCCTCAAGCA 835
BSNT_05190___ 839 TTAGAGAGGGCCTCGGCATGAATGTGCTTGAGGGAATGGCGGCAGAAAAA 888
|.||.||.||.|||||||||||..|.|||||.|||||||||.|||.|||.
BL03441___yve 836 TCAGGGAAGGGCTCGGCATGAACCTCCTTGAAGGAATGGCGTCAGGAAAG 885
BSNT_05190___ 889 CCGGCGATCGCCACAGATAATCGCGGGCATCGGGAAATCATTCGCGACGG 938
||.||..|.||..|.||.||.|||||.||.||||||.||||||..||.||
BL03441___yve 886 CCCGCCGTTGCAGCGGACAACCGCGGACACCGGGAAGTCATTCAAGAGGG 935
BSNT_05190___ 939 AGAAAACGGTTTTCTGATCAAAATC-----GGTGACAGTGCTG---CTTT 980
.|..|||||.|||.||.| || ||.||| ||.| |.||
BL03441___yve 936 CGTGAACGGATTTTTGGT-----TCCGCAGGGAGAC---GCCGGAACGTT 977
BSNT_05190___ 981 TGCCCGCCGG--ATTGAACAGCTTTACCATAAGCCGGAGCTCTGCCG--- 1025
...|..|||| |||| |||||.||||.|..||| ..||.|| ||
BL03441___yve 978 CAGCGACCGGATATTG--CAGCTGTACCGTCTGCC--TTCTTTG-CGAAA 1022
BSNT_05190___ 1026 AAAGCTGGGACAGGAAGGCCGAAAAACAGCCTTG-CGC-TTCTCGGAGGC 1073
||||.|||||.|.|..||..||..||||||| | ||| ||.||..||..
BL03441___yve 1023 AAAGATGGGAGACGCGGGGAGACGAACAGCC--GCCGCTTTTTCCCAGCA 1070
BSNT_05190___ 1074 GCGAACGGTGGAAGAAATGGCAGATATTTATTCCGCGTACATGGATATGG 1123
|||.||.||..||||||||||.|..|||||.||..|.|..|||||||..|
BL03441___yve 1071 GCGCACCGTCAAAGAAATGGCGGGCATTTACTCTTCCTTTATGGATAACG 1120
BSNT_05190___ 1124 A-----TATAAAGGA----GAAAAGCGTATGA 1146
| |..|||||| |||| |.||||
BL03441___yve 1121 AAACAGTTGAAAGGAGGCTGAAA---GGATGA 1149
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