Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05360 and BL03392
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_05360___minJ.1.5803.seq
# -bsequence dna-align/BL03392___swrB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05360___minJ-BL03392___swrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05360___minJ-BL03392___swrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05360___minJ
# 2: BL03392___swrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1302
# Identity: 822/1302 (63.1%)
# Similarity: 822/1302 (63.1%)
# Gaps: 198/1302 (15.2%)
# Score: 2427.0
#
#
#=======================================
BSNT_05360___ 1 GTGTCTGTTCAATGGGG-------AATTGAACTGTTAAAAAGCGCGGGCT 43
.||||.|||.|| | |||||||||.||||||.|.||.||.|
BL03392___swr 1 TTGTCAGTTGAA----GAAAGCTTAATTGAACTTTTAAAAGGAGCAGGAT 46
BSNT_05360___ 44 TGTTCTTCTTACACCCGCTTTTCTGGTTTTTTATCATCATAACCCTGGCT 93
|||||||.||.||||||||.||||..|||.|.||.||.||.|..||.|||
BL03392___swr 47 TGTTCTTTTTGCACCCGCTCTTCTATTTTATGATGATTATGAGTCTTGCT 96
BSNT_05360___ 94 TTCGGCTATGTAAGAATCAAACGGGAACGAAAAACCTTTCATACAAGAAT 143
|.||||||||...|.||||||||.|||.||||.||.||.|||||..|.||
BL03392___swr 97 TACGGCTATGCCCGGATCAAACGTGAAAGAAAGACGTTCCATACGCGTAT 146
BSNT_05360___ 144 AGCAGATATTTATGATGATCTGAAATTTACATATACAAAGGGACTGATTC 193
.|.||||||||||||.||..|.||||||||||||.|.||||||||..|..
BL03392___swr 147 TGAAGATATTTATGACGAGTTCAAATTTACATATTCCAAGGGACTTCTGG 196
BSNT_05360___ 194 CAGGTCTTCTTTTGTCAGTTATT---TTAGG---TGGACTCGGAATAT-- 235
||||.|||.|..||||..||.|| ||.|| .||.|| |.||.|
BL03392___swr 197 CAGGACTTGTACTGTCCATTGTTTCGTTCGGCTTGGGGCT--GTATCTCC 244
BSNT_05360___ 236 CGAT--TCCT-CTCGGTTTACTTGCGATTATTGCCGTTATCACTGCAGCG 282
|||| .|.| ||.|.||||.|.||| ||.|| |||||
BL03392___swr 245 CGATGGGCATGCTGGTTTTAATAGCG------GCGGT--------CAGCG 280
BSNT_05360___ 283 -----GCAGCGTTCACTCTTCGCGCAAACTG-----GATGTCTGCTGCAT 322
|||||.||.|||.| ||.||.| |.||||.||.||||
BL03392___swr 281 TTGCCGCAGCTTTAACTTT-----CAGACAGAGTCTGCTGTCAGCGGCAT 325
BSNT_05360___ 323 ATATCG-TCAGTGTGAGTATGCTGATAGGTTT-TGGACTGCAAATATATC 370
||| || |..|.|||||.||..|..|.||||| ||.|.|| ||||.| |
BL03392___swr 326 ATA-CGCTTGGCGTGAGCATCGTCGTTGGTTTATGTATTG--AATACA-C 371
BSNT_05360___ 371 AGG---CGGAGCCCTTCCTAGAGAGA----TTTCCGCAAGGATTTGCAGT 413
.|| ||||||.||| || ||||.|| .||||.
BL03392___swr 372 CGGTTTCGGAGCGCTT--------GACGCGTTTCTGC-------CGCAGC 406
BSNT_05360___ 414 TGT----------TTGGCCGGCTGTGGCTGTGTTTCTAGGTTTGCTGATT 453
||| ||||.||||||..||.||.||.||.||..|.|||.|.
BL03392___swr 407 TGTCCCTCGCGAATTGGTCGGCTGCTGCCGTCTTGCTCGGACTTCTGTTG 456
BSNT_05360___ 454 ATCACTGAAGGAGCGGTTGCTTATCGTT----CTGCGCATGTGAGAACAT 499
.|..|.||||||| |||||.||..| |.||.|||.|.|.|||.|
BL03392___swr 457 GTGGCGGAAGGAG----TGCTTGTCTATAAAACGGCACATATCAAAACGT 502
BSNT_05360___ 500 CACCGGCACTTGTCGTAAGCAGCCGCGGTTTGCCGATCGGACAGCA---- 545
|.||.||..|||||.|.||||...|.|||.|.||||||||||||||
BL03392___swr 503 CCCCTGCGATTGTCATGAGCACAAGGGGTCTCCCGATCGGACAGCAGATT 552
BSNT_05360___ 546 GCTGGCA-AACCGGGTTTGGCTTTTGCCGCTGTTCCTTCTCGTGCCCGGT 594
||.|||| |||| ||||||.|||||.||||..||||..|.||.||.
