Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05370 and BL03381
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_05370___secA.1.5803.seq
# -bsequence dna-align/BL03381___secA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05370___secA-BL03381___secA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05370___secA-BL03381___secA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05370___secA
# 2: BL03381___secA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2535
# Identity: 2052/2535 (80.9%)
# Similarity: 2052/2535 (80.9%)
# Gaps: 18/2535 ( 0.7%)
# Score: 8286.5
#
#
#=======================================
BSNT_05370___ 1 ATGCTTGGAATTTTAAATAAAATGTTTGATCCAACAAAACGTACGCTGAA 50
|||||||||||||||||||||.||||||||||.||||||||.|||||.|.
BL03381___sec 1 ATGCTTGGAATTTTAAATAAAGTGTTTGATCCGACAAAACGCACGCTCAG 50
BSNT_05370___ 51 TAGATACGAAAAAATTGCTAACGATATTGATGCGATTCGCGG-AGACTAT 99
..|.||.|||||.|..||.|||||.||||||||| .||..|| ||| |||
BL03381___sec 51 CCGTTATGAAAAGAAAGCGAACGAGATTGATGCG-CTCAAGGCAGA-TAT 98
BSNT_05370___ 100 -GAAAATCTCTCTGACGACGCGTTGAAACATAAAACAATTGAATTTAAAG 148
||.||.||.||.|||||.||.|||||.||.||.||.||.||.||.||||
BL03381___sec 99 AGAGAAGCTTTCAGACGAAGCTTTGAAGCAAAAGACGATCGAGTTCAAAG 148
BSNT_05370___ 149 AGCGTCTTGAAAAAGGGGCGACAACG---GATGATCTTCTTGTTGAAGCT 195
||||.||||||||| ||||| |||| ||.||||||.|.||||||||.
BL03381___sec 149 AGCGCCTTGAAAAA--GGCGA-AACGGTTGACGATCTTTTGGTTGAAGCG 195
BSNT_05370___ 196 TTCGCTGTTGTTCGAGAAGCTTCACGCCGCGTAACAGGTATGTTTCCGTT 245
||.||.|||||..|.||||||||.||.|||||.|||||.|||||||||||
BL03381___sec 196 TTTGCCGTTGTCAGGGAAGCTTCCCGGCGCGTGACAGGCATGTTTCCGTT 245
BSNT_05370___ 246 TAAAGTCCAGCTCATGGGGGGCGTAGCGCTTCATGACGGAAATATCGCGG 295
|||.||.|||||.|||||||||||.||.||||||||.||.||||||||.|
BL03381___sec 246 TAAGGTTCAGCTGATGGGGGGCGTCGCCCTTCATGAAGGGAATATCGCCG 295
BSNT_05370___ 296 AAATGAAAACAGGGGAAGGGAAAACATTAACGTCTACTCTGCCTGTTTAT 345
||||||||||.||||||||.|||||..|.||.||.||..||||.|||||.
BL03381___sec 296 AAATGAAAACGGGGGAAGGTAAAACGCTGACTTCCACAATGCCCGTTTAC 345
BSNT_05370___ 346 TTAAATGCGTTAACAGGTAAAGGCGTACACGTCGTGACTGTCAACGAATA 395
||.||.||..|..||||.||||||||.|||||||||||.|||||||||||
BL03381___sec 346 TTGAACGCTCTGTCAGGGAAAGGCGTTCACGTCGTGACGGTCAACGAATA 395
BSNT_05370___ 396 CTTGGCAAGCCGTGACGCTGAACAAATGGGGAAAATTTTCGAGTTTCTCG 445
|.||||.|||||.|||||||||.|.|||||||||||.||.||||||||||
BL03381___sec 396 CCTGGCGAGCCGCGACGCTGAAGAGATGGGGAAAATCTTTGAGTTTCTCG 445
BSNT_05370___ 446 GTCTGACTGTCGGCTTGAATTTAAACTCAATGTCAAAAGACGAAAAACGG 495
|.|||||.||||||.|.||..|.|||....|||||||||||||.||.||.
BL03381___sec 446 GGCTGACGGTCGGCCTAAACCTGAACAGCCTGTCAAAAGACGAGAAGCGT 495
BSNT_05370___ 496 GAAGCTTATGCAGCTGACATTACTTACTCTACAAACAATGAGCTTGGCTT 545
|||||.||||||||.||.|||||.||.|||||.||.||||||||||||||
BL03381___sec 496 GAAGCCTATGCAGCAGATATTACGTATTCTACGAATAATGAGCTTGGCTT 545
BSNT_05370___ 546 CGACTATTTGCGTGACAATATGGTTCTTTATAAAGAGCAGATGGTTCAGC 595
.|||||.|||||.|||||.|||||.|||||||||||||||||||||||||
BL03381___sec 546 TGACTACTTGCGCGACAACATGGTGCTTTATAAAGAGCAGATGGTTCAGC 595
BSNT_05370___ 596 GCCCGCTTCATTTTGCGGTAATAGATGAAGTTGACTCTATTTTAATTGAT 645
|||||||||||||||||||.||.||||||||.|||||.|||||.||.|||
BL03381___sec 596 GCCCGCTTCATTTTGCGGTCATCGATGAAGTCGACTCCATTTTGATCGAT 645
BSNT_05370___ 646 GAAGCGAGAACACCTCTTATCATTTCTGGACAAGCTGCCAAATCCACTAA 695
|||||.|||||.||.||.|||||||||||||||||.|||||||||||.||
BL03381___sec 646 GAAGCAAGAACGCCGCTCATCATTTCTGGACAAGCGGCCAAATCCACCAA 695
BSNT_05370___ 696 GCTGTACGTACAGGCAAATGCTTTTGTCCGTACGTTAAAAGCGGAGAAGG 745
|||.||.||.|||||.|||||.||||||||.|||.||||||||||..|||
BL03381___sec 696 GCTTTATGTTCAGGCCAATGCGTTTGTCCGCACGCTAAAAGCGGATCAGG 745
BSNT_05370___ 746 ATTACACGTACGATATCAAAACAAAAGCTGTACAGCTTACTGAAGAAGGA 795
|.|||||.||||||.|.||||||||||..||.|||||.||||||||.||.
BL03381___sec 746 ACTACACATACGATGTGAAAACAAAAGGCGTTCAGCTGACTGAAGAGGGG 795
BSNT_05370___ 796 ATGACGAAGGCGGAAAAAGCGTTCGGCATCGATAACCTCTTTGATGTGAA 845
|||||.||.||.|||||.||.||.||||||||.|||.|.|||||.||...
BL03381___sec 796 ATGACAAAAGCTGAAAAGGCATTTGGCATCGAAAACTTGTTTGACGTCCG 845
BSNT_05370___ 846 GCATGTCGCGCTCAACCACCATATCAACCAGGCCTTAAAAGCTCACGTTG 895
.||||||||..|.|||||.|||||...||||||..|.|||||.||.|..|
BL03381___sec 846 CCATGTCGCCTTAAACCATCATATTGCCCAGGCGCTGAAAGCCCATGCGG 895
BSNT_05370___ 896 CGATGCAAAAGGACGTTGACTATGTAGTGGAAGACGGACAGGTTGTTATT 945
|||||||.||.|||||.|||||.||.||.||||||||.|||||.|||||.
BL03381___sec 896 CGATGCATAAAGACGTCGACTACGTCGTCGAAGACGGTCAGGTCGTTATC 945
BSNT_05370___ 946 GTTGATTCCTTCACGGGACGTCTGATGAAAGGCCGCCGCTACAGTGAGGG 995
||.||.||.||.||.||.|||.||||||||||||||||||||||.||.||
BL03381___sec 946 GTCGACTCTTTTACAGGCCGTTTGATGAAAGGCCGCCGCTACAGCGACGG 995
BSNT_05370___ 996 GCTTCACCAAGCGATTGAAGCGAAGGAAGGGCTTGAGATTCAAAACGAAA 1045
.||||||||.||.|||||||||||||||||.||||||||.|||||.||.|
BL03381___sec 996 ACTTCACCAGGCCATTGAAGCGAAGGAAGGCCTTGAGATCCAAAATGAGA 1045
BSNT_05370___ 1046 GCATGACCTTGGCGACGATTACGTTCCAAAACTACTTCCGAATGTACCAA 1095
|||||||..|.||||||||.||.|||||.|||||.|||||||||||..||
BL03381___sec 1046 GCATGACGCTCGCGACGATCACCTTCCAGAACTATTTCCGAATGTATGAA 1095
BSNT_05370___ 1096 AAACTTGCCGGTATGACGGGTACAGCTAAGACAGAGGAAGAAGAATTCCG 1145
|||.|.||.||.|||||||||||.||.||.||.||.||||||||||||||
BL03381___sec 1096 AAATTGGCTGGAATGACGGGTACCGCAAAAACGGAAGAAGAAGAATTCCG 1145
BSNT_05370___ 1146 CAACATCTACAACATGCAGGTTGTCACGATCCCTACCAACAGGCCTGTTG 1195
||||||||||||||||||||||||.|||||.||.|||||||.|||..|||
BL03381___sec 1146 CAACATCTACAACATGCAGGTTGTTACGATTCCGACCAACAAGCCGATTG 1195
BSNT_05370___ 1196 TCCGTGATGACCGTCCTGATTTAATTTACCGCACGATGGAAGGAAAGTTT 1245
.|||.||||||||.||.||||||||||||||.||.|||||||||||.|||
BL03381___sec 1196 CCCGCGATGACCGACCGGATTTAATTTACCGGACCATGGAAGGAAAATTT 1245
BSNT_05370___ 1246 AAGGCAGTTGCGGAGGATGTCGCACAGCGTTACATGACGGGACAGCCTGT 1295
||.||.|||||.|||||||||||.|||||.||.|||...||||||||.||
BL03381___sec 1246 AAAGCTGTTGCAGAGGATGTCGCCCAGCGCTATATGGTCGGACAGCCGGT 1295
BSNT_05370___ 1296 TCTAGTCGGTACGGTTGCCGTTGAAACATCTGAATTGATTTCTAAGCTGC 1345
.||.||||||||||||||.||||||||||||||||||||.||.|.|||.|
BL03381___sec 1296 ACTTGTCGGTACGGTTGCGGTTGAAACATCTGAATTGATATCAAGGCTCC 1345
BSNT_05370___ 1346 TTAAAAACAAAGGAATTCCGCATCAAGTGTTAAATGCCAAAAACCATGAA 1395
|||||||.||||||||.||||||||||||||.||.||.|||||||||||.
BL03381___sec 1346 TTAAAAATAAAGGAATCCCGCATCAAGTGTTGAACGCGAAAAACCATGAG 1395
BSNT_05370___ 1396 CGTGAAGCGCAGATCATTGAAGAGGCCGGCCAAAAAGGCGCAGTTACGAT 1445
||.|||||.|||||.||.|||||.|||||.|||||||||||.||.||.||
BL03381___sec 1396 CGGGAAGCTCAGATTATCGAAGATGCCGGGCAAAAAGGCGCGGTCACCAT 1445
BSNT_05370___ 1446 TGCGACTAACATGGCGGGGCGCGGAACGGACATTAAGCTTGGCGAAGGTG 1495
.|||||.|||||||||||.||||||||||||||.||||||||||||||||
BL03381___sec 1446 CGCGACCAACATGGCGGGCCGCGGAACGGACATCAAGCTTGGCGAAGGTG 1495
BSNT_05370___ 1496 TAAAAGAGCTTGGCGGACTCGCTGTTGTCGGAACAGAACGACATGAATCA 1545
|||||||||||||||||||.||.||..||||.||.|||||.|||||||||
BL03381___sec 1496 TAAAAGAGCTTGGCGGACTGGCCGTCATCGGTACGGAACGCCATGAATCA 1545
BSNT_05370___ 1546 CGCCGGATTGACAATCAGCTTCGAGGTCGTTCCGGACGTCAGGGAGACCC 1595
.|.|||||||||||.|||||.||.||.|||||.||.||||||||.|||||
BL03381___sec 1546 AGGCGGATTGACAACCAGCTGCGCGGACGTTCAGGCCGTCAGGGGGACCC 1595
BSNT_05370___ 1596 GGGGATTACTCAATTTTATCTTTCTATGGAAGATGAATTGATG---CGCA 1642
.||.||.||.|||||||||||.||.||||||||||||||.||| |||
BL03381___sec 1596 TGGTATCACCCAATTTTATCTGTCCATGGAAGATGAATTAATGAAACGC- 1644
BSNT_05370___ 1643 GATTCGGAGCTGAGCGGACAATGGCGATGCTGGACCGCTTCGGCATGGAC 1692
|||||.||.||||||||.|||||||||||.|||||||||||.||||||
BL03381___sec 1645 --TTCGGCGCAGAGCGGACGATGGCGATGCTTGACCGCTTCGGAATGGAC 1692
BSNT_05370___ 1693 GACTCTACTCCAATCCAAAGCAAAATGGTATCTCGCGCGGTTGAATCGTC 1742
||.||.||.||.||.||.|||||.|||||.||..|.|||||.|||||.||
BL03381___sec 1693 GATTCGACGCCGATACAGAGCAAGATGGTTTCAAGAGCGGTCGAATCTTC 1742
BSNT_05370___ 1743 TCAAAAACGAGTCGAAGGCAATAACTTCGATTCTCGTAAACAGCTTCTGC 1792
.||.||.||.||.||||||||.|||||.|||.|.|||||.||||||||||
BL03381___sec 1743 ACAGAAGCGTGTGGAAGGCAACAACTTTGATGCCCGTAAGCAGCTTCTGC 1792
BSNT_05370___ 1793 AATATGATGATGTTCTCCGCCAGCAGCGTGAGGTCATTTATAAGCAGCGC 1842
||||.|||||.||.||||||||||||||.||.|||||.|||||.||||||
BL03381___sec 1793 AATACGATGACGTGCTCCGCCAGCAGCGCGAAGTCATCTATAAACAGCGC 1842
BSNT_05370___ 1843 TTTGAAGTCATTGACTCTGAAAACCTGCGTGAAATCGTTGAAAATATGAT 1892
|||||.|||||.||.||.||.|||||.||....|||||.|||||||||||
BL03381___sec 1843 TTTGAGGTCATCGATTCCGATAACCTCCGCTCCATCGTCGAAAATATGAT 1892
BSNT_05370___ 1893 CAAGTCTTCTCTCGAACGCGCAATTGCAGCCTATACGCC-AAGAGAAGAG 1941
.||..||||.|||||.||.||..||||..|.|||||||| ||| |||||.
BL03381___sec 1893 TAAAGCTTCACTCGAGCGGGCTGTTGCTTCATATACGCCGAAG-GAAGAT 1941
BSNT_05370___ 1942 CTTCCTGAGGAGTGGAAGCTTGACGGTCTAGTTGATCTTATCAACACAAC 1991
||.|||||.||||||||.||||||||.||.||.||.|||.|.||..|.|.
BL03381___sec 1942 CTGCCTGAAGAGTGGAATCTTGACGGCCTTGTGGAGCTTGTAAATGCGAA 1991
BSNT_05370___ 1992 TTATCTTGATGAAGGTGCGCTTGAGAAGAGCGATATCTTCGGGAAAGAAC 2041
||..|||||||||||||...|.|||||.|||||.||.|||||.|||||.|
BL03381___sec 1992 TTTCCTTGATGAAGGTGGAGTGGAGAAAAGCGACATTTTCGGAAAAGAGC 2041
BSNT_05370___ 2042 CGGATGAAATGCTTGAGCTCATTATGGATCGCATCATCACAAAATATAAT 2091
|.||.||.||....|||||||||...||.|||||||..||.|||||..||
BL03381___sec 2042 CCGAGGAGATTACAGAGCTCATTTACGACCGCATCAAAACGAAATACGAT 2091
BSNT_05370___ 2092 GAGAAGGAAGAGCAATTCGGCAAAGAGCAAATGCGCGAATTCGAAAAAGT 2141
|||||.|||||||..|.||||...||.||||||||||||||.||.|||||
BL03381___sec 2092 GAGAAAGAAGAGCGGTACGGCTCTGAACAAATGCGCGAATTTGAGAAAGT 2141
BSNT_05370___ 2142 TATCGTTCTTCGTGCCGTTGATTCTAAATGGATGGATCATATTGATGCGA 2191
.||||||||.||.|..||.|||.|.||||||||||||||.||.|||||||
BL03381___sec 2142 CATCGTTCTCCGCGAAGTGGATACGAAATGGATGGATCACATCGATGCGA 2191
BSNT_05370___ 2192 TGGATCAGCTTCGCCAAGGGATTCACCTTCGTGCTTACGCGCAGACGAAC 2241
||||||||||.||.|||||.|||||.||.||.|||||.||.|||||.|||
BL03381___sec 2192 TGGATCAGCTGCGGCAAGGAATTCATCTGCGCGCTTATGCTCAGACAAAC 2241
BSNT_05370___ 2242 CCTCTTCGTGAGTATCAAATGGAAGGTTTTGCGATGTTTGAGCATATGAT 2291
||.||.||.||||||||.||||||||.|||||.||||||||..|.|||||
BL03381___sec 2242 CCGCTCCGCGAGTATCAGATGGAAGGCTTTGCAATGTTTGAAAACATGAT 2291
BSNT_05370___ 2292 TGAATCAATTGAGGACGAGGTCGCAAAATTTGTGATGAAAGCTGAGATTG 2341
.|...|.|||||.||.||.||.||.|||||.||.|||||.|||||.||.|
BL03381___sec 2292 CGCGGCGATTGAAGATGATGTAGCCAAATTCGTCATGAAGGCTGAAATCG 2341
BSNT_05370___ 2342 AAAACAATCTGGAGCGTGAAGAGGTTGTACAAGGCCAAACAACAGCTCAT 2391
|||||||.||.|||||.||||||||..|.|||||.||.||.|||||.|||
BL03381___sec 2342 AAAACAACCTTGAGCGCGAAGAGGTCATTCAAGGACAGACGACAGCCCAT 2391
BSNT_05370___ 2392 CAGCCGCAAGAAGGCGACGATAACAAAAAAGCAAAGAAAGCACCGGTTCG 2441
||||||.||||||||||.||..|.|||.||||.||||||..||||||.||
BL03381___sec 2392 CAGCCGAAAGAAGGCGATGAGGAAAAACAAGCGAAGAAAAAACCGGTCCG 2441
BSNT_05370___ 2442 CAAAGTGGTTGATATCGGCCGAAATGCCCCATGCCACTGCGGAAGCGGGA 2491
|||||.|||.||||||||.||.||||..||.|||.|||||||||||||.|
BL03381___sec 2442 CAAAGCGGTGGATATCGGACGCAATGATCCTTGCTACTGCGGAAGCGGAA 2491
BSNT_05370___ 2492 AAAAATATAAAAATTGCTGCGGCCGTACTGAATAG 2526
|||||||||||||.||||||||..|.||.|||||.
BL03381___sec 2492 AAAAATATAAAAACTGCTGCGGAAGAACAGAATAA 2526
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