Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05392 and BL03363
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:32
# Commandline: needle
# -asequence dna-align/BSNT_05392___comFA.1.5803.seq
# -bsequence dna-align/BL03363___comFA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05392___comFA-BL03363___comFA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05392___comFA-BL03363___comFA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05392___comFA
# 2: BL03363___comFA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1524
# Identity: 940/1524 (61.7%)
# Similarity: 940/1524 (61.7%)
# Gaps: 261/1524 (17.1%)
# Score: 2612.5
#
#
#=======================================
BSNT_05392___ 1 GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTA---GAGAATTGCA 47
||||.| ||..|..||.||.|.| |.||.|.|| |.|||||||.
BL03363___com 1 GTGATT----CACATCGAACAACCGG--CATTCTATACCCGTGAATTGCG 44
BSNT_05392___ 48 G-CA-GACGCTTCGAAGC--CGTCATTTGCTCAGGACTGAGCTCTCATTT 93
| || | ||.|.||| ||.||..|.||.|..|..||.|| ||.|||
BL03363___com 45 GTCATG----TTTGGAGCAGCGCCACCTTCTGAAAAGCGAACT-TCCTTT 89
BSNT_05392___ 94 TCCGATGAGA-----TGATTGAATGGCATAT-CAAGAA---TGGATATAT 134
|| |.|| |..||||.|||||||| |||||| |.|||| |.
BL03363___com 90 TC----GTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATA-AA 134
BSNT_05392___ 135 CACTGCTGAAAATTCTATATCCATAAATAAACG-----GGGATATAGATG 179
.||.|..||| ..||| ||||.||||| .||.|.||..||
BL03363___com 135 AACGGAGGAA-----GGTAT---TAAAAAAACGAAGAAAGGCTTTATTTG 176
BSNT_05392___ 180 TAATAGGTGCGGCCA-----AACTGATCA--------GCGGTATTATT-C 215
|...||||||||||| ||| |.||| .||||||..|| |
BL03363___com 177 TTTGAGGTGCGGCCAGCACGAAC-GCTCATTTTTCGCCCGGTATCCTTGC 225
BSNT_05392___ 216 TTTTTATCACTCATCTGGAAAGAATAAGC----TGTATTGCCGTTCCTGT 261
| |||.|...||.|.|.|| ||||.|||||.|||||.
BL03363___com 226 T-----------ATCGGTGCAGTAAATGCTGCGTGTACTGCCGATCCTGC 264
BSNT_05392___ 262 GTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGA 311
||||||||||||||.|||||.|| ||.||..|.|..|..||
BL03363___com 265 GTCATGATGGGCAGGGTGAGCGA----------TTGTACGCCTCTGTTGA 304
BSNT_05392___ 312 ---GGAAAATGAACCAAACTGGCAGTCAATTAAA-------CTG-----A 346
||.|.|||.| ||.|||.|| |||| ||| |
BL03363___com 305 CTTGGCACATGCA------TGTCAGCCA--TAAATGGGCGCCTGTTCATA 346
BSNT_05392___ 347 C---ATGGGACGGCAAGCTTTCAAGC-GGACAGCAAAAAGCCGCC-AATG 391
| .|||.|.|||..|||||| ||| ||.|||.|.|||||.||| |||.
BL03363___com 347 CGGAGTGGAAAGGCGCGCTTTC-AGCAGGTCAGGAGAAAGCGGCCAAATC 395
BSNT_05392___ 392 TTTTAATTGAA-GCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGT 440
..||| |.|| ||.|||..||.|||||||||.||..|..||||||||||
BL03363___com 396 CATTA--TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGT 443
BSNT_05392___ 441 TTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATAGAATCAGCGT 490
||||||..|.||.|||||||||.|.||.||||..||.||.||||..|||.
BL03363___com 444 TTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGGATCGAATTCGCGC 493
BSNT_05392___ 491 TAAATCAA-GGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGT 539
|.|| ||| ||..||...||||||||.||.||.||..|.||||||||.||
BL03363___com 494 TGAA-CAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGT 542
BSNT_05392___ 540 ATTAGAGCTTGCTCCAAGGCT----CAAGGCTGCCTTTCAGGGGGCTGAC 585
|.|.|||||||||||..||.| ||| |||||||..||||..||.
BL03363___com 543 ACTCGAGCTTGCTCCGCGGTTTCGCCAA----GCCTTTCCAGGGGTGGAA 588
BSNT_05392___ 586 ATTTCAGCGCTT--TACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCG 633
|||.| ||||| ||||||||||||...|||...|||...||.||.|||
BL03363___com 589 ATTGC--CGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCG 636
BSNT_05392___ 634 CTTATGATTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGA 683
|||||.|||||.|||||.||.|||||..|.||.||||||||.|||.|.||
BL03363___com 637 CTTATCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGA 686
BSNT_05392___ 684 TGTTATGATCATTGATGAAGTTGACGCTTTTCCATATTCCGCTGATCAAA 733
.||.||.|||||.|||||.||.||.||||||||.|||||...||||.|.|
BL03363___com 687 CGTGATCATCATAGATGAGGTGGATGCTTTTCCGTATTCTATTGATAACA 736
BSNT_05392___ 734 CCCTTCAATTCGCTGTTCAAAAA---GCAAGAAAGAAAAACAGCACCCTC 780
|.||.||||.|||||||.||||| ||||.|..|.|| |||.|.|.|
BL03363___com 737 CGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAA---AGCGCTCAC 783
BSNT_05392___ 781 GTTTATTTAAGTGCAACACCTCCTAAAGA-ATTAAAAAGAAAAGCACT-- 827
.|.|||||||.|||.||.|||.|...||| ||.||| |||||..||
BL03363___com 784 ATCTATTTAACTGCCACGCCTTCAGCAGATATGAAA---AAAAGGGCTGA 830
BSNT_05392___ 828 GAACGGACAGTT--ACATTCAGTTCGCATCCCCGCAAGACACCACCGGAA 875
||.||||.||.| ||| |.||.||.||.|||||.|||..||||||.|.
BL03363___com 831 GAGCGGAAAGCTGGACA--CCGTCCGTATTCCCGCGAGATTCCACCGCAG 878
BSNT_05392___ 876 ACCTTTACCCGAACCGCGCTTTG-TATGGTGTGGAAACTGGAAGAAGAAA 924
.||.||.||.||||| ..|.||| |.|||||.|||||.|||||.||||..
BL03363___com 879 CCCCTTGCCTGAACC-TACATTGATTTGGTGCGGAAATTGGAAAAAGAGT 927
BSNT_05392___ 925 TTAAACCGAAATAAAATTC-----CGCCAGCGGTGAAAAGATGGATAGAG 969
||.||.||||..|||.||| |||| |.||||.||||.|
BL03363___com 928 TTGAAACGAAGAAAAGTTCCTTTTCGCC-----TCAAAAAATGGCT---- 968
BSNT_05392___ 970 TTTCATGTAA-----AAGAAGGGAGG---CCTGTTTTTTTATTCGTTCCT 1011
||| ||| |||||..|..| ||.|||||||||||||||||.
BL03363___com 969 TTT----TAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCC 1014
BSNT_05392___ 1012 TCCGTTTCTATTCTGGAAA---------AGGCTGCTG------------- 1039
||.||..||.|||| .||| ||..|||||
BL03363___com 1015 TCTGTCCCTGTTCT-TAAATCTGTGGTCAGTGTGCTGAAAAAGGAAACAT 1063
BSNT_05392___ 1040 --CGTGCTTTAG-AGGTGTTCATTGCCGA--ACCGCATCTGTGCACGCGG 1084
||.||| | |||.|||.| |||||| ||| |||
BL03363___com 1064 TTCGCGCT---GAAGGAGTTTA-TGCCGATGACC----CTG--------- 1096
BSNT_05392___ 1085 AAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCAGAGATGGTCAGCTC 1134
|.|||||.||.||||||.|.|..||.||.||..||.||||.
BL03363___com 1097 ---------ACAGAAATGAAAAAGTGAACCGGTTTAGGGAAAGTAAGCTT 1137
BSNT_05392___ 1135 GATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAA 1184
||..|..|..|.||||||||.||..||||||||||.||.||.|||...||
BL03363___com 1138 GAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAA 1187
BSNT_05392___ 1185 GGTGCAAACGGGT----GTACTAGGAGCGGAATCACCTATCTTTACGGAA 1230
.|.||| ||| |||.|.||.||.||.||..|..|.|||||.|||
BL03363___com 1188 AGCGCA----GGTTGGAGTATTGGGGGCAGAGTCGGCGGTTTTTACCGAA 1233
BSNT_05392___ 1231 AGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC 1280
|||||.||.||.|||||.||.||||||.|||||.|||||...||..|..|
BL03363___com 1234 AGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCACAC 1283
BSNT_05392___ 1281 GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCG 1330
.||.||.||.|||..|||||||||.|.|||||..|||||| |||
BL03363___com 1284 AGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAG-------TCG 1326
BSNT_05392___ 1331 AT-------GCAAGAAAGCATATAAAAGAAATGAATGAATTGGC-----A 1368
|| |||.||...|||||..||.|.||||||.||.||.| |
BL03363___com 1327 ATGAATGCGGCACGACGTCATATTCAAAACATGAATAAAATGTCTAAAAA 1376
BSNT_05392___ 1369 GCAAAAGTTGAATGTACAGACTAG 1392
|.|||.|||||.| ||||||
BL03363___com 1377 GGAAATGTTGATT-----GACTAG 1395
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