Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05190 and BL03441

See Amino acid alignment / Visit BSNT_05190 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_05190___yveN.1.5803.seq
#    -bsequence dna-align/BL03441___yveN.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05190___yveN-BL03441___yveN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05190___yveN-BL03441___yveN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05190___yveN
# 2: BL03441___yveN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity:     796/1232 (64.6%)
# Similarity:   796/1232 (64.6%)
# Gaps:         169/1232 (13.7%)
# Score: 2305.0
# 
#
#=======================================

BSNT_05190___      1 ATGACGAAAAAGATATTGTTTTGCGCGACTGTTGATTATCATTTTAAGGC     50
                     |||||.|.||.|.|.|||||||||||.|||||.|||||.|||||.|||||
BL03441___yve      1 ATGACAAGAACGGTTTTGTTTTGCGCTACTGTGGATTACCATTTCAAGGC     50

BSNT_05190___     51 CTTTCACCTCCCTTATTTTAAATGGTTCAAACAAATGGGCTGGGAGGTTC    100
                     |||.||||||||.|||||.||||||||.|||.|...|||.|||.|.||||
BL03441___yve     51 CTTCCACCTCCCGTATTTAAAATGGTTTAAAGAGCAGGGGTGGAATGTTC    100

BSNT_05190___    101 ATGTCGCCGCGAACGGACAAACCAAGCTGCCGTATGTGGATGAGAAATTC    150
                     ||.|||||||.||.|||.|.|..|..|||||.|||...|||.|.||||| 
BL03441___yve    101 ATATCGCCGCAAAAGGAGATATGACACTGCCCTATACAGATAAAAAATT-    149

BSNT_05190___    151 TCCATCCCGAT-TCG----CAGG---TCACCTTT---TGCCCCTCAG-AA    188
                            .||| |||    ||||   ||.|||||   |||    .|| ||
BL03441___yve    150 -------TGATATCGATATCAGGCGTTCTCCTTTGAATGC----AAGCAA    188

BSNT_05190___    189 CCTGGCCGTTTATAGGCAGCTGAAGAAAGTGATCGACACCTATGAA----    234
                     ..|.||.|..|||.||.|||||..|..|.|.||.|||      |||    
BL03441___yve    189 TATCGCTGCCTATCGGGAGCTGGCGCGAATCATTGAC------GAACACC    232

BSNT_05190___    235 --TACGACATTGTCCATTGCCATACACCGGTCGGCGGCGTTCTCGCCAGA    282
                       |||..|||..|.||||||||.||.|||.|.||.|||||.||.||.||.
BL03441___yve    233 GGTACAGCATCATTCATTGCCACACGCCGATGGGAGGCGTGCTGGCAAGG    282

BSNT_05190___    283 CTGGCGGCGAGGCAGGCACGGCG----GCACGGAACAAAGGTGCTGTATA    328
                     ||.|||||..||.|   ||.|.|    | |.||.||.||.|||.|.||||
BL03441___yve    283 CTTGCGGCCCGGAA---ACAGAGAAAAG-AGGGGACGAAAGTGATCTATA    328

BSNT_05190___    329 CAGCGCACGGATTTCACTTCTGCAAAGGAGCACCAATGAAAAATTGGCTT    378
                     |.||.|||||.||.|||||.|||.||||.||.||..|.|||||||||||.
BL03441___yve    329 CCGCTCACGGTTTCCACTTTTGCCAAGGTGCTCCTTTAAAAAATTGGCTG    378

BSNT_05190___    379 CTTTACTATCCGGTCGAGAAATGGCTTTCAGCATATACGGACTGCCTGAT    428
                     ||.||.||||||.|.||.|||.||||.||.||.|..||.||.||||||||
BL03441___yve    379 CTGTATTATCCGATTGAAAAAGGGCTGTCCGCTTTGACCGATTGCCTGAT    428

BSNT_05190___    429 TACGATTAATGAAGAGGATTATAAACG----GGCGAAAGGACTT---CAA    471
                     ||||||.||||||||.||||    .||    .||.||||| |||   .||
BL03441___yve    429 TACGATCAATGAAGAAGATT----TCGTCCTTGCAAAAGG-CTTGCGAAA    473

BSNT_05190___    472 AG-GCCGGGCGGAAGGACGCAGAAAATTCACGGCATTGGCGTCAACACCG    520
                     || ||.|.||      |||.|.|||||.|||||.||.||||||.|.||.|
BL03441___yve    474 AGCGCTGCGC------ACGGAAAAAATCCACGGGATCGGCGTCGATACGG    517

BSNT_05190___    521 AGCGTTTCCGGCCTGTCAGTCCGATAGAGCAGCAAAAA-----CTCAGAG    565
                     ||||.||.|..|||||||||...|.||||     ||||     ||||| |
BL03441___yve    518 AGCGGTTTCATCCTGTCAGTGAAACAGAG-----AAAATGCTGCTCAG-G    561

