Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05392 and BL03363

See Amino acid alignment / Visit BSNT_05392 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:32
# Commandline: needle
#    -asequence dna-align/BSNT_05392___comFA.1.5803.seq
#    -bsequence dna-align/BL03363___comFA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05392___comFA-BL03363___comFA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05392___comFA-BL03363___comFA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05392___comFA
# 2: BL03363___comFA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1524
# Identity:     940/1524 (61.7%)
# Similarity:   940/1524 (61.7%)
# Gaps:         261/1524 (17.1%)
# Score: 2612.5
# 
#
#=======================================

BSNT_05392___      1 GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTA---GAGAATTGCA     47
                     ||||.|    ||..|..||.||.|.|  |.||.|.||   |.|||||||.
BL03363___com      1 GTGATT----CACATCGAACAACCGG--CATTCTATACCCGTGAATTGCG     44

BSNT_05392___     48 G-CA-GACGCTTCGAAGC--CGTCATTTGCTCAGGACTGAGCTCTCATTT     93
                     | || |    ||.|.|||  ||.||..|.||.|..|..||.|| ||.|||
BL03363___com     45 GTCATG----TTTGGAGCAGCGCCACCTTCTGAAAAGCGAACT-TCCTTT     89

BSNT_05392___     94 TCCGATGAGA-----TGATTGAATGGCATAT-CAAGAA---TGGATATAT    134
                     ||    |.||     |..||||.|||||||| ||||||   |.|||| |.
BL03363___com     90 TC----GTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATA-AA    134

BSNT_05392___    135 CACTGCTGAAAATTCTATATCCATAAATAAACG-----GGGATATAGATG    179
                     .||.|..|||     ..|||   ||||.|||||     .||.|.||..||
BL03363___com    135 AACGGAGGAA-----GGTAT---TAAAAAAACGAAGAAAGGCTTTATTTG    176

BSNT_05392___    180 TAATAGGTGCGGCCA-----AACTGATCA--------GCGGTATTATT-C    215
                     |...|||||||||||     ||| |.|||        .||||||..|| |
BL03363___com    177 TTTGAGGTGCGGCCAGCACGAAC-GCTCATTTTTCGCCCGGTATCCTTGC    225

BSNT_05392___    216 TTTTTATCACTCATCTGGAAAGAATAAGC----TGTATTGCCGTTCCTGT    261
                     |           |||.|...||.|.|.||    ||||.|||||.|||||.
BL03363___com    226 T-----------ATCGGTGCAGTAAATGCTGCGTGTACTGCCGATCCTGC    264

BSNT_05392___    262 GTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGA    311
                     ||||||||||||||.|||||.||          ||.||..|.|..|..||
BL03363___com    265 GTCATGATGGGCAGGGTGAGCGA----------TTGTACGCCTCTGTTGA    304

BSNT_05392___    312 ---GGAAAATGAACCAAACTGGCAGTCAATTAAA-------CTG-----A    346
                        ||.|.|||.|      ||.|||.||  ||||       |||     |
BL03363___com    305 CTTGGCACATGCA------TGTCAGCCA--TAAATGGGCGCCTGTTCATA    346

BSNT_05392___    347 C---ATGGGACGGCAAGCTTTCAAGC-GGACAGCAAAAAGCCGCC-AATG    391
                     |   .|||.|.|||..|||||| ||| ||.|||.|.|||||.||| |||.
BL03363___com    347 CGGAGTGGAAAGGCGCGCTTTC-AGCAGGTCAGGAGAAAGCGGCCAAATC    395

BSNT_05392___    392 TTTTAATTGAA-GCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGT    440
                     ..|||  |.|| ||.|||..||.|||||||||.||..|..||||||||||
BL03363___com    396 CATTA--TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGT    443

BSNT_05392___    441 TTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATAGAATCAGCGT    490
                     ||||||..|.||.|||||||||.|.||.||||..||.||.||||..|||.
BL03363___com    444 TTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGGATCGAATTCGCGC    493

BSNT_05392___    491 TAAATCAA-GGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGT    539
                     |.|| ||| ||..||...||||||||.||.||.||..|.||||||||.||
BL03363___com    494 TGAA-CAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGT    542

BSNT_05392___    540 ATTAGAGCTTGCTCCAAGGCT----CAAGGCTGCCTTTCAGGGGGCTGAC    585
                     |.|.|||||||||||..||.|    |||    |||||||..||||..||.
BL03363___com    543 ACTCGAGCTTGCTCCGCGGTTTCGCCAA----GCCTTTCCAGGGGTGGAA    588

BSNT_05392___    586 ATTTCAGCGCTT--TACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCG    633
                     |||.|  |||||  ||||||||||||...|||...|||...||.||.|||
BL03363___com    589 ATTGC--CGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCG    636

BSNT_05392___    634 CTTATGATTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGA    683
                     |||||.|||||.|||||.||.|||||..|.||.||||||||.|||.|.||
BL03363___com    637 CTTATCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGA    686

BSNT_05392___    684 TGTTATGATCATTGATGAAGTTGACGCTTTTCCATATTCCGCTGATCAAA    733
                     .||.||.|||||.|||||.||.||.||||||||.|||||...||||.|.|
BL03363___com    687 CGTGATCATCATAGATGAGGTGGATGCTTTTCCGTATTCTATTGATAACA    736

BSNT_05392___    734 CCCTTCAATTCGCTGTTCAAAAA---GCAAGAAAGAAAAACAGCACCCTC    780
                     |.||.||||.|||||||.|||||   ||||.|..|.||   |||.|.|.|
BL03363___com    737 CGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAA---AGCGCTCAC    783

BSNT_05392___    781 GTTTATTTAAGTGCAACACCTCCTAAAGA-ATTAAAAAGAAAAGCACT--    827
                     .|.|||||||.|||.||.|||.|...||| ||.|||   |||||..||  
BL03363___com    784 ATCTATTTAACTGCCACGCCTTCAGCAGATATGAAA---AAAAGGGCTGA    830

BSNT_05392___    828 GAACGGACAGTT--ACATTCAGTTCGCATCCCCGCAAGACACCACCGGAA    875
                     ||.||||.||.|  |||  |.||.||.||.|||||.|||..||||||.|.
BL03363___com    831 GAGCGGAAAGCTGGACA--CCGTCCGTATTCCCGCGAGATTCCACCGCAG    878

BSNT_05392___    876 ACCTTTACCCGAACCGCGCTTTG-TATGGTGTGGAAACTGGAAGAAGAAA    924
                     .||.||.||.||||| ..|.||| |.|||||.|||||.|||||.||||..
BL03363___com    879 CCCCTTGCCTGAACC-TACATTGATTTGGTGCGGAAATTGGAAAAAGAGT    927

BSNT_05392___    925 TTAAACCGAAATAAAATTC-----CGCCAGCGGTGAAAAGATGGATAGAG    969
                     ||.||.||||..|||.|||     ||||     |.||||.||||.|    
BL03363___com    928 TTGAAACGAAGAAAAGTTCCTTTTCGCC-----TCAAAAAATGGCT----    968

BSNT_05392___    970 TTTCATGTAA-----AAGAAGGGAGG---CCTGTTTTTTTATTCGTTCCT   1011
                     |||    |||     |||||..|..|   ||.|||||||||||||||||.
BL03363___com    969 TTT----TAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCC   1014

BSNT_05392___   1012 TCCGTTTCTATTCTGGAAA---------AGGCTGCTG-------------   1039
                     ||.||..||.|||| .|||         ||..|||||             
BL03363___com   1015 TCTGTCCCTGTTCT-TAAATCTGTGGTCAGTGTGCTGAAAAAGGAAACAT   1063

BSNT_05392___   1040 --CGTGCTTTAG-AGGTGTTCATTGCCGA--ACCGCATCTGTGCACGCGG   1084
                       ||.|||   | |||.|||.| ||||||  |||    |||         
BL03363___com   1064 TTCGCGCT---GAAGGAGTTTA-TGCCGATGACC----CTG---------   1096

BSNT_05392___   1085 AAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCAGAGATGGTCAGCTC   1134
                              |.|||||.||.||||||.|.|..||.||.||..||.||||.
BL03363___com   1097 ---------ACAGAAATGAAAAAGTGAACCGGTTTAGGGAAAGTAAGCTT   1137

BSNT_05392___   1135 GATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAA   1184
                     ||..|..|..|.||||||||.||..||||||||||.||.||.|||...||
BL03363___com   1138 GAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAA   1187

BSNT_05392___   1185 GGTGCAAACGGGT----GTACTAGGAGCGGAATCACCTATCTTTACGGAA   1230
                     .|.|||    |||    |||.|.||.||.||.||..|..|.|||||.|||
BL03363___com   1188 AGCGCA----GGTTGGAGTATTGGGGGCAGAGTCGGCGGTTTTTACCGAA   1233

BSNT_05392___   1231 AGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC   1280
                     |||||.||.||.|||||.||.||||||.|||||.|||||...||..|..|
BL03363___com   1234 AGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCACAC   1283

BSNT_05392___   1281 GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCG   1330
                     .||.||.||.|||..|||||||||.|.|||||..||||||       |||
BL03363___com   1284 AGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAG-------TCG   1326

BSNT_05392___   1331 AT-------GCAAGAAAGCATATAAAAGAAATGAATGAATTGGC-----A   1368
                     ||       |||.||...|||||..||.|.||||||.||.||.|     |
BL03363___com   1327 ATGAATGCGGCACGACGTCATATTCAAAACATGAATAAAATGTCTAAAAA   1376

BSNT_05392___   1369 GCAAAAGTTGAATGTACAGACTAG   1392
                     |.|||.|||||.|     ||||||
BL03363___com   1377 GGAAATGTTGATT-----GACTAG   1395


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