Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05306 and BL03412

See Amino acid alignment / Visit BSNT_05306 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:24
# Commandline: needle
#    -asequence dna-align/BSNT_05306___hisF.1.5803.seq
#    -bsequence dna-align/BL03412___hisF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05306___hisF-BL03412___hisF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05306___hisF-BL03412___hisF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05306___hisF
# 2: BL03412___hisF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 772
# Identity:     585/772 (75.8%)
# Similarity:   585/772 (75.8%)
# Gaps:          26/772 ( 3.4%)
# Score: 2135.0
# 
#
#=======================================

BSNT_05306___      1 ATGATCACAAAACGGATTATTCCATGCCTTGATGTCAAAGAAGGACGCGT     50
                     .|||||||||||||.||.||.||.||..|.||.||.|||||.||||||||
BL03412___his      1 GTGATCACAAAACGAATCATCCCGTGTTTGGACGTAAAAGATGGACGCGT     50

BSNT_05306___     51 TGTCAAAGGAATTCAATTTCTCGAATTGAAGGATGCAGGTGACCCAGTTG    100
                     |||||||||..|.||||||.|.||||||||.|||||.||.|||||.||||
BL03412___his     51 TGTCAAAGGTGTACAATTTGTTGAATTGAAAGATGCCGGCGACCCGGTTG    100

BSNT_05306___    101 AACTCGCTGAAGTGTACGACCGGGAAGGTGCGGATGAACTTGTTTTTCTT    150
                     ||||.||||||||.||.||.|..|||||.||.|||||.|||||||||||.
BL03412___his    101 AACTGGCTGAAGTATATGATCATGAAGGCGCAGATGAGCTTGTTTTTCTC    150

BSNT_05306___    151 GATATCTCCGCCTCACATGAAGGACGAAAGACGATGATTGACGTTGTGGA    200
                     ||||||||.||.||.||.||.||..||||.||||||.||||.||.||.||
BL03412___his    151 GATATCTCGGCTTCCCACGAGGGGAGAAAAACGATGGTTGATGTCGTTGA    200

BSNT_05306___    201 GCAG-GTTGCCGCGAAGCTTGCGATTCCGTTTACAGTCGGCGGCGGCATC    249
                      .|| ||.||.||.|||||.|||||.||||||||.|||||||||||||||
BL03412___his    201 -AAGAGTGGCGGCCAAGCTGGCGATCCCGTTTACCGTCGGCGGCGGCATC    249

BSNT_05306___    250 AATCAGCTCAG-CGATATGAAAACGATACTGCGTGCCGGAGCGGACAAAG    298
                     |||| |.|..| .||||||||||||||||||||.||||||||.|||||||
BL03412___his    250 AATC-GTTTGGATGATATGAAAACGATACTGCGGGCCGGAGCCGACAAAG    298

BSNT_05306___    299 TGTCGGTGAACACGGCAGCTGTTCTTCGCCCCGAGCTGATTACAGAAGGA    348
                     |.||.||.||.|||||.||.|||||.||.||.||.|||||.||.|||||.
BL03412___his    299 TTTCCGTCAATACGGCTGCCGTTCTCCGGCCGGAACTGATAACGGAAGGC    348

BSNT_05306___    349 GCCGAGTTTTTCGGTTCGCAATGCATCGTTCTTGCCATTGATGCCAAGTA    398
                     |||||.||||||||.||.||||||||.||..|.||.||||||||.||.||
BL03412___his    349 GCCGACTTTTTCGGCTCTCAATGCATTGTCGTCGCGATTGATGCAAAATA    398

BSNT_05306___    399 TGACAAAGAATCTGA----CACATATAAGGTCTATACGCACGGCGG-CAG    443
                     .||...||||.||||    .|| |||   ||.|||||.|||||||| |.|
BL03412___his    399 CGATCCAGAAGCTGATCTGTAC-TAT---GTTTATACACACGGCGGTCGG    444

BSNT_05306___    444 AAAGAAAACAGA---TTGGGAGGTCACCG---CGTGGGCAAAAGAAGGCG    487
                     ||| ||||| ||   ||  ||||   |||   |.|||||.||.||||.||
BL03412___his    445 AAA-AAAAC-GAACCTT--GAGG---CCGTTTCCTGGGCGAAGGAAGCCG    487

BSNT_05306___    488 TCAAACGCGGGGCGGGAGAAATATTGCTGACAAGCATGGACTCTGACGGT    537
                     |....||.||.||.||.|||||..||||||||||||||||.||.|||||.
BL03412___his    488 TTCGGCGGGGAGCAGGTGAAATCCTGCTGACAAGCATGGATTCAGACGGA    537

BSNT_05306___    538 GAGAAAAAAGGCTTCGACCACACGCTGACAAAGCTTGTTTCCGAAACTGT    587
                     ||.||.||.||.||.|||..||.|||||||||||||||.||.|||.|.||
BL03412___his    538 GAAAAGAACGGATTTGACTGCAGGCTGACAAAGCTTGTGTCAGAAGCCGT    587

BSNT_05306___    588 CCCCGTCCCTGTTATCGCTTCGGGAGGCGCGGGAAACGCGCAGCATATGC    637
                     ..|.|||||.||.||.||.||.||||||||.||....|||.|.||.|||.
BL03412___his    588 TTCAGTCCCGGTCATTGCATCCGGAGGCGCAGGGCGTGCGGACCACATGT    637

BSNT_05306___    638 TTGAGGCTTTTACAAAAGGAGAAGCCGACGCTGCGCTGGCCGCCTCAATT    687
                     .|||.||.|||.||.||||....||.|||||.||.||.|||||.||.||.
BL03412___his    638 ATGATGCGTTTGCAGAAGGCCGGGCGGACGCGGCTCTTGCCGCATCTATC    687

BSNT_05306___    688 TTTCATTATAAAGAAACATCGATTAAAGAAGTGAAATCATACTTGAAAGA    737
                     ||||||||.|||||||||||..|.||||||||.|||.|.||.||.|||||
BL03412___his    688 TTTCATTACAAAGAAACATCTGTAAAAGAAGTAAAAGCTTATTTAAAAGA    737

BSNT_05306___    738 GTACGGGGTGAATGTGAGATGA    759
                     |..||||||||||||.||||||
BL03412___his    738 GCGCGGGGTGAATGTAAGATGA    759


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05306 and BL03412

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
