Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05192 and BL03438
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:19
# Commandline: needle
# -asequence dna-align/BSNT_05192___yveL.1.5803.seq
# -bsequence dna-align/BL03438___yveL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05192___yveL-BL03438___yveL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05192___yveL-BL03438___yveL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05192___yveL
# 2: BL03438___yveL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity: 431/779 (55.3%)
# Similarity: 431/779 (55.3%)
# Gaps: 181/779 (23.2%)
# Score: 1130.0
#
#
#=======================================
BSNT_05192___ 1 GTGATCTTTGGAAAAAAGAAAGCAAGGCGAGGTTTGGCTCAAATATC--- 47
||||..|..|||||..||.|| |..|.||||||||
BL03438___yve 1 -------TTGGGTATTAGAAAAAAACGC------TCTCGCAAATATCAAT 37
BSNT_05192___ 48 -------TGTTTTACACAATAAATCAGTTG----------TTGCGGAACA 80
||| |.||.|..|||||..| |.|..|||||
BL03438___yve 38 CGGCGCTTGT----CGCATTGCATCAGCCGAACACGCCGATCGTCGAACA 83
BSNT_05192___ 81 ATATCGCACCATTCGGACAAACATTGAGTTCTCATCTGTCCAGACCAACT 130
.|||||.||.||..||||.|||||||||||.||||| |.|
BL03438___yve 84 GTATCGGACGATCAGGACGAACATTGAGTTTTCATC-----------ATT 122
BSNT_05192___ 131 TGCGA-----------TCTATCCTCGTCACCTCCTCTG----TGCCTGGT 165
||.|| ||..|.|||.|.||.|| | ||||.||.
BL03438___yve 123 TGAGAAGCCGTTCAAGTCATTGCTCATTACATC----GGGCCTGCCGGGA 168
BSNT_05192___ 166 GAAGGTAAATCGTTCAGTGCAGCGAATCTT-GCGGCTGTCTTTGCGCAGC 214
|||||.|||||.|||...||..| ||.||| |||...||.|||.| ||
BL03438___yve 169 GAAGGCAAATCATTCTCGGCTTC-AAACTTGGCGATCGTATTTTC---GC 214
BSNT_05192___ 215 AGCAGGAAAAGAAAGTACTGCTGGTGGATGCCGATTTAAGAAAGCCGACC 264
|.||||||||.||.||.||..||.|.||.||.|||||||||||||||||.
BL03438___yve 215 AACAGGAAAAAAAGGTCCTTTTGATCGACGCAGATTTAAGAAAGCCGACG 264
BSNT_05192___ 265 ATCAATCAGACGTTTCAGGTTGATAATGTAACC-----GGGCTGACAAAT 309
|||.||.|.|..|||.||.|.|| ||||| ||..|.||||||
BL03438___yve 265 ATCCATAAAATTTTTGAGCTCGA-----TAACCATTCAGGTGTCACAAAT 309
BSNT_05192___ 310 GT------------------GCTG------GTCG----GCAATGCTTCAC 331
|| |||| |||| ||||
BL03438___yve 310 GTATTAATGAAAAAATCGACGCTGGAAAATGTCGTCCAGCAA-------- 351
BSNT_05192___ 332 TCAGTGAGACGGTGCAAAAGACGCCGATTGATAACTTATATGTACTGACA 381
||..||.||| |||..|.|| ||||.||||||
BL03438___yve 352 --AGCCAGGCGG----AAAATCTCC--------------ATGTGCTGACA 381
BSNT_05192___ 382 AGCGGGCCGACCCCGCCAAACCCGGCAGAACTGCTGTCTTCAAAAGCAAT 431
|||||.||||..||.||.||.|||.|.||.||..||||.||..|.||.||
BL03438___yve 382 AGCGGTCCGATTCCTCCGAATCCGTCCGAGCTTTTGTCGTCGCAGGCGAT 431
BSNT_05192___ 432 GGGAGACTTAATATCTGAGATC-TATGAACAATTCAGCCTCGTCATCTTT 480
||..|||.|..|..|.|| |.| ||.||.||||.|....|.||||||.||
BL03438___yve 432 GGAGGACCTGCTTGCGGA-AGCGTACGACCAATACGATTTAGTCATCCTT 480
BSNT_05192___ 481 GATTCCCCTCCGCTTTTGGCTGTTGCAGATGCTCAGATTCTAGCAAATCA 530
|||||.||.|||||||||.|.||.|||||.||.||.||..|.||.|||||
BL03438___yve 481 GATTCGCCGCCGCTTTTGCCGGTCGCAGACGCGCAAATATTGGCGAATCA 530
BSNT_05192___ 531 AACAGACGGCAGCGTGCTCGTCGTTTTAAGCGGAAAAACAAA-------A 573
....||.||.|||.|.||.|||.|..|.|||||||||||||| |
BL03438___yve 531 GGTGGATGGAAGCATTCTTGTCATCCTCAGCGGAAAAACAAAGCTTGATA 580
BSNT_05192___ 574 AC-CGATACCGT-TCTGAAAGCAAAAGATGCACTGGAACAAT-----CCA 616
|| ||||...|| ||.| ||.||.||| ||| |.|
BL03438___yve 581 ACGCGATCAAGTCTCGG---------GACGCGCTG----AATTCTTCCAA 617
BSNT_05192___ 617 ATGCGAAGCTGTTAGGCGCTCTTTTAAACAAAAAGAAAATGAAAAAATCG 666
|.||||| |||.|.|||||..|..|.|||.....||||.||||.|||.||
BL03438___yve 618 AAGCGAA-CTGCTCGGCGCCGTGCTGAACGGGCGGAAAGTGAAGAAAGCG 666
BSNT_05192___ 667 GAACACTATTCCTACTAG----------- 684
...||.|||...||| |
BL03438___yve 667 CGCCAATATAATTAC--GCAACCATGTAA 693
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