Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05380 and BL03374

See Amino acid alignment / Visit BSNT_05380 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:31
# Commandline: needle
#    -asequence dna-align/BSNT_05380___hag.1.5803.seq
#    -bsequence dna-align/BL03374___hag.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05380___hag-BL03374___hag.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05380___hag-BL03374___hag.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05380___hag
# 2: BL03374___hag
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 972
# Identity:     745/972 (76.6%)
# Similarity:   745/972 (76.6%)
# Gaps:          93/972 ( 9.6%)
# Score: 2924.0
# 
#
#=======================================

BSNT_05380___      1 ATGAGAATTAACCACAATATCGCAGCGCTTAACACACTGAACCGTTTGTC     50
                     ||||||||.||||||||.||.||||||||||||||.|||||||||.||||
BL03374___hag      1 ATGAGAATCAACCACAACATTGCAGCGCTTAACACGCTGAACCGTCTGTC     50

BSNT_05380___     51 TTCAAACAACGGTGCGAGCCAAAAGAACATGGAGAAACTGTCTTCAGGTC    100
                     ..||||||||||.||.||||||||||||||||||||.||.|||||.||||
BL03374___hag     51 AGCAAACAACGGCGCAAGCCAAAAGAACATGGAGAAGCTTTCTTCTGGTC    100

BSNT_05380___    101 TTCGTATCAACCGTGCGGGAGATGACGCAGCGGGTCTTGCGATTTCTGAA    150
                     ||||.|||||||||||.||||||||||||||.||||||||.||.||||||
BL03374___hag    101 TTCGCATCAACCGTGCCGGAGATGACGCAGCAGGTCTTGCAATCTCTGAA    150

BSNT_05380___    151 AAAATGAGAGGACAAATCAGAGGTCTTGAAATGGCTTCTAAAAACTCTCA    200
                     ||||||||||||||||||.|.||||||||||||||||||||.|||.||||
BL03374___hag    151 AAAATGAGAGGACAAATCCGCGGTCTTGAAATGGCTTCTAAGAACGCTCA    200

BSNT_05380___    201 AGACGGAATTTCTCTTATCCAAACAGCTGAGGGTGCATTGACTGAAACTC    250
                     ||||||.||.||||||||||||||||||||.||||||||||||||.||||
BL03374___hag    201 AGACGGCATCTCTCTTATCCAAACAGCTGAAGGTGCATTGACTGAGACTC    250

BSNT_05380___    251 ACTCTATTCTTCAACGTGTTCGTGAACTAGTTGTTCAAGCAGGAAACACA    300
                     ||||.||.||||||||||||||||||||||||||||||||.||||||||.
BL03374___hag    251 ACTCAATCCTTCAACGTGTTCGTGAACTAGTTGTTCAAGCTGGAAACACT    300

BSNT_05380___    301 GGTACTCAAGATGGTACTGA--CCTTCA-AGCGATCCAAGACGAGATCAC    347
                     ||.||.|||.|   .|||||  ..||.| |||.||||||||||||||||.
BL03374___hag    301 GGAACACAACA---AACTGAGGATTTAACAGCTATCCAAGACGAGATCAA    347

BSNT_05380___    348 TTCACTTGTT----GAAGAAATCGGTGGCGGAACAAACGCTAACGGTATC    393
                     ..||    ||    ||.|||||                  |.||||.|||
BL03374___hag    348 AGCA----TTAAAAGACGAAAT------------------TGACGGCATC    375

BSNT_05380___    394 TCTGACCGTACTGAGTTTAACGGTAAAAAACTTCTT-AATGGCGATTTC-    441
                     ||.||.|||||.||.||.|||||||||||| ||.|| .||||...|||| 
BL03374___hag    376 TCAGAACGTACGGAATTCAACGGTAAAAAA-TTGTTGGATGGTACTTTCA    424

BSNT_05380___    442 -------------TC--GCA-----AGCTAGC-GGT---AAATCATTAAC    467
                                  ||  |||     |||| || |||   |||||.|||..
BL03374___hag    425 AAGCACCAGCAGATCCAGCAAACCCAGCT-GCAGGTGAAAAATCTTTAGT    473

BSNT_05380___    468 ATTCCAAATCGGAGCTAA--CAGCAGTCAACAGCTTTCTGTCAACATTGA    515
                     .||||||||.||||||||  ||.||  |||||..|||||||.||||||||
BL03374___hag    474 TTTCCAAATTGGAGCTAACGCAACA--CAACAAATTTCTGTTAACATTGA    521

BSNT_05380___    516 AAGCATG-GCAGCTACAGCAATTGG---------TGCTTTAGATACAGAC    555
                     ||..||| ||| ||...|||.|.||         |.||..||||||    
BL03374___hag    522 AAAAATGAGCA-CTGATGCATTAGGAGTCAAAGATCCTGCAGATAC----    566

BSNT_05380___    556 GGTACG------ACACTTCTTACTGGACAAGCAGTATCTGACATCGACGT    599
                       ||||      ||.||..|.||....|||.||||....||.|||||.||
BL03374___hag    567 --TACGGGCAGAACTCTAGTAACCAACCAATCAGTTAAAGATATCGATGT    614

BSNT_05380___    600 AACAAAATTTAAAGATAATGCGGCTGACACTGCTAC---TGTAGGATTCA    646
                     |||.||||||...||||||||.||   .|||||.||   ||||||.||..
BL03374___hag    615 AACTAAATTTGCTGATAATGCAGC---AACTGCAACAGATGTAGGTTTTG    661

BSNT_05380___    647 ATGCTCAACTTAAAACAGTTGATGACGCAATCAACACAGTTTCTAAACAA    696
                     ||.||||||||||||..||||||...||.||||||..|||.|||..||||
BL03374___hag    662 ATACTCAACTTAAAATCGTTGATTCAGCGATCAACCAAGTATCTGCACAA    711

BSNT_05380___    697 CGTTCAAAATTAGGTGCGGTACAAAACCGTCTTGAGCACACAATCAACAA    746
                     |||.|.|||.|.||||||||||||||||||||.|||||||||||||||||
BL03374___hag    712 CGTGCTAAACTTGGTGCGGTACAAAACCGTCTAGAGCACACAATCAACAA    761

BSNT_05380___    747 CTTAAGCGCTTCTGGTGAAAACCTGACTGCTGCTGAGTCTCGTATCCGTG    796
                     |.|..|.||||||..|||||||.||||.||||||||||||||||||||.|
BL03374___hag    762 CCTTGGTGCTTCTTCTGAAAACTTGACAGCTGCTGAGTCTCGTATCCGCG    811

BSNT_05380___    797 ACGTTGACATGGCGAAAGAAATGAGCGAGTTCACAAAGAACAACATTCTT    846
                     |||||||||||||.||||||||||||||||||||||||||||||||||||
BL03374___hag    812 ACGTTGACATGGCTAAAGAAATGAGCGAGTTCACAAAGAACAACATTCTT    861

BSNT_05380___    847 TCTCAGGCTTCTCAAGCGATGCTGGCTCAAGCAAACCAACAACCGCAAAA    896
                     |||||.|||||||||||.|||||.||||||||.||||||||.||||||||
BL03374___hag    862 TCTCAAGCTTCTCAAGCTATGCTTGCTCAAGCGAACCAACAGCCGCAAAA    911

BSNT_05380___    897 CGTACTTCAATTATTACGTTAA    918
                     |||.|||||.||..|.||||||
BL03374___hag    912 CGTTCTTCAGTTGCTTCGTTAA    933


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