Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05377 and BL03376
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_05377___fliD.1.5803.seq
# -bsequence dna-align/BL03376___fliD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05377___fliD-BL03376___fliD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05377___fliD-BL03376___fliD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05377___fliD
# 2: BL03376___fliD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1603
# Identity: 1042/1603 (65.0%)
# Similarity: 1042/1603 (65.0%)
# Gaps: 227/1603 (14.2%)
# Score: 3200.0
#
#
#=======================================
BSNT_05377___ 1 ATGGTCACAAGAATAACAGGTCTGGCGTCAGGAATGGATATAGATGATAT 50
||||..|..||||||.||||..|.||.|||||.|||||||||||.||.||
BL03376___fli 1 ATGGCGATCAGAATATCAGGATTAGCTTCAGGTATGGATATAGACGACAT 50
BSNT_05377___ 51 TGT-ATCAAAGCTGATGCAGACAGAAAGAGCCCCGCTTGATAAGCTGAAG 99
||| |.|||| .|.|||.||||.||..|.|.|||||||||||||||.|..
BL03376___fli 51 TGTCAGCAAA-TTAATGAAGACGGAGCGCGTCCCGCTTGATAAGCTTACT 99
BSNT_05377___ 100 CAAAAAAAGCAGACTCTTGAATGGCAGCGTGACAGCTATCGTGAAGTCAA 149
|||||.||.||||||.|.|||||||||||.|||||||||||||||.||||
BL03376___fli 100 CAAAAGAAACAGACTTTGGAATGGCAGCGCGACAGCTATCGTGAAATCAA 149
BSNT_05377___ 150 TACAAAAATAAAAGAATTGCAAGATT---------ATATG-TCTAAAAAT 189
|||.|||||.|||||.|||||.||.| .|||| ||
BL03376___fli 150 TACGAAAATTAAAGATTTGCAGGAATCCATCAACCTTATGCTC------- 192
BSNT_05377___ 190 ACGTTGACATATCCTAGCACGTATCAGAGC-AAAACTGTGACAAGCTCTA 238
|| |||.|||||||| |.|.|| ||||..||||||||||||.
BL03376___fli 193 -CG--------TCCCAGCACGTA-CGGCGCGAAAAAGGTGACAAGCTCTG 232
BSNT_05377___ 239 ATGAGTCTGTGTTAACTGCTACAGGAA-----------GCGCAAGTGCAC 277
|.|||||.|.|.|.||.||.|||||.| |||..|| ||||
BL03376___fli 233 ACGAGTCGGCGGTTACGGCAACAGGCACCACGAATGCGGCGTCAG-GCAC 281
BSNT_05377___ 278 ---CAAACTCTTCTTCTACTGTTGAAGTGGCGAGCTTGGCAACCGCAGCA 324
|.||.|| || |.||| ||||.||.||.||.
BL03376___fli 282 GATCCAAGTC--------------AA----CAAGC-TGGCGACTGCGGCC 312
BSNT_05377___ 325 ACGTATAAGGCAAACAAT-----------------TATA-CGGGATACAC 356
||.|||| ||| |||| |||||
BL03376___fli 313 ACCTATA--------AATCTTCCAGCCTTTCAGGGTATACCGGGA----- 349
BSNT_05377___ 357 TCAAGGCGATTACAATTTGGCATTTAACGTT----GT---TGCGCCTGGC 399
|||||.|.| .|| ||||.|| || .||.|||||.
BL03376___fli 350 -----GCGATCAAA----CGC---TAACTTTCCAAGTGACAGCACCTGGA 387
BSNT_05377___ 400 GAAACAACGGCAAAAACAG-TGAACATTAGTGTGACGAGCGCCGATACGA 448
|||||.||.||.||||.|| |||| ||.||.||.|..|||.|.||||||.
