Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05305 and BL03413

See Amino acid alignment / Visit BSNT_05305 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:24
# Commandline: needle
#    -asequence dna-align/BSNT_05305___hisI.1.5803.seq
#    -bsequence dna-align/BL03413___hisI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05305___hisI-BL03413___hisI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05305___hisI-BL03413___hisI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05305___hisI
# 2: BL03413___hisI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity:     475/642 (74.0%)
# Similarity:   475/642 (74.0%)
# Gaps:          21/642 ( 3.3%)
# Score: 1707.5
# 
#
#=======================================

BSNT_05305___      1 ATGAAACAGGCAGATGAACTGCGTTTTAACGAGGACGGATTAATTCCTGC     50
                     ||||...|||||||.||..||...|||||.||.|.|||.||.||.||.||
BL03413___his      1 ATGATCAAGGCAGACGAGTTGACATTTAATGAAGCCGGCTTGATCCCGGC     50

BSNT_05305___     51 CATCGTGCAGGATGCGGCAAGCAAAGAAGTGCTGACACTTGCCTATATGA    100
                     .||.||.||||||||.||.|||||||||||||||||||||||.|||||||
BL03413___his     51 GATTGTCCAGGATGCAGCGAGCAAAGAAGTGCTGACACTTGCTTATATGA    100

BSNT_05305___    101 ACAAGGAATCATACGAAAAAACGCTGGAAACGAAGGAAACATGGTTTTAC    150
                     |.||.|||||.|..|||||||||||||||||||||||.||||||||||.|
BL03413___his    101 ATAAAGAATCGTTTGAAAAAACGCTGGAAACGAAGGAGACATGGTTTTTC    150

BSNT_05305___    151 AGCCGCTCACGCCAAGCGTTATGGCATAAAGGAGAAACCTCAGGGAACAC    200
                     |||.|.||.|||..||.|.|.||||||||.||||..||.||.||.||||.
BL03413___his    151 AGCAGATCGCGCGGAGAGCTCTGGCATAAGGGAGCGACGTCGGGTAACAT    200

BSNT_05305___    201 GCAAGCG-GTCAAAGGTATCCGGTATGACTGCGACGAGGACGCGTTGCTC    249
                     .| |||| ||.||||..|||.||..||||||.||..|.||.|||.|..||
BL03413___his    201 TC-AGCGTGTGAAAGACATCAGGCTTGACTGTGATCAAGATGCGCTCATC    249

BSNT_05305___    250 GTACTCGTAGAACCGTCAGGCCCGGCATGCCACACTGGCAGCTACAGCTG    299
                     ||.||.||.||||||.|.||.|||||.||.||.|..||.|||||||||||
BL03413___his    250 GTGCTTGTTGAACCGGCGGGGCCGGCCTGTCATAAAGGAAGCTACAGCTG    299

BSNT_05305___    300 TTTTACG---AAGGAACA-AACAGA-AGAACAGGCCGCGGGCCGATTCGG    344
                     |||..||   ...||||| |.|||| || ||.|...|| |||||.||.|.
BL03413___his    300 TTTCTCGCCCGGCGAACATATCAGACAG-ACTGATGGC-GGCCGCTTTGA    347

BSNT_05305___    345 CATCATGAACGAACTGGAGCGCGTAATCGCGGAACGCCAAGCGGAGATGC    394
                     ||||||.||.|||||.||...|||.||.||..||||.||.||.||.||||
BL03413___his    348 CATCATCAATGAACTTGAAACCGTCATTGCCAAACGGCAGGCTGAAATGC    397

BSNT_05305___    395 CTGAAGGAGCTTACACCACTTACCTTTTCCGTGAAGGCGTCGATAAGATT    444
                     |||||||.||.||.||.||.||..|.||||||||||||||.|||||||||
BL03413___his    398 CTGAAGGCGCATATACAACATATTTGTTCCGTGAAGGCGTTGATAAGATT    447

BSNT_05305___    445 TTGAAAAAAGTCGGTGAAGAAGCATCCGAAGTCATCATCGCCGCGAAAAA    494
                     |||||.|||||.||.||||||||..|.||||||||||||||.||.|||||
BL03413___his    448 TTGAAGAAAGTTGGCGAAGAAGCGGCGGAAGTCATCATCGCTGCAAAAAA    497

BSNT_05305___    495 CCGGGACCACGAGGAACTCAAATGGGAAGCGGCAGACCTGCTGTATCACC    544
                     |||.||.|..||.|||||.||||||||.|||||.|||||.||.||.||.|
BL03413___his    498 CCGTGATCCTGAAGAACTGAAATGGGAGGCGGCTGACCTTCTTTACCATC    547

BSNT_05305___    545 TGCTTGTCCTGCTCAGAGAACAAGCCTTGCCGCTGGATGATGTGCTTGAC    594
                     ||||.||..||||.||.||.||..||.|.|||||.|||||||||||||.|
BL03413___his    548 TGCTCGTTTTGCTGAGGGAGCAGTCCCTTCCGCTTGATGATGTGCTTGGC    597

BSNT_05305___    595 GTATTGAAAAAACGCCAT------TCTGAGAAAGAAGAGTAA    630
                     ||.||||||.|.||||||      |||||...|.||      
BL03413___his    598 GTCTTGAAAGAGCGCCATGAAGGATCTGAATCATAA------    633


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