Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05309 and BL03409

See Amino acid alignment / Visit BSNT_05309 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:24
# Commandline: needle
#    -asequence dna-align/BSNT_05309___hisB.1.5803.seq
#    -bsequence dna-align/BL03409___hisB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05309___hisB-BL03409___hisB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05309___hisB-BL03409___hisB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05309___hisB
# 2: BL03409___hisB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 592
# Identity:     474/592 (80.1%)
# Similarity:   474/592 (80.1%)
# Gaps:          14/592 ( 2.4%)
# Score: 1890.0
# 
#
#=======================================

BSNT_05309___      1 ATGAGAAAAGCGGAACGCGTCAGGAAAACAAACGAAACAGATATTGAGCT     50
                     |||||||||||.|||||.|..||.|||||.||.|||||.||||||.|..|
BL03409___his      1 ATGAGAAAAGCCGAACGGGCAAGAAAAACCAATGAAACTGATATTAAATT     50

BSNT_05309___     51 GGCATTTACA-ATAGACGGCGGGGGACAAGCGGATATCAAAACAGATGTG     99
                     ..|.||| || ||.|||||.|..|||.||||||||||..||||.|||||.
BL03409___his     51 ATCCTTT-CATATTGACGGAGAAGGAAAAGCGGATATTCAAACGGATGTC     99

BSNT_05309___    100 CCGTTTATGACACATATGTTGGATTTATTCACGAAACACGGCCAATTCGA    149
                     ||||||||||||||||||.|.||||||||.||.||||||||.||.||.||
BL03409___his    100 CCGTTTATGACACATATGCTTGATTTATTTACAAAACACGGGCAGTTTGA    149

BSNT_05309___    150 TCTTTCCATTAACGCAAAAGGCGATGTTGATATAGATGATCACCACACGA    199
                     .|||||.|||.|.||.||||||||||||||.|||||.||.|||||.||||
BL03409___his    150 CCTTTCAATTGAAGCGAAAGGCGATGTTGAAATAGACGACCACCATACGA    199

BSNT_05309___    200 CTGAAGATATCGGCATCTGCTTAGGGCAGGCGCTGCTCGAAGCGTTGGGC    249
                     |.|||||||||||.||.||..|.||.||||||||..|.||||||.|.||.
BL03409___his    200 CGGAAGATATCGGAATTTGTCTCGGACAGGCGCTTTTGGAAGCGCTCGGA    249

BSNT_05309___    250 GATAAAAAAGGAATCAAACGCTACGGATCG-GCGTTTGTGCCGATGGATG    298
                     ||||||.|||||||||||||||||||.||| || .|.|||||||||||||
BL03409___his    250 GATAAACAAGGAATCAAACGCTACGGTTCGAGC-ATGGTGCCGATGGATG    298

BSNT_05309___    299 AGGCACTTGCTCAAGTTGTGATTGATTTAAGCAACCGGCCGCACTTAGAA    348
                     |.||.||.||.||.||||.|||||||.|.||||||.||||||||.|.||.
BL03409___his    299 AAGCGCTCGCCCAGGTTGCGATTGATCTGAGCAACAGGCCGCACCTCGAG    348

BSNT_05309___    349 ATGCGCGTTGATTTCCC-----GGCTGCTAAAGTCGGAACTTTCGATACG    393
                     .|..|.|.|||.|||||     ||     |||.|||||||.||.|||||.
BL03409___his    349 TTCAGAGCTGAATTCCCAAGCAGG-----AAAATCGGAACATTTGATACA    393

BSNT_05309___    394 GAGCTTGTACATGAATTTTTGTGGAAGCTTGCGCTCGAAGCCCGGATGAA    443
                     ||||||||.||||||||||||||||||.||||.||.|||||.||.|||||
BL03409___his    394 GAGCTTGTCCATGAATTTTTGTGGAAGTTTGCACTGGAAGCGCGAATGAA    443

BSNT_05309___    444 CCTGCACGTCATCGTTCATTATGGCACAAATACCCACCACATGATTGAAG    493
                     .|||||.||||||||||||||.||.||.||.||.|||||.|||||.||.|
BL03409___his    444 TCTGCATGTCATCGTTCATTACGGTACGAACACACACCATATGATCGAGG    493

BSNT_05309___    494 CCGTTTTTAAAGCGCTGGGACGTGCGCTTGATGAAGCGACAACGATCGAT    543
                     ||.|||||||||||||||||||||||||||||||||||.||..|||||||
BL03409___his    494 CCATTTTTAAAGCGCTGGGACGTGCGCTTGATGAAGCGGCATTGATCGAT    543

BSNT_05309___    544 CCGCGAGTTAAAGGAATACCGTCAACGAAAGGGATGCTGTAA    585
                     |||||.||.||.|||||.||.|||||||||||.|||||||||
BL03409___his    544 CCGCGGGTCAAGGGAATTCCATCAACGAAAGGAATGCTGTAA    585


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