BL03392___swr 553 GCGGGCAGAACC-----TGGCTTCTGCCGTTGTTTATTCTTATTCCGGGA 597
BSNT_05360___ 595 AATGGTTTAGAATCGCACC--TTAGCTGGTGGCCCGTGTTTACGGTTCCC 642
.|||...|.|||| ||.| ||...||||||||.||.||..|..||..|
BL03392___swr 598 CATGCGATCGAAT--CATCTGTTCCGTGGTGGCCTGTTTTGTCATTTAAC 645
BSNT_05360___ 643 GGCGGCTCATTCCATTT----TC-TATGGATTCCTTACTTTGTCGGATTT 687
|||||| ||| || |.||||||||.||.||..||||.||.
BL03392___swr 646 GGCGGC--------TTTGAGCTCTTGTGGATTCCGTATTTCATCGGCTTC 687
BSNT_05360___ 688 GGACAAAGGGTACAGGGATCGCTGCC---TGAAACGAGTATAAGGATCAC 734
||.||||||||.||.||||||||.|| |||| ||.||.|..||.||
BL03392___swr 688 GGCCAAAGGGTTCAAGGATCGCTTCCGATTGAA---AGCATTAAAATTAC 734
BSNT_05360___ 735 AGCGAAACGCGTTTGTATTCTCGGTCTTGCCGTC--------GCAGTTCT 776
||||||.||| ||...||..||||.|.|| ||.|.||.
BL03392___swr 735 AGCGAAGCGC------ATCAGCGTGCTTGGCATCATCATTCTGCTGATCG 778
BSNT_05360___ 777 CGGTGCAGCGAGCTTACTGTGGACGCCGCTT------------GCAGGTG 814
|| ||.|..|||.||..||||||.|||||| ||.||.|
BL03392___swr 779 CG--GCCGGAAGCATATGGTGGACTCCGCTTGCCGCCCTTGCCGCCGGAG 826
BSNT_05360___ 815 CAGCGGTCTGTACTGCTTTGTTAGGGCGTATTT-TTCTGTCCATAAAGCA 863
|||||.|| || .|..|||||.|.||| |.||| .|||||
BL03392___swr 827 CAGCGATC------GC--AGGAAGGGCCTTTTTATCCTG-----GAAGCA 863
BSNT_05360___ 864 AAGAGTGAATGATAACGCGGCTCCGTTTTATTTCTCGAAAAGGGATCAGG 913
..|..||||.||.||..|.||.||.||..||||.||.||.||.||.||||
BL03392___swr 864 GCGGATGAACGACAATTCCGCCCCTTTCCATTTTTCAAAGAGAGACCAGG 913
BSNT_05360___ 914 GCTTAATGGTGCTTGGGATTATCCCCAATACGCCGGCTGAGGATCTGGAA 963
||||.||||||||.||||||||.||.||.||||||||.|..|||||.|..
BL03392___swr 914 GCTTGATGGTGCTCGGGATTATTCCGAACACGCCGGCAGCCGATCTCGGT 963
BSNT_05360___ 964 TTGAAAATCGGGGAAATCATAACGAAAGTCAATGGTATACCGGTTAAGAA 1013
.|.||.|||||.||||||||.|||||.|||||.||.||....||.||.||
BL03392___swr 964 CTCAAGATCGGCGAAATCATCACGAAGGTCAACGGGATTGAAGTGAAAAA 1013
BSNT_05360___ 1014 CGTTTCTGATTTCTATGAAGCGCTCCAGCATAACCGTGCATACGTGAAGC 1063
.|...|.||.|||||.|||||||||||..|.|||.|.||.|.|.|.||||
BL03392___swr 1014 TGCGGCGGACTTCTACGAAGCGCTCCAAAAGAACAGGGCTTTCTTCAAGC 1063
BSNT_05360___ 1064 TTGAAATTATCGGTTTGAATGGAGAAATTCGTTTTGACCAGCGAGCTTCT 1113
|||||.|..|||||||.||....||.|||||||||||.||..||||||||
BL03392___swr 1064 TTGAAGTCGTCGGTTTAAACAATGAGATTCGTTTTGAACAAAGAGCTTCT 1113
BSNT_05360___ 1114 TATGAAGGAGAACATCATGAATTGGGCATCCTCTTCGTAA------AGGA 1157
||||||||.||.||||||||..|.||||||.||||.|||| ||||
BL03392___swr 1114 TATGAAGGGGAGCATCATGAGCTCGGCATCATCTTTGTAAAAGAAGAGGA 1163
BSNT_05360___ 1158 TGACCGTGAAGA-------CGAAGCAGCCGCTTCTG--------GATCAT 1192
|| |.||||.|| |||.|||||.||.||.| || ||
BL03392___swr 1164 TG-CGGTGATGAAGCATGCCGAGGCAGCAGCCTCAGCAGAAACAGA--AT 1210
BSNT_05360___ 1193 AA 1194
||
BL03392___swr 1211 AA 1212
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