Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05276 and BL03426

See Amino acid alignment / Visit BSNT_05276 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:22
# Commandline: needle
#    -asequence dna-align/BSNT_05276___yvdD.1.5803.seq
#    -bsequence dna-align/BL03426___yvdD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05276___yvdD-BL03426___yvdD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05276___yvdD-BL03426___yvdD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05276___yvdD
# 2: BL03426___yvdD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity:     434/592 (73.3%)
# Similarity:   434/592 (73.3%)
# Gaps:          32/592 ( 5.4%)
# Score: 1518.0
# 
#
#=======================================

BSNT_05276___      1 TTGAAAACCATTTGTGTATTTGCGGGATCAAACCCTGGGGGAAATGAAGC     50
                     .|||||||..|.||.||||.|.|.|||||||| ..||||||  ..||..|
BL03426___yvd      1 GTGAAAACGGTATGCGTATATTCAGGATCAAA-TATGGGGG--CGGACCC     47

BSNT_05276___     51 GTA-TAAAAGA--AAAGCGGCAGAGCTTGGCGTGTATATGGCTGAGCAGG     97
                     |.| ||.||||  |||||.||||||||||||||.|||||.||.|||.|||
BL03426___yvd     48 GGAGTACAAGAAGAAAGCTGCAGAGCTTGGCGTTTATATTGCCGAGAAGG     97

BSNT_05276___     98 GAATCGGCCTTGTCTATGGGGGCTCCCGCGTCGGCTTGATGGGCACGATT    147
                     |..|..|||||||.||.||.||.||..|..|.||.|||||||||..||||
BL03426___yvd     98 GGCTTCGCCTTGTTTACGGAGGATCGAGAATGGGATTGATGGGCGTGATT    147

BSNT_05276___    148 GCCGA---CGCGATTA-TGGAAAACGGCGGAACTGCAA----TCGGGGTC    189
                     ||.||   ||    || |||||||||||||    |.||    ||||.||.
BL03426___yvd    148 GCGGATACCG----TATTGGAAAACGGCGG----GGAAGTCGTCGGCGTT    189

BSNT_05276___    190 ATGCCGAGCGG--TTTGTTCAGCGGGGAGGTTGTCCATCAAAACCTGACT    237
                     |||||||..||  |||.|.||  |||||..|.||.|||||..|..||||.
BL03426___yvd    190 ATGCCGAAAGGCCTTTTTACA--GGGGAAATCGTTCATCAGCAGTTGACG    237

BSNT_05276___    238 GAGCTGATTGAAGTAAACGGGATGCATGAACGAAAGGCTAAAATGAGCGA    287
                     ||||||||.|||||.|.|||.||||||||.||.||.||.||||||||.||
BL03426___yvd    238 GAGCTGATCGAAGTGAGCGGCATGCATGAGCGCAAAGCGAAAATGAGTGA    287

BSNT_05276___    288 GCTGGCGGACGGCTTTATCTCGATGCCGGGCGGCTTCGGTACATATGAAG    337
                     ..|.||.||||||||||||.|||||||.||.||||||||.||.|.|||||
BL03426___yvd    288 ATTAGCTGACGGCTTTATCGCGATGCCCGGAGGCTTCGGCACGTTTGAAG    337

BSNT_05276___    338 AATTATTTGAAGTGCTGTGCTGGGCACAGATCGGCATCCACCAAAAGCCA    387
                     |..|.|||||||||||.||||||||.||||||||||||||.||||||||.
BL03426___yvd    338 AGCTGTTTGAAGTGCTCTGCTGGGCGCAGATCGGCATCCATCAAAAGCCG    387

BSNT_05276___    388 ATCGGACTGTACAATGTAAACGGATATTTTGAACCAATGATGAAAATGGT    437
                     ||||||||.||||||||.|||||.|||||||||||..|..|.||||||.|
BL03426___yvd    388 ATCGGACTTTACAATGTGAACGGCTATTTTGAACCCCTTCTTAAAATGCT    437

BSNT_05276___    438 GAAATACAGCATTCAAGAAGGGTTTTCTAACGAATCGCACCTAAAACTGA    487
                     ..||||||||.||||||||||.|||||.|||.||||||||||..|.||||
BL03426___yvd    438 CGAATACAGCGTTCAAGAAGGCTTTTCGAACAAATCGCACCTTGAGCTGA    487

BSNT_05276___    488 TTCACAGC-TCGTCACGGCCGGATGAGTTAATTGAGCAAATGCAAAATTA    536
                     |||| .|| |||.||.|.||.|..|||||.||.|.|.|.|||.|..||||
BL03426___yvd    488 TTCA-TGCTTCGGCAAGCCCTGCGGAGTTGATCGGGAACATGAATGATTA    536

BSNT_05276___    537 TTCTTATCCGATTTTAGAAAAAAAGTGGACAGAAATTTAA--    576
                     |...||.||..|..|.||.||||||||||..|  |||||.  
BL03426___yvd    537 TCGCTACCCTGTCCTCGAGAAAAAGTGGAAGG--ATTTATAG    576


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