Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05281 and BL03424
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:23
# Commandline: needle
# -asequence dna-align/BSNT_05281___yvdA.1.5803.seq
# -bsequence dna-align/BL03424___yvdA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05281___yvdA-BL03424___yvdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05281___yvdA-BL03424___yvdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05281___yvdA
# 2: BL03424___yvdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity: 419/631 (66.4%)
# Similarity: 419/631 (66.4%)
# Gaps: 86/631 (13.6%)
# Score: 1353.0
#
#
#=======================================
BSNT_05281___ 1 ATGGTTTCTTTAACATCAATTTTGGAACACAATCAGCGGTTTGTCAGTGA 50
||||....||||||.||.||||||.|.|||||||||...||||| |
BL03424___yvd 1 ATGGCGATTTTAACTTCCATTTTGAAGCACAATCAGTCTTTTGT-----A 45
BSNT_05281___ 51 GAAGAA-----GTATGAACCGTACAAAACGACAAAGTTTCCTTCGAAAAA 95
||.||| |||.||....|||.|||||||.||.||||||..||||||
BL03424___yvd 46 GAGGAAAAGGGGTACGAGTTTTACGAAACGACGAAATTTCCTGAGAAAAA 95
BSNT_05281___ 96 GCTCGTCATTGTCACCTGTATGGATACAAGGC--TTA-CAGAACTTCTTC 142
.||.||.|||.|.||.||.|||||.|| || ||| .||||||.||.|
BL03424___yvd 96 ACTTGTGATTTTGACATGCATGGACAC---GCGTTTATTAGAACTGCTCC 142
BSNT_05281___ 143 CGCAAGCAATGGGGCTTAAAAACGGTGATGCTAAAATTGTAAAAAACGCG 192
..||.||||||||..|.|||||.||.||.||.|||||..|.||.||.|||
BL03424___yvd 143 ATCATGCAATGGGTTTAAAAAATGGAGACGCAAAAATCATTAAGAATGCG 192
BSNT_05281___ 193 GGAGCCATCGTTTCTCACCCATTTGGAAGCGTGATGCGAAGCATACTGGT 242
||||||.|.|||||||||||.|||||||||||.|||||.|||||.||.||
BL03424___yvd 193 GGAGCCGTTGTTTCTCACCCTTTTGGAAGCGTCATGCGCAGCATTCTTGT 242
BSNT_05281___ 243 CGCGATTTATGAATTGCAGGCTGAAGCGGTATGCATTGTCGGCCATCATG 292
.||..|.|||||..||||||||||||..||.|||.|..|||||||.||||
BL03424___yvd 243 GGCTGTCTATGAGCTGCAGGCTGAAGAAGTCTGCGTGATCGGCCACCATG 292
BSNT_05281___ 293 AATGCGGAATGTCTGGGCTGAATGCGTCCTCGATTCTTGAGAAAGCAAAG 342
|.|||||||||.|..|.|||||.||.||.||.||.|||.|.||.||.|
BL03424___yvd 293 AGTGCGGAATGGCAAGCCTGAACGCTTCATCTATCCTTCAAAAGGCCA-- 340
BSNT_05281___ 343 GAAC-GCGGGGTG--GAGGATAGCTGCCT-GAATT--TGCTGACGAGC-- 384
||| |||||||| ||.|||.||||.|| |||.| ||| |||
BL03424___yvd 341 -AACAGCGGGGTGTCGATGATGGCTGTCTCGAACTCCTGC-----AGCAT 384
BSNT_05281___ 385 GCCGGACTCGATTTGAAAACGTGGCTGACTGGTTTTCACAGCGTAGAAGA 434
.|.||..||||||||.|.||.|||.||||.||.|||.|||||||.|||||
BL03424___yvd 385 TCGGGCATCGATTTGGACACATGGATGACGGGCTTTGACAGCGTTGAAGA 434
BSNT_05281___ 435 AAGCGTTTCCCACAGTGTGAACATGATTAAGAATCATCCGCT----GCTT 480
.|||||...||||||||||||||||||...|||.|||||||| .|||
BL03424___yvd 435 CAGCGTCAGCCACAGTGTGAACATGATCCGGAAACATCCGCTCTTGTCTT 484
BSNT_05281___ 481 CCGAAAAAAGTGCCGGTTCACGGACTTGTCATTCATCCTGAAACAGGAAA 530
| |.|.||.|||||.||||||.|.||.|||.||||..|.||.||
BL03424___yvd 485 C----AGACGTTCCGGTGCACGGATTGGTGATTGATCCAAAGACCGG--- 527
BSNT_05281___ 531 AC-------------TTGATG-TGGTCATTAACGGTTATGAA-AC--TGA 563
| ||||.| ||||.|||.||| |||| || |..
BL03424___yvd 528 -CCGTTTGGATGTTGTTGAAGATGGTTATTCACG----TGAAGACGTTTC 572
BSNT_05281___ 564 GCTTATAAACAATCACTCATAA--------- 585
|||| ||..||
BL03424___yvd 573 GCTT------------TCGGAAGTGCGATGA 591
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