Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00925 and BL03423
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00925___ydfE.1.5803.seq
# -bsequence dna-align/BL03423___ydfE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00925___ydfE-BL03423___ydfE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00925___ydfE-BL03423___ydfE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00925___ydfE
# 2: BL03423___ydfE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 678
# Identity: 386/678 (56.9%)
# Similarity: 386/678 (56.9%)
# Gaps: 132/678 (19.5%)
# Score: 977.5
#
#
#=======================================
BSNT_00925___ 1 -TTGGACATCAAAAAACAAGACACTCGTCAATTTAAGGAAATCAAACCCA 49
|.|.||| |||.|.||| |||| |.|| |.|||
BL03423___ydf 1 ATGGAACA--AAACAGCAA----------AATT------ATTC--AGCCA 30
BSNT_00925___ 50 AG-ATCATGTATTATGGTAC-CTCGACATTTCTTCTAACCACATTGAATG 97
|| ||..|.|||||.||.|| |..|.||||| |.||.|.||||.||||.|
BL03423___ydf 31 AGCATTTTATATTACGGAACACCAGTCATTT-TACTCAGCACAATGAACG 79
BSNT_00925___ 98 AGGATGGAACCACTAATATTAGTCCTATGTCTTCTTCTTGGGCTCTTGGA 147
|.||.||..||||.|||.|.||.||..||||.|||||||||||.||.||.
BL03423___ydf 80 AAGACGGTTCCACGAATCTCAGCCCGCTGTCATCTTCTTGGGCGCTCGGG 129
BSNT_00925___ 148 CATTATATAATCCTTGGAGTAGGACTGGGAGGAAAAGCCATCGACAATTT 197
.|||..||..|.||.||..|.|||...|.|||.|||||..|.||.|||||
BL03423___ydf 130 GATTCGATCGTACTCGGTATTGGAACCGAAGGTAAAGCATTGGAAAATTT 179
BSNT_00925___ 198 GGAAAGACACAAAGAGTGTGTCATAAACTTGCCTGGCCCGGA------AT 241
.||.||.||....|..||.||.||.|| ||..||||| .|
BL03423___ydf 180 AGAGAGGCATGCTGGATGCGTTATCAA------TGTGCCGGATTCATCTT 223
BSNT_00925___ 242 TATGGGAAAACATTGAAAGAATTTCATCTTATAGCGGAAAA--------- 282
|||||..|||..|.|||.|..|..|.||.||||.|||.|||
BL03423___ydf 224 TATGGAGAAATGTAGAACGGCTGGCTTCCTATACCGGCAAACGATTCGTT 273
BSNT_00925___ 283 ----AAGAGTATACCGCCTTTAAAGAAGCAGCTCGGATTTACATATAAAA 328
|||| |||.||||.||||||.|||||.||....|
BL03423___ydf 274 CCGGAAGA-------------AAAAAAGCGGCTCGGCTTTACTTACCTTA 310
BSNT_00925___ 329 AAGAAAAATACGAGGCAGCAGGGTTAACG----------CCTTTACAATC 368
|.||.||||..||.||.|..||.||.||| ||||..||.|.
BL03423___ydf 311 AGGAGAAATTTGAAGCCGGCGGATTTACGGCCGCGGATTCCTTGGCAGTG 360
BSNT_00925___ 369 AA-----AAACAGTATCACCAACACGAATTAAAGAATGCCCTATCCAAAT 413
|| |||.|| ||.|| ||.|||||..|.|||||
BL03423___ydf 361 AAACCTGAAAGAG--TCGCC-------------GATTGCCCGCTTCAAAT 395
BSNT_00925___ 414 CGAAGCCGAAG-TGAAACACATTCGGCTTCCAGAATAT-----GAAT--- 454
.|||||.|||| ||..| |||||||..||||.|||.|| |.||
BL03423___ydf 396 TGAAGCGGAAGCTGTCA-ACATTCGCATTCCGGAACATTCCCCGTATTTT 444
BSNT_00925___ 455 --CGTCATTCGCAATTGTAGAGACGCAGGCACTGCATTTTCATGCCGAGG 502
||||||| ||.||..|.|..||.|||.|.||.||..|.|
BL03423___ydf 445 GCCGTCATT----------GAAACAAAAGTGCTTCATGTGCACGCACATG 484
BSNT_00925___ 503 AAAGTATC-ATTCT-----GGACGAAAACCATATCAACCCTTCCAAATGG 546
| |.| |||.| || |||.||||.|||.|.|||...||||||
BL03423___ydf 485 A----AGCGATTTTAAAAGGG--GAACACCACATCGATCCTCAAAAATGG 528
BSNT_00925___ 547 AGCCCGCTTATCTATAATTTCAGACATTATTTTGGTTTAGGAAGAGAAGT 596
...||..|.||.|||..|||||||||.||||||||.||||||.||||..|
BL03423___ydf 529 GAACCTTTGATTTATCTTTTCAGACACTATTTTGGCTTAGGAGGAGAGCT 578
BSNT_00925___ 597 CGGAAAGACTTTTCGTTCAGAGACATGA 624
.||.||.| |||||.|.| |.|||
BL03423___ydf 579 TGGCAAAA-----CGTTCCGCG-CCTGA 600
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