Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05385 and BL03369
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:31
# Commandline: needle
# -asequence dna-align/BSNT_05385___flgK.1.5803.seq
# -bsequence dna-align/BL03369___flgK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05385___flgK-BL03369___flgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05385___flgK-BL03369___flgK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05385___flgK
# 2: BL03369___flgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1594
# Identity: 1059/1594 (66.4%)
# Similarity: 1059/1594 (66.4%)
# Gaps: 140/1594 ( 8.8%)
# Score: 3170.0
#
#
#=======================================
BSNT_05385___ 1 ATGACA---TCTACCTTTATGGGGCTTGAAACTGCA-----AGGCGGGCG 42
|||||| .|.||.|||.|.|||||.||||..||| ||||
BL03369___flg 1 ATGACAAATCCAACTTTTTTAGGGCTGGAAATCGCAAAAAGAGGC----- 45
BSNT_05385___ 43 TTAAGCGCTCAGCAGGCAGCTTTAAGCACTACTGCAAATAACGTGGCAAA 92
||...|||.|||||..|||||.|.|||...||.|||||.||..|..|.||
BL03369___flg 46 TTGTCCGCGCAGCAATCAGCTCTGAGCGTGACAGCAAACAATATATCCAA 95
BSNT_05385___ 93 TGCCAATACTGATGGTTATACAAGACAGCGGGTCTCATTGGAGGCAACGG 142
.||||||||.||.||.|||.||||||||||.||..||||..|.|||.|..
BL03369___flg 96 CGCCAATACCGAAGGGTATTCAAGACAGCGTGTTACATTTAAAGCATCAA 145
BSNT_05385___ 143 ACTATT-TCCCTGCTGTATCTAAAAACGCAGAAAAAACAGCGGGACAAAT 191
.|..|| |||.| |.|||||.|.|.||.|.|....|...||.||.||.||
BL03369___flg 146 CCCCTTATCCGT-CCGTATCAAGAGACTCTGTCGGACTTGCAGGCCAGAT 194
BSNT_05385___ 192 GGGTACGGGCGTTCAAGGAAA----ATCAGTTGAGAGAATAAGAGATATC 237
||||||.|||||| |||| .||.|||||.||..|.||.||.|.|
BL03369___flg 195 GGGTACAGGCGTT----GAAATCGGTTCGGTTGAAAGGGTTAGGGACAGC 240
BSNT_05385___ 238 TTTCTTGACTACCAATAC----CGTCTTC--AAAACAACAGTGCCGGATA 281
|||||.|||||.|||||| || | ||.|||| || |||||
BL03369___flg 241 TTTCTGGACTATCAATACAGGACG----CAGAATACAA-AG-GCCGG--- 281
BSNT_05385___ 282 CTATGACACGAAGGCAAAAG----CGCTGT--CCCAAATGGAAGGCGTTT 325
||||.|| ||.||||||| ||||.| .||||||||||||..||.
BL03369___flg 282 CTATTAC---AATGCAAAAGTGGACGCTTTTAACCAAATGGAAGGGATTA 328
BSNT_05385___ 326 TAAATGAAACGGATGACAGCGGCTTGAACAGTGTGCTCAATTCGTTTTGG 375
|.||||||..|.|.||||.|||..|.||||..||.||.|||||.||.|||
BL03369___flg 329 TGAATGAACTGAACGACACCGGACTAAACAAAGTTCTGAATTCATTCTGG 378
BSNT_05385___ 376 AATTCTCTGCAGGAATTATCGAATAATACAAATGAAGAAAGTGCACGTTC 425
|||||..|.||||||||..||||.||..|..|.|||...||.||...|||
BL03369___flg 379 AATTCCATTCAGGAATTGACGAACAACGCCCACGAACCGAGCGCTGCTTC 428
BSNT_05385___ 426 TGTTGTTGCTCGAAAAGGACAAGCTGTAGCTGAAACGTTTAATTATATTT 475
|||||||||.|.||||||.||.||.||.||.||.||.|||||...|.|.|
BL03369___flg 429 TGTTGTTGCGCAAAAAGGGCAGGCGGTCGCCGATACATTTAACACTCTGT 478
BSNT_05385___ 476 CTGAATCACTTACAAATGTCCAATCGAATTTA--AAAGCAGAGCTAAATA 523
.||||||.||.||||..||.|||||.|||||| ..|.|||| |..||.