BL03376___fli 388 GAAACGACTGCGAAAAAAGTTGAA-ATCAGCGTCAGCAGCACGGATACGC 436
BSNT_05377___ 449 TTGATAATGTGATTTCTAAACTTAACAGCTCAGATCTAGGAGTATCAGCT 498
|.|||.|..|..||||.|||.|.||||..|||.||.|.||.|||.|.|||
BL03376___fli 437 TGGATGACATCGTTTCCAAAGTCAACAAATCAAATTTGGGCGTAACCGCT 486
BSNT_05377___ 499 TTTAAAGATAAAATTTGGAATGGTACAGAGTACGTAGAAACAATTGCGTT 548
.|.|||||.||.||||..||.|||.|.||.||.||||||||.||.||.||
BL03376___fli 487 ATGAAAGAAAAGATTTATAACGGTTCTGAATATGTAGAAACGATCGCTTT 536
BSNT_05377___ 549 TTCTTCTAAAGCAACAGGTGCAGGGGGCAGTATACAGGCAGCAGACTCTG 598
..|.||.||||||||.||.|||||||||||.|||||||||||.||...||
BL03376___fli 537 CACATCAAAAGCAACCGGCGCAGGGGGCAGCATACAGGCAGCTGATGATG 586
BSNT_05377___ 599 CTACAGCTGA-CTTTATGTCCGGTCAGCTTGGTTTTTCTTTGGATGCTGA 647
|.||.|| || ||||||||||..||||||.||.|||.|..|.|||||.||
BL03376___fli 587 CGACGGC-GAGCTTTATGTCCAATCAGCTCGGATTTGCGCTTGATGCCGA 635
BSNT_05377___ 648 TAATAAGCTCACTGCTTACAAAGAAGGCACAAATGCCAAAGTTACAATCA 697
.||.|||||.||.||...|.|||..|||..|||.|||.|||||...||||
BL03376___fli 636 CAACAAGCTGACAGCCAGCCAAGCCGGCCAAAACGCCGAAGTTGTCATCA 685
BSNT_05377___ 698 ACGGCTTTGAAATGGAGAAGCTGACAAACAATTTCACGGTGAATGGTGTT 747
||||.||..|.||.||||||...||.|||||.||.||.||.|||..|||.
BL03376___fli 686 ACGGATTGCAGATTGAGAAGACAACGAACAACTTTACCGTTAATAATGTG 735
BSNT_05377___ 748 ACTTACTC-GATTAAAAATACAACTGCAGCCACAGGCCCTGTTACCACAT 796
||.|| || |.|.||.|||||.|| ..||| ||||.||| |
BL03376___fli 736 ACATA-TCAGTTGAAGAATACGAC-----AAACA-GCCCCGTT------T 772
BSNT_05377___ 797 C------TGTTTCTACTGATGTTGACGGAATTTATAACCAAATCAAAGAG 840
| |||..|.||||||||||||||.||||||.|..|.||.|||||.
BL03376___fli 773 CGCTTGATGTAGCGACTGATGTTGACGGGATTTATGAAAAGATTAAAGAC 822
BSNT_05377___ 841 TTTGT-----AGATAAATACAATGAAATGGTTGACAGCCTGAATGAAAAG 885
||||| || |||||.|||.||.|.||.|...|.||.|..|||
BL03376___fli 823 TTTGTCACACAG-----TACAACGAACTGATCGATATGGTCAACGGCAAG 867
BSNT_05377___ 886 CTGAAAGAAGAAAAATACCGAGACTATACTCCGTTGACAAGTGAACAAAA 935
||.|..|||.|.||||||||.||||||||.|||.|||||...|||||.||
BL03376___fli 868 CTCACGGAAAAGAAATACCGCGACTATACGCCGCTGACAGAAGAACAGAA 917
BSNT_05377___ 936 AGAAGCCATGTCCGATAAAG-AGGTAGAGCTCTGGGAGGAGAAGGCGAAA 984
|.|||..|||.|.|| |||| |..|.|||||.|||||.||.||.||||||
BL03376___fli 918 AAAAGATATGACGGA-AAAGCAAATTGAGCTGTGGGAAGAAAAAGCGAAA 966
