Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05192 and BL03438

See Amino acid alignment / Visit BSNT_05192 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_05192___yveL.1.5803.seq
#    -bsequence dna-align/BL03438___yveL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05192___yveL-BL03438___yveL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05192___yveL-BL03438___yveL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05192___yveL
# 2: BL03438___yveL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity:     431/779 (55.3%)
# Similarity:   431/779 (55.3%)
# Gaps:         181/779 (23.2%)
# Score: 1130.0
# 
#
#=======================================

BSNT_05192___      1 GTGATCTTTGGAAAAAAGAAAGCAAGGCGAGGTTTGGCTCAAATATC---     47
                            ||||..|..|||||..||.||      |..|.||||||||   
BL03438___yve      1 -------TTGGGTATTAGAAAAAAACGC------TCTCGCAAATATCAAT     37

BSNT_05192___     48 -------TGTTTTACACAATAAATCAGTTG----------TTGCGGAACA     80
                            |||    |.||.|..|||||..|          |.|..|||||
BL03438___yve     38 CGGCGCTTGT----CGCATTGCATCAGCCGAACACGCCGATCGTCGAACA     83

BSNT_05192___     81 ATATCGCACCATTCGGACAAACATTGAGTTCTCATCTGTCCAGACCAACT    130
                     .|||||.||.||..||||.|||||||||||.|||||           |.|
BL03438___yve     84 GTATCGGACGATCAGGACGAACATTGAGTTTTCATC-----------ATT    122

BSNT_05192___    131 TGCGA-----------TCTATCCTCGTCACCTCCTCTG----TGCCTGGT    165
                     ||.||           ||..|.|||.|.||.||    |    ||||.||.
BL03438___yve    123 TGAGAAGCCGTTCAAGTCATTGCTCATTACATC----GGGCCTGCCGGGA    168

BSNT_05192___    166 GAAGGTAAATCGTTCAGTGCAGCGAATCTT-GCGGCTGTCTTTGCGCAGC    214
                     |||||.|||||.|||...||..| ||.||| |||...||.|||.|   ||
BL03438___yve    169 GAAGGCAAATCATTCTCGGCTTC-AAACTTGGCGATCGTATTTTC---GC    214

BSNT_05192___    215 AGCAGGAAAAGAAAGTACTGCTGGTGGATGCCGATTTAAGAAAGCCGACC    264
                     |.||||||||.||.||.||..||.|.||.||.|||||||||||||||||.
BL03438___yve    215 AACAGGAAAAAAAGGTCCTTTTGATCGACGCAGATTTAAGAAAGCCGACG    264

BSNT_05192___    265 ATCAATCAGACGTTTCAGGTTGATAATGTAACC-----GGGCTGACAAAT    309
                     |||.||.|.|..|||.||.|.||     |||||     ||..|.||||||
BL03438___yve    265 ATCCATAAAATTTTTGAGCTCGA-----TAACCATTCAGGTGTCACAAAT    309

BSNT_05192___    310 GT------------------GCTG------GTCG----GCAATGCTTCAC    331
                     ||                  ||||      ||||    ||||        
BL03438___yve    310 GTATTAATGAAAAAATCGACGCTGGAAAATGTCGTCCAGCAA--------    351

BSNT_05192___    332 TCAGTGAGACGGTGCAAAAGACGCCGATTGATAACTTATATGTACTGACA    381
                       ||..||.|||    |||..|.||              ||||.||||||
BL03438___yve    352 --AGCCAGGCGG----AAAATCTCC--------------ATGTGCTGACA    381

BSNT_05192___    382 AGCGGGCCGACCCCGCCAAACCCGGCAGAACTGCTGTCTTCAAAAGCAAT    431
                     |||||.||||..||.||.||.|||.|.||.||..||||.||..|.||.||
BL03438___yve    382 AGCGGTCCGATTCCTCCGAATCCGTCCGAGCTTTTGTCGTCGCAGGCGAT    431

BSNT_05192___    432 GGGAGACTTAATATCTGAGATC-TATGAACAATTCAGCCTCGTCATCTTT    480
                     ||..|||.|..|..|.|| |.| ||.||.||||.|....|.||||||.||
BL03438___yve    432 GGAGGACCTGCTTGCGGA-AGCGTACGACCAATACGATTTAGTCATCCTT    480

BSNT_05192___    481 GATTCCCCTCCGCTTTTGGCTGTTGCAGATGCTCAGATTCTAGCAAATCA    530
                     |||||.||.|||||||||.|.||.|||||.||.||.||..|.||.|||||
BL03438___yve    481 GATTCGCCGCCGCTTTTGCCGGTCGCAGACGCGCAAATATTGGCGAATCA    530

BSNT_05192___    531 AACAGACGGCAGCGTGCTCGTCGTTTTAAGCGGAAAAACAAA-------A    573
                     ....||.||.|||.|.||.|||.|..|.||||||||||||||       |
BL03438___yve    531 GGTGGATGGAAGCATTCTTGTCATCCTCAGCGGAAAAACAAAGCTTGATA    580

BSNT_05192___    574 AC-CGATACCGT-TCTGAAAGCAAAAGATGCACTGGAACAAT-----CCA    616
                     || ||||...|| ||.|         ||.||.|||    |||     |.|
BL03438___yve    581 ACGCGATCAAGTCTCGG---------GACGCGCTG----AATTCTTCCAA    617

BSNT_05192___    617 ATGCGAAGCTGTTAGGCGCTCTTTTAAACAAAAAGAAAATGAAAAAATCG    666
                     |.||||| |||.|.|||||..|..|.|||.....||||.||||.|||.||
BL03438___yve    618 AAGCGAA-CTGCTCGGCGCCGTGCTGAACGGGCGGAAAGTGAAGAAAGCG    666

BSNT_05192___    667 GAACACTATTCCTACTAG-----------    684
                     ...||.|||...|||  |           
BL03438___yve    667 CGCCAATATAATTAC--GCAACCATGTAA    693


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.