Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05361 and BL03391
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_05361___yvzD.1.5803.seq
# -bsequence dna-align/BL03391___swrA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05361___yvzD-BL03391___swrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05361___yvzD-BL03391___swrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05361___yvzD
# 2: BL03391___swrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 360
# Identity: 258/360 (71.7%)
# Similarity: 258/360 (71.7%)
# Gaps: 30/360 ( 8.3%)
# Score: 939.0
#
#
#=======================================
BSNT_05361___ 1 ------------------GTGCGTGAAAAAAAATATTATGAATTAGTGGA 32
|||.|.||.||||||||.||||||||||||||
BL03391___swr 1 TTGAAAAGGGCAAGTATTGTGAGAGAGAAAAAATACTATGAATTAGTGGA 50
BSNT_05361___ 33 ACAATTAAAAGACAGAACACAAGACGTAACATTTTCAGCTACAAAAGCAC 82
.||.|||||||...||.||||||||||.||.|||||.||||||||.|||.
BL03391___swr 51 GCAGTTAAAAGTTCGATCACAAGACGTTACGTTTTCCGCTACAAAGGCAG 100
BSNT_05361___ 83 TAAGTCTTCTTATGCTGTTCAGCAGATATTTGGTCAATTACACCAATGTC 132
||.|..|.||||||||||||||||||||..|.||.||.|||||....|||
BL03391___swr 101 TAGGATTGCTTATGCTGTTCAGCAGATACCTCGTGAACTACACTTCGGTC 150
BSNT_05361___ 133 GAATCAGT----AAATGACATTAATGAGGAATGCGCCAAACATTATTTTA 178
||| ||| || ||.|||||||||||.|||||..|||.||||||.|
BL03391___swr 151 GAA--AGTGTGGAA--GATATTAATGAGGATTGCGCGGAACTTTATTTCA 196
BSNT_05361___ 179 ACTACTTAATGAAAAACCATAAGCGATTAGGAATTAATCTGACAGATATA 228
|||||||.|||.|.|||||.|||||..|.||.||.||||||||.||.||.
BL03391___swr 197 ACTACTTGATGGACAACCACAAGCGGCTCGGCATCAATCTGACCGACATC 246
BSNT_05361___ 229 AAAAGGTCGATGCATCTAATCAGCGGGTTAT--TGGATGTGGATGTAAAC 276
||..||||.|||||.||.|| || |.|.||| |.|||||.||.||.||.
BL03391___swr 247 AAGCGGTCAATGCAGCTGAT-AG-GAGATATTCTTGATGTCGAGGTCAAT 294
BSNT_05361___ 277 CACTATTTAAAGGATTTTTCACTATCGAATGTCACGCTGTGGATGACGCA 326
||.||..|.||.||||||||..|.||||||||.|||||.|||||||..||
BL03391___swr 295 CATTACCTGAAAGATTTTTCTTTGTCGAATGTGACGCTTTGGATGAGCCA 344
BSNT_05361___ 327 AGAGAGATAA 336
.||||.||||
BL03391___swr 345 GGAGAAATAA 354
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