BSNT_05377___ 985 AGCGGATTGCTTA------GAAATGATTCTAGCATCAGCACCGGCACAAA 1028
||||||||| ||| ||.|.||||.|| |||..||.|||.||
BL03376___fli 967 AGCGGATTG-TTAAGGGGCGACACGATTTTA-----AGCGGCGCCACCAA 1010
BSNT_05377___ 1029 CCAAATGCGGACTGACTTTTATACTCAAGTTAATGCGGATGG-GAAAACC 1077
.||||||.||||.||.||||||.|..|.||...||.|.|.|| |||...|
BL03376___fli 1011 TCAAATGAGGACAGATTTTTATTCGAATGTCTCTGTGAACGGCGAATCGC 1060
BSNT_05377___ 1078 T----ATCAATTGACAGAATTCGGCATAACAACCTCAAGTGCTTAC---C 1120
| .|||.| ||| ||.||.||.||.||.|||||.|..||| |
BL03376___fli 1061 TGCAGCTCACT---CAG--TTTGGAATTACGACATCAAGCGTATACAGTC 1105
BSNT_05377___ 1121 AAATGCGGGGGCATTTAGAGATTAATGAAGACAAACTGAAAGCCAAAATA 1170
| |||.||.|||||||||||.||.|||||.||.||||||||.|||||.
BL03376___fli 1106 A---GCGCGGTCATTTAGAGATCAACGAAGAAAAGCTGAAAGCGAAAATT 1152
BSNT_05377___ 1171 CAAGAAGATCCGCAAAGCGTTG----CCGCTTTATTTACAAGTGGGTCGA 1216
.|||||||.||..|.||.||.| ||.||||| |||...||
BL03376___fli 1153 AAAGAAGACCCTGACAGTGTGGCAAACCTCTTTA--------TGGCGGGA 1194
BSNT_05377___ 1217 AC-AGCAGCGC------CTATAGTGATAAAGGGATTATGAAACGCAT--- 1256
|| ||||||.| .||.|.|||.|||||.||.||||.||||.|
BL03376___fli 1195 ACGAGCAGCACGGAAAATTACAATGAAAAAGGCATCATGAGACGCCTTCA 1244
BSNT_05377___ 1257 --CGG---TGACACCCTGAAAAGTACGGTGAAG-AGCATTGAAGCAAAAG 1300
||| ||| |.|| ||||..|||| || |||||||..||||
BL03376___fli 1245 GACGGTTTTGA----CCGA----TACGAAGAAGCAG-ATTGAAGATAAAG 1285
BSNT_05377___ 1301 CCGGCAACTCGACAATGGGAACCAATGATTATTCAATCGGTAAAAATTTA 1350
||||.||.||..||||||.||.||||.|.|.|.|||||||.|||||.||.
BL03376___fli 1286 CCGGAAATTCAGCAATGGCAAACAATCAATTTACAATCGGGAAAAACTTG 1335
BSNT_05377___ 1351 AATAC-----GATCAGCACTGATATTACCAAAATGCAGGACCGGTTAACC 1395
||||| .|| ||||||||.|....|||.|..||||..|.| |
BL03376___fli 1336 AATACAGTTGAAT-----CTGATATTTCGTCCATGAATAACCGCCTGA-C 1379
BSNT_05377___ 1396 AC-AATAGAAAACCGCTATTATTCAAAATTCAGTGCAATGGATTCTGCGA 1444
|| |||.|||||.|||||||||.||||.||||..||.|||||....||||
BL03376___fli 1380 ACAAATCGAAAATCGCTATTATACAAAGTTCACGGCGATGGAAAAAGCGA 1429
BSNT_05377___ 1445 TTCAAAAAATGAACGAACAAGCGTCCTATTTATCACAGCTTCTTGTACAA 1494
|||||||||||||.||||||.||.|.||.||..|.||..|.||||.||||
BL03376___fli 1430 TTCAAAAAATGAATGAACAATCGACATACTTGGCGCAATTGCTTGGACAA 1479
BSNT_05377___ 1495 TAA 1497
|||
BL03376___fli 1480 TAA 1482
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