BSNT_05190___    566 AAAA-ACACGGGTTCCGTAAAGATGATTTTATATTGGTTTATCCGGCTGA    614
                     |||| |.||||.|||....||||.||.|||||..|..|.|||||.||.||
BL03441___yve    562 AAAACATACGGTTTCAAAGAAGACGACTTTATCCTCATATATCCCGCGGA    611

BSNT_05190___    615 GCTCAATCTGAACAAAAACCAGAAGC--AGTTAATAGAAGCCGCAGCCTT    662
                     |||.||...|||.|||||||||  ||  .|.|.||.|||.|.||.||  |
BL03441___yve    612 GCTGAACGCGAATAAAAACCAG--GCCTTGCTCATCGAAACGGCGGC--T    657

BSNT_05190___    663 GC--TAAAAGAAAAAATTCCTTCGCTCCG-CCTT-------GTGTTTGCC    702
                     ||  |||||||.|.|        ||.||| .|||       ||||||| |
BL03441___yve    658 GCTTTAAAAGACAGA--------GCCCCGAACTTAAAGGTCGTGTTTG-C    698

BSNT_05190___    703 GGGGAAGGGGCA-ATGGAACAAACGTATC-AAACGTTA-GCTG----AAA    745
                     .||.||.||||| |||||.||||..||.| |||  |.| ||||    |||
BL03441___yve    699 AGGAAAAGGGCAGATGGAGCAAAAATACCGAAA--TCACGCTGAACAAAA    746

BSNT_05190___    746 AG------CTTGGTGCCTCCGCCAATGTC-TGTTTTTACGGCTTTTGCAG    788
                     ||      |||.|   |||       ||| || |||..|||.|||...|.
BL03441___yve    747 AGGCGTTTCTTCG---CTC-------GTCATG-TTTGCCGGTTTTCAAAA    785

BSNT_05190___    789 CGACATACATAAGCTGATTCAGCTTGCGGATGTATCTGTCGCATCCAGCA    838
                     ..||||.||..|...||||||||||||.||.||.||||||||.||.||||
BL03441___yve    786 AAACATCCACGAATGGATTCAGCTTGCAGACGTGTCTGTCGCCTCAAGCA    835

BSNT_05190___    839 TTAGAGAGGGCCTCGGCATGAATGTGCTTGAGGGAATGGCGGCAGAAAAA    888
                     |.||.||.||.|||||||||||..|.|||||.|||||||||.|||.|||.
BL03441___yve    836 TCAGGGAAGGGCTCGGCATGAACCTCCTTGAAGGAATGGCGTCAGGAAAG    885

BSNT_05190___    889 CCGGCGATCGCCACAGATAATCGCGGGCATCGGGAAATCATTCGCGACGG    938
                     ||.||..|.||..|.||.||.|||||.||.||||||.||||||..||.||
BL03441___yve    886 CCCGCCGTTGCAGCGGACAACCGCGGACACCGGGAAGTCATTCAAGAGGG    935

BSNT_05190___    939 AGAAAACGGTTTTCTGATCAAAATC-----GGTGACAGTGCTG---CTTT    980
                     .|..|||||.|||.||.|     ||     ||.|||   ||.|   |.||
BL03441___yve    936 CGTGAACGGATTTTTGGT-----TCCGCAGGGAGAC---GCCGGAACGTT    977

BSNT_05190___    981 TGCCCGCCGG--ATTGAACAGCTTTACCATAAGCCGGAGCTCTGCCG---   1025
                     ...|..||||  ||||  |||||.||||.|..|||  ..||.|| ||   
BL03441___yve    978 CAGCGACCGGATATTG--CAGCTGTACCGTCTGCC--TTCTTTG-CGAAA   1022

BSNT_05190___   1026 AAAGCTGGGACAGGAAGGCCGAAAAACAGCCTTG-CGC-TTCTCGGAGGC   1073
                     ||||.|||||.|.|..||..||..|||||||  | ||| ||.||..||..
BL03441___yve   1023 AAAGATGGGAGACGCGGGGAGACGAACAGCC--GCCGCTTTTTCCCAGCA   1070

BSNT_05190___   1074 GCGAACGGTGGAAGAAATGGCAGATATTTATTCCGCGTACATGGATATGG   1123
                     |||.||.||..||||||||||.|..|||||.||..|.|..|||||||..|
BL03441___yve   1071 GCGCACCGTCAAAGAAATGGCGGGCATTTACTCTTCCTTTATGGATAACG   1120

BSNT_05190___   1124 A-----TATAAAGGA----GAAAAGCGTATGA   1146
                     |     |..||||||    ||||   |.||||
BL03441___yve   1121 AAACAGTTGAAAGGAGGCTGAAA---GGATGA   1149


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