BL03369___flg 479 ATGAATCGCTGACAACCGTTCAATCAAATTTAGGCGACCAGA--TTGATC 526
BSNT_05385___ 524 CAACTGTGTTGGATGTCAATT--CTCTGCTT---TCTCAGTTAAACAGTT 568
.||.||| ||||.|.||| ||| |||| ||.|||.|.|||||.|
BL03369___flg 527 AAAATGT----GATGACGATTAACTC-GCTTTTGTCCCAGCTGAACAGCT 571
BSNT_05385___ 569 TAAATAAGCAAATTGCACAAGTAGAGCCGGTCGGGCT-TCTTCCGAATGG 617
|.||..|||||||.||..||||.||||||..| |||| |||.|||||.|.
BL03369___flg 572 TGAACGAGCAAATCGCCAAAGTCGAGCCGAAC-GGCTATCTCCCGAACGA 620
BSNT_05385___ 618 CTTATATGACCAGCGAGATTTGCTGATCGATAAATTATCCTCAATGGTTG 667
.||.||.||..||||.|||..|||..|.|||.||.|.||.|||||||||.
BL03369___flg 621 TTTGTACGATAAGCGTGATCAGCTCCTTGATGAACTGTCTTCAATGGTTA 670
BSNT_05385___ 668 ATATCAAAGTCAGCTACAACAAATCAGGCGGGAATGCACTTGCATCTGCT 717
||||||||||||||||....|||.|.|||||.|||.||||.|||.|.|||
BL03369___flg 671 ATATCAAAGTCAGCTATGCGAAAACCGGCGGCAATCCACTCGCAACCGCT 720
BSNT_05385___ 718 GAAGGAACTGTATCAATTGAAATCCTTGATAAAAATAAA----CAGTCGC 763
|||||.|.|||.|||||.|||.|||||| |..|||| |||||.|
BL03369___flg 721 GAAGGCATTGTGTCAATAGAAGTCCTTG----ACGTAAACGGCCAGTCTC 766
BSNT_05385___ 764 TAGGAACTGTTTTGGACGG--TAAAAATTACGAGGTTTCAGAACTTG--- 808
|.||.|..|||.|.||||| .|||..|.|||| |.|||..||
BL03369___flg 767 TGGGCAAGGTTCTTGACGGGCCAAACTTCACGA-----CTGAAACTGTCA 811
BSNT_05385___ 809 CAGCCAACTATGATAATGAAACTGGGTTAGTATCAAGTATTTCAATCG-- 856
.||..||.||.||.||.||.||.||..|.||..|..|..||||..|||
BL03369___flg 812 AAGTGAATTACGACAACGATACAGGCCTTGTGACGGGCGTTTCCCTCGGC 861
BSNT_05385___ 857 GGGA--TACAGCTGTGCAGGC--GGAGTCCTTTAGCAGCAAGGGATCCCT 902
|||| .|||.| ||| .||.||.||||..|||||.||.|||||
BL03369___flg 862 GGGACGGACATC------GGCATCGATTCGTTTACTAGCAAAGGGTCCCT 905
BSNT_05385___ 903 TTTAGGATTTATAGAGTCTTACGGGTATATAACAG-CAGACGGCCAAGAA 951
..|.||.||.||.||.||||||||.||||| | ||.||||..|||||
BL03369___flg 906 GCTCGGTTTAATCGAATCTTACGGATATAT----GTCAAACGGTGAAGAA 951
BSNT_05385___ 952 AAGGGCGTATACCCGGAAATGCTTTCTGATCTTGACAATATGGCGCTTGA 1001
||.||..|.||.||.||||||||..|.|||||.||.|..||||||||||.
BL03369___flg 952 AAAGGTTTGTATCCCGAAATGCTCGCAGATCTGGATACGATGGCGCTTGC 1001
BSNT_05385___ 1002 ATTCGCGAAAGCTTTCAATGAAGTGCA-CAGAAATGGTGTGAC--CA--- 1045
.||.|||||||..||.||||.|||.|| || ||..||..|.|| ||
BL03369___flg 1002 TTTTGCGAAAGAGTTTAATGCAGTCCATCA-AAGCGGGTTTACTTCATCG 1050
BSNT_05385___ 1046 --AGAGCGGTGAACAAGGCGGAGACTTT-TTTGATTTTACTGGCGGTGAA 1092
|||.|.|.| |||| |.||| |||||.|||||.||.||.||.
BL03369___flg 1051 GGAGAACCGGG----AGGC----ATTTTCTTTGAATTTACCGGAGGAGAG 1092
BSNT_05385___ 1093 ACTGAACCTGCCAAGGGCGCGGCGGGCAAGATCAAAGTGGC---TGACAG 1139
.||||.|||||.|||||.||.||.|||||.||||||||.|| |||.|.
BL03369___flg 1093 GCTGAGCCTGCAAAGGGAGCCGCCGGCAAAATCAAAGTAGCCGATGAGAT 1142
BSNT_05385___ 1140 CATATTAG-ATTCAAAAGGCGCAAACATTGCTTTCTCACTGACTGGTGCA 1188
||| | ||||||||||||..||..|.||....||.||||.|||||.|
BL03369___flg 1143 CAT----GAATTCAAAAGGCGATAAAGTCGCCGCATCGCTGAATGGTGAA 1188
BSNT_05385___ 1189 GCCAACGATAACGCAAATGCTACAAAATTAGCAAATGTTTTAACCGGTAA 1238
||.|.|||.|||||.||.||.|||||..|.||.|||||.||.|||...||
BL03369___flg 1189 GCGAGCGACAACGCCAACGCGACAAATCTCGCTAATGTCTTCACCAAGAA 1238
BSNT_05385___ 1239 AAT--AACCATTAACGGT---AAAGAAACTAGTGTTTTAGATTATTATGC 1283
||| || |.|||| |||...||.|..||||||||.|||||.||
BL03369___flg 1239 AATTCAA-----ATCGGTGACAAAACGACGACCGTTTTAGACTATTACGC 1283
BSNT_05385___ 1284 GGGTCTGATTGGCGAGCTAGGGATCGAAGCTCAAGAGGCTAATCGACTGG 1333
.||..|.||.||.||..|.||..|..|||||||.||..|.||..||||||
BL03369___flg 1284 AGGCATCATCGGTGAAATGGGCGTAAAAGCTCAGGAAACAAACAGACTGG 1333
BSNT_05385___ 1334 CGTCTAATACAGAAACACAGCTT---AATGATGCTGACATAAACCGTCAG 1380
|....||||||||||| |||| ||...||||||..|.|||.|.|||
BL03369___flg 1334 CCAAAAATACAGAAAC---GCTTGTAAACACTGCTGAATTGAACAGACAG 1380
BSNT_05385___ 1381 CAAATGAGCGCAGTTTCTTTAGACGAAGAAATGACGAATATGATTCAATT 1430
....|.|||||.||.||.|||||||||||||||.||||.|||||.|||||
BL03369___flg 1381 TCTGTTAGCGCCGTATCATTAGACGAAGAAATGTCGAACATGATCCAATT 1430
BSNT_05385___ 1431 CCAACACGCATACAATGCAGCTGCAAGAATGGTGACTTTACAAGACGAAT 1480
|||.||.||.||.||.||.|||||.||||||.|.||..|.||.||||||.
BL03369___flg 1431 CCAGCATGCTTATAACGCGGCTGCGAGAATGATTACGCTGCAGGACGAAG 1480
BSNT_05385___ 1481 TACTTGATAAAGTGATCAACGGTATGGGTGTTGGAGGAAGGTAG 1524
|.||.|||||..|.||.|||||.||||||||.|..|||||||||
BL03369___flg 1481 TCCTCGATAAGATTATTAACGGCATGGGTGTCGTGGGAAGGTAG 1524
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