Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05307 and BL03411
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:24
# Commandline: needle
# -asequence dna-align/BSNT_05307___hisA.1.5803.seq
# -bsequence dna-align/BL03411___hisA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05307___hisA-BL03411___hisA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05307___hisA-BL03411___hisA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05307___hisA
# 2: BL03411___hisA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity: 548/754 (72.7%)
# Similarity: 548/754 (72.7%)
# Gaps: 32/754 ( 4.2%)
# Score: 1885.5
#
#
#=======================================
BSNT_05307___ 1 ATGAGTGCTTTTACATTATATCCGGCAATTGATATGAGAAACGGCAAATG 50
|||||.|..|||||..|||||||.||.|||||.||.|||||||||||.||
BL03411___his 1 ATGAGCGAGTTTACTGTATATCCTGCCATTGACATAAGAAACGGCAAGTG 50
BSNT_05307___ 51 TGTCCGCCTTGTTCAAGGGGATTATAATAAGGAAACGATATATGGCGATT 100
.|||.|.||..|.||.||.|||||..|.||.||||||||.||.||..|||
BL03411___his 51 CGTCAGGCTCATCCAGGGAGATTACGAAAAAGAAACGATTTACGGTCATT 100
BSNT_05307___ 101 CACCGTACGACATGGCTGAGTTA---TTTGCGAAAGAGGGTGCCGAA--T 145
|.||....||.||||| .|.| |||||..|||||||.|| || |
BL03411___his 101 CCCCTCTGGAGATGGC---CTCACGGTTTGCTGAAGAGGGGGC--AAGCT 145
BSNT_05307___ 146 GGATCCATCTCGTTGATCTCGACGGGGCCAAAGAAGGGAAAAGGGTAAAT 195
||||.|||||.||.|||.|.|||||.||.|.||||||.||||..||.||.
BL03411___his 146 GGATTCATCTTGTCGATTTGGACGGCGCAAGAGAAGGCAAAAAAGTGAAC 195
BSNT_05307___ 196 GACCGCCATGTGATTGAG-ATTGCGCAAAAGCTGAACCTGAAAGTCGAAA 244
|.|.||||.||.| |.|| |||||..|.|||||..||.|.|||||..||.
BL03411___his 196 GGCGGCCACGTCA-TAAGCATTGCTGATAAGCTTGACGTTAAAGTGCAAG 244
BSNT_05307___ 245 TCGGCGGCGGAATCCGTTCCGAAAAAGACGTCTATGAATATTTATCAGC- 293
||||||||||.|||.|..|||||||||||||.|||||.||.||.|| ||
BL03411___his 245 TCGGCGGCGGCATCAGGACCGAAAAAGACGTGTATGACTACTTGTC-GCA 293
BSNT_05307___ 294 AGGAGTCGATCGGGTGATCCTGGGAAGCTCAGCAGTTTCTAACCCTCCGT 343
|||.||.||..||||||||||.||.|||||.||.||.||.||..|...||
BL03411___his 294 AGGCGTTGAGAGGGTGATCCTAGGCAGCTCTGCCGTATCAAATACCGAGT 343
BSNT_05307___ 344 TTGTCAAAAAAATGCTGAAACAATATGGCGAGAAAATTGCAATCGGACTG 393
|||||||||||||||||||....||.||.|.|.|.||.||||||||.||.
BL03411___his 344 TTGTCAAAAAAATGCTGAAGGCCTACGGAGGGCACATCGCAATCGGTCTT 393
BSNT_05307___ 394 GATGCGAGAAACGGTTTTGTTTCAACAGAGGGATGGCTGGAAACATCAAC 443
||.||.||..||||.||||||||.||.||.||.|||||.||.||.||..|
BL03411___his 394 GACGCAAGGGACGGATTTGTTTCGACTGAAGGGTGGCTTGAGACCTCTTC 443
BSNT_05307___ 444 CCTTAAGGC--AACTGAACTGGGCAAAGAGCTAGCCAATGAAGGTGCGGA 491
|.|||..|| || ||.||.|||...|||||.||.|||||||||||.||
BL03411___his 444 CGTTAGAGCGGAA--GAGCTTGGCCGCGAGCTTGCAAATGAAGGTGCAGA 491
BSNT_05307___ 492 AGTCTTTATTTTTACTGACATCGCGACAGATGGAATGCTGTCAGGCCCAA 541
|||.|||||.||.||||||||.|||||.||.||||||||||||||.||.|
BL03411___his 492 AGTTTTTATCTTCACTGACATTGCGACTGACGGAATGCTGTCAGGACCTA 541
BSNT_05307___ 542 ATGTTAAAAGTACGGTCGAGCTTGCGAAGGAAACGGGGAAATCGGTGATC 591
||.|.||.|||||.||.||||||||.|.||.|||.||.|||...||.||.
BL03411___his 542 ATATCAACAGTACAGTGGAGCTTGCCAGGGCAACCGGCAAACAAGTCATT 591
BSNT_05307___ 592 GCTTCAGGCGGAGTCAGCTCCGTCACGGATCTCGAAGCCCTCGCT----- 636
||.||.|||||.|||||.||..||.|.|||||.||.||.||||||
BL03411___his 592 GCCTCCGGCGGCGTCAGTTCTCTCGCCGATCTTGAGGCGCTCGCTTCCCG 641
BSNT_05307___ 637 CGCTATGAGGCGGACGGCGTCTCTGGAGCGATCATCGGAAAAGCGCTGTA 686
|||| .||||.|||||||||||.||.||..||||||||||.||.||
BL03411___his 642 CGCT-----TCGGAAGGCGTCTCTGGCGCTATTGTCGGAAAAGCTCTTTA 686
BSNT_05307___ 687 TACCAATCAGTTTACGCTGAGTGAGGCGCTTGAAAGGGTGAAGC-GCAAA 735
||||||.||.|||||..||..|||.||||||||||||||| || |||||
BL03411___his 687 TACCAACCAATTTACCGTGGCTGAAGCGCTTGAAAGGGTG--GCGGCAAA 734
BSNT_05307___ 736 -TGA 738
|||
BL03411___his 735 GTGA 738
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