Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05305 and BL03413
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:24
# Commandline: needle
# -asequence dna-align/BSNT_05305___hisI.1.5803.seq
# -bsequence dna-align/BL03413___hisI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05305___hisI-BL03413___hisI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05305___hisI-BL03413___hisI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05305___hisI
# 2: BL03413___hisI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity: 475/642 (74.0%)
# Similarity: 475/642 (74.0%)
# Gaps: 21/642 ( 3.3%)
# Score: 1707.5
#
#
#=======================================
BSNT_05305___ 1 ATGAAACAGGCAGATGAACTGCGTTTTAACGAGGACGGATTAATTCCTGC 50
||||...|||||||.||..||...|||||.||.|.|||.||.||.||.||
BL03413___his 1 ATGATCAAGGCAGACGAGTTGACATTTAATGAAGCCGGCTTGATCCCGGC 50
BSNT_05305___ 51 CATCGTGCAGGATGCGGCAAGCAAAGAAGTGCTGACACTTGCCTATATGA 100
.||.||.||||||||.||.|||||||||||||||||||||||.|||||||
BL03413___his 51 GATTGTCCAGGATGCAGCGAGCAAAGAAGTGCTGACACTTGCTTATATGA 100
BSNT_05305___ 101 ACAAGGAATCATACGAAAAAACGCTGGAAACGAAGGAAACATGGTTTTAC 150
|.||.|||||.|..|||||||||||||||||||||||.||||||||||.|
BL03413___his 101 ATAAAGAATCGTTTGAAAAAACGCTGGAAACGAAGGAGACATGGTTTTTC 150
BSNT_05305___ 151 AGCCGCTCACGCCAAGCGTTATGGCATAAAGGAGAAACCTCAGGGAACAC 200
|||.|.||.|||..||.|.|.||||||||.||||..||.||.||.||||.
BL03413___his 151 AGCAGATCGCGCGGAGAGCTCTGGCATAAGGGAGCGACGTCGGGTAACAT 200
BSNT_05305___ 201 GCAAGCG-GTCAAAGGTATCCGGTATGACTGCGACGAGGACGCGTTGCTC 249
.| |||| ||.||||..|||.||..||||||.||..|.||.|||.|..||
BL03413___his 201 TC-AGCGTGTGAAAGACATCAGGCTTGACTGTGATCAAGATGCGCTCATC 249
BSNT_05305___ 250 GTACTCGTAGAACCGTCAGGCCCGGCATGCCACACTGGCAGCTACAGCTG 299
||.||.||.||||||.|.||.|||||.||.||.|..||.|||||||||||
BL03413___his 250 GTGCTTGTTGAACCGGCGGGGCCGGCCTGTCATAAAGGAAGCTACAGCTG 299
BSNT_05305___ 300 TTTTACG---AAGGAACA-AACAGA-AGAACAGGCCGCGGGCCGATTCGG 344
|||..|| ...||||| |.|||| || ||.|...|| |||||.||.|.
BL03413___his 300 TTTCTCGCCCGGCGAACATATCAGACAG-ACTGATGGC-GGCCGCTTTGA 347
BSNT_05305___ 345 CATCATGAACGAACTGGAGCGCGTAATCGCGGAACGCCAAGCGGAGATGC 394
||||||.||.|||||.||...|||.||.||..||||.||.||.||.||||
BL03413___his 348 CATCATCAATGAACTTGAAACCGTCATTGCCAAACGGCAGGCTGAAATGC 397
BSNT_05305___ 395 CTGAAGGAGCTTACACCACTTACCTTTTCCGTGAAGGCGTCGATAAGATT 444
|||||||.||.||.||.||.||..|.||||||||||||||.|||||||||
BL03413___his 398 CTGAAGGCGCATATACAACATATTTGTTCCGTGAAGGCGTTGATAAGATT 447
BSNT_05305___ 445 TTGAAAAAAGTCGGTGAAGAAGCATCCGAAGTCATCATCGCCGCGAAAAA 494
|||||.|||||.||.||||||||..|.||||||||||||||.||.|||||
BL03413___his 448 TTGAAGAAAGTTGGCGAAGAAGCGGCGGAAGTCATCATCGCTGCAAAAAA 497
BSNT_05305___ 495 CCGGGACCACGAGGAACTCAAATGGGAAGCGGCAGACCTGCTGTATCACC 544
|||.||.|..||.|||||.||||||||.|||||.|||||.||.||.||.|
BL03413___his 498 CCGTGATCCTGAAGAACTGAAATGGGAGGCGGCTGACCTTCTTTACCATC 547
BSNT_05305___ 545 TGCTTGTCCTGCTCAGAGAACAAGCCTTGCCGCTGGATGATGTGCTTGAC 594
||||.||..||||.||.||.||..||.|.|||||.|||||||||||||.|
BL03413___his 548 TGCTCGTTTTGCTGAGGGAGCAGTCCCTTCCGCTTGATGATGTGCTTGGC 597
BSNT_05305___ 595 GTATTGAAAAAACGCCAT------TCTGAGAAAGAAGAGTAA 630
||.||||||.|.|||||| |||||...|.||
BL03413___his 598 GTCTTGAAAGAGCGCCATGAAGGATCTGAATCATAA------ 633
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