Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05372 and BL03380

See Amino acid alignment / Visit BSNT_05372 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:30
# Commandline: needle
#    -asequence dna-align/BSNT_05372___yvyD.1.5803.seq
#    -bsequence dna-align/BL03380___yvyD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05372___yvyD-BL03380___yvyD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05372___yvyD-BL03380___yvyD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05372___yvyD
# 2: BL03380___yvyD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 586
# Identity:     439/586 (74.9%)
# Similarity:   439/586 (74.9%)
# Gaps:          38/586 ( 6.5%)
# Score: 1646.5
# 
#
#=======================================

BSNT_05372___      1 ---ATGAACTATAACATCAGAGGAGAAAATATTGAAGTGACACCCGCGTT     47
                        |||.|.|..|||.|||||||||||||||||||.||.|||||.|||||
BL03380___yvy      1 TTGATGGAGTTCAACGTCAGAGGAGAAAATATTGAGGTAACACCAGCGTT     50

BSNT_05372___     48 AAAGGATCATGTCGAGAGGAAGATCGGCAAGCTGGAGCGCTATTTTGACC     97
                     ||..||.||.|||||||.||||||.||.|||||.|||||.||||||||..
BL03380___yvy     51 AAGAGAACACGTCGAGAAGAAGATTGGAAAGCTTGAGCGTTATTTTGAAA    100

BSNT_05372___     98 ATAGCGTGGATGCTGA-TGTGAACGTCAACTTGAAGTTTTACAATGACAA    146
                     |||.|||.||||| || |||..||||||||||.||.||.||||||||..|
BL03380___yvy    101 ATAACGTTGATGC-GATTGTTCACGTCAACTTAAAATTCTACAATGATCA    149

BSNT_05372___    147 GGAGTCTAAGGTTGAGGTTACGATTCCGATGACAGATCTGGCGCTTCGGT    196
                     |||.||.|||||.||.||.||.|||||.||||||||.||..|.||.||..
BL03380___yvy    150 GGAATCAAAGGTGGAAGTGACAATTCCAATGACAGACCTCTCTCTCCGTG    199

BSNT_05372___    197 CCGAGGTGCATAACGAGGATATGTACAACGCAATTGATCTCGCAACAAAC    246
                     |.||.||.||..||||.|||||||||||.|||||.|||||||||||.|||
BL03380___yvy    200 CGGAAGTTCACCACGAAGATATGTACAATGCAATCGATCTCGCAACGAAC    249

BSNT_05372___    247 AAACTGGAACGTCAAATCCGTAAGCATAAAACGAAAGTAAACCGTAAATT    296
                     |||||||||||||||||.||.|||||||||||.|||||.|||||.|||||
BL03380___yvy    250 AAACTGGAACGTCAAATACGCAAGCATAAAACAAAAGTTAACCGGAAATT    299

BSNT_05372___    297 CCGTGAGCAGGGCTCTCCAAA--ATATTTATTG-----GCAAACGGTCTT    339
                     |||.||..|.||.|||.|.||  ||.||| |||     |.||||      
BL03380___yvy    300 CCGCGAAAAAGGTTCTTCGAAGCATGTTT-TTGCAGAAGGAAAC------    342

BSNT_05372___    340 GGC-TCTGATACAGATATTGCGGTTCAGGATGACATAGAAGAGGAGGAG-    387
                     ||| ||.||       |..||.||.|||||.|||||.||.||.||..|| 
BL03380___yvy    343 GGCATCGGA-------ACGGCCGTGCAGGAAGACATTGAGGATGAACAGC    385

BSNT_05372___    388 ---AGCTTGGATATCGTCCGTCAGAAACGCTTTAATTTAAAGCCGATGGA    434
                        ||.||       ||||||||.||.|||||||||||||||||||||||
BL03380___yvy    386 CGCAGGTT-------GTCCGTCAAAAGCGCTTTAATTTAAAGCCGATGGA    428

BSNT_05372___    435 TAGTGAAGAAGCGATCCTGCAAATGAATATGCTCGGCCATAATTTCTTTG    484
                     ||.||||||||||||..|.||||||||||||||.||.||.|..|||||||
BL03380___yvy    429 TAATGAAGAAGCGATTTTACAAATGAATATGCTTGGACACAGCTTCTTTG    478

BSNT_05372___    485 TTTTCACAAATGCGGAAACAAACCTTACAAATGTCGTGTACCGCAGAAAT    534
                     |.|||||.||.||.|||||.||.||.||.|||||.||.|||||.|||||.
BL03380___yvy    479 TATTCACGAACGCCGAAACCAATCTGACCAATGTGGTCTACCGAAGAAAC    528

BSNT_05372___    535 GACGGGAAATATGGCTTAATTGAACCGACTGAATAA    570
                     ||.||.|||||.||.||.||.||.||||..||||||
BL03380___yvy    529 GATGGAAAATACGGTTTGATCGAGCCGAACGAATAA